Rh7DG267500
NAC Family

inactive shikimate kinase like 2

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0004803
Physical Location & Seq
Forward (+)
28569129 .. 28572964
3836 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG267500.1

Sequence Viewer

Length: 1149 bp
ATGGCCGCTACCACCACCACCACTTCCACTGCTTTAATCAACACCTTGCAACCCTCTTCCCTTCAAAAGCTCTCAAGACCCAAATGGACAGTCACCAACCTTTCTCTCCCAACACCTCCGTCTCGCGTTTTGTTCGCAAATGGGTGCCGTTTAAAGACCTCCCTCCCTCGTGTCTCCGGCTCTCAAAGTTTCCCCACCGTCCCCGTCACCGTCAAGGACTACGAGTTTCTTGATGGTTCTACTGAGGTGGAATTGAGATTACAGCTGGGGGAACGAAACATCACAAACTCCAGAGACATTTTTGTGGATGCAAATGGCTCCTCTTTAATAATAAAAGTACAGCACTCTGGGTCTTTTGTCACACTTATGGAAACTAATCAACTGTTTGAAAAAATAAAGCCTGCTGAAACAATATGGTATATAGATGAAGATCAGCTAGTAATAAACTTGAAGAAGCAGGATCCAGATTTGAAATGGCCTGACATTGTTGAGTCCTGGGAGTCTCTGACCGTTGGATCTATGCAACTTCTGAAAGGAACGTCAATTTACATTGTTGGCGATTCAACTGAAATCAACCAGAAAGTGGCTCAAGAACTTGCGGTTGGTCTTGGATATACACCACTCACTACGAAGGAGTTGCTGGAAGCATTTGCCAAGCAGAGTGTTGATTCATGGCTGCTTGCTGAAGGTTCTGAACCTGTAGTAGAAGCAGAAAGTGCTATATTAGAAAGTTTAAGTAGTCATGCTAGGGCAGTAATTGGTACATTAGGAGGCCAGCATGGAGCTGCTGGAAGAGCTCATAAATGGCGCCATCTTTATGCAGGATTTACTATCTGGCTGTCACAAACTGATGCTACAGATGAAGATTCTGCAAAGGAAGAGGCCAGGAGTCATATCCAAGATGGTAGAGTAGCTTACTCAAATGCAGACGTTGTTGTCAAGCTACAGGGTTGGGATGTAGATCATGTTAAAACTGTGGCTCAGGCATGCTTGAGTGCACTTAAACAATTAGTTCTGTCAGACAAGAAGCTTCCAGGCAAGAAGAGCCTCTACATACGCTTGGGATGCCGAGGTGACTGGCCAAACATCAAACCTCCTGGGTGGGATCCCTCAACTGGAGATGATGCATCTCCAGGTGGATTTCAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000287 GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009536 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0046872
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
CS SKI

Protein Analysis

382

Amino Acids

41.76

Weight (kDa)

5.6

Isoelectric Point (pI)

37.52

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 935
AccB1I GGYRCC 2 cut(s) 144, 807
AccB7I CCANNNNNTGG 1 cut(s) 583
AccII CGCG 1 cut(s) 126
AciI CCGC 2 cut(s) 6, 599
AclWI GGATC 5 cut(s) 455, 468, 523, 1100, 1113
AcoI YGGCCR 2 cut(s) 3, 1079
AcuI CTGAAG 1 cut(s) 705
AcyI GRCGYC 1 cut(s) 808
AfaI GTAC 2 cut(s) 339, 763
AfiI CCNNNNNNNGG 2 cut(s) 583, 1115
AgsI TTSAA 6 cut(s) 65, 389, 451, 472, 564, 1145
AjnI CCWGG 5 cut(s) 494, 884, 1033, 1096, 1132
AjuI GAANNNNNNNTTGG 2 cut(s) 585, 617
AluBI AGCT 8 cut(s) 70, 265, 436, 785, 797, 914, 943, 1030
AluI AGCT 8 cut(s) 70, 265, 436, 785, 797, 914, 943, 1030
Alw21I GWGCWC 2 cut(s) 799, 1000
Alw26I GTCTC 4 cut(s) 126, 178, 288, 507
Alw44I GTGCAC 1 cut(s) 996
AlwI GGATC 5 cut(s) 455, 468, 523, 1100, 1113
AoxI GGCC 5 cut(s) 3, 476, 772, 882, 1079
ApaLI GTGCAC 1 cut(s) 996
ApeKI GCWGC 2 cut(s) 676, 785
ArsI GACNNNNNNTTYG 2 cut(s) 75, 107
AspLEI GCGC 1 cut(s) 810
AsuHPI GGTGA 3 cut(s) 85, 199, 1085
BaeGI GKGCMC 1 cut(s) 1000
BalI TGGCCA 1 cut(s) 1081
BamHI GGATCC 2 cut(s) 460, 1105
BanI GGYRCC 2 cut(s) 144, 807
BanII GRGCYC 1 cut(s) 799
BarI GAAGNNNNNNTAC 2 cut(s) 1034, 1066
BauI CACGAG 1 cut(s) 168
Bbv12I GWGCWC 2 cut(s) 799, 1000
BbvI GCAGC 2 cut(s) 663, 772
BccI CCATC 3 cut(s) 227, 819, 896
BceAI ACGGC 1 cut(s) 132
BcgI CGANNNNNNTGC 2 cut(s) 619, 653
BciT130I CCWGG 5 cut(s) 496, 886, 1035, 1098, 1134
BcoDI GTCTC 4 cut(s) 126, 178, 288, 507
BfaI CTAG 2 cut(s) 437, 747
BfmI CTRYAG 3 cut(s) 699, 855, 944
BfoI RGCGCY 1 cut(s) 811
BisI GCNGC 3 cut(s) 6, 677, 786
BlsI GCNGC 3 cut(s) 7, 678, 787
Bme1390I CCNGG 5 cut(s) 496, 886, 1035, 1098, 1134
BmiI GGNNCC 5 cut(s) 146, 319, 462, 809, 1107
BmrFI CCNGG 5 cut(s) 496, 886, 1035, 1098, 1134
BmsI GCATC 5 cut(s) 298, 841, 1055, 1114, 1136
BpmI CTGGAG 3 cut(s) 274, 1116, 1137
Bpu10I CCTNAGC 1 cut(s) 981
BpuEI CTTGAG 3 cut(s) 58, 573, 1012
BsaBI GATNNNNATC 2 cut(s) 429, 960
BsaHI GRCGYC 1 cut(s) 808
BsaJI CCNNGG 3 cut(s) 495, 1069, 1097
Bsc4I CCNNNNNNNGG 2 cut(s) 583, 1115
Bse1I ACTGG 2 cut(s) 1082, 1120
Bse8I GATNNNNATC 2 cut(s) 429, 960
BseBI CCWGG 5 cut(s) 496, 886, 1035, 1098, 1134
BseDI CCNNGG 3 cut(s) 495, 1069, 1097
BseGI GGATG 3 cut(s) 313, 961, 1070
BseJI GATNNNNATC 2 cut(s) 429, 960
BseLI CCNNNNNNNGG 2 cut(s) 583, 1115
BseMII CTCAG 2 cut(s) 234, 995
BseNI ACTGG 2 cut(s) 1082, 1120
BseRI GAGGAG 1 cut(s) 310
BseSI GKGCMC 1 cut(s) 1000
BseXI GCAGC 2 cut(s) 663, 772
BseYI CCCAGC 1 cut(s) 265
Bsh1236I CGCG 1 cut(s) 126
BshFI GGCC 5 cut(s) 5, 478, 774, 884, 1081
BshNI GGYRCC 2 cut(s) 144, 807
BsiHKAI GWGCWC 2 cut(s) 799, 1000
BsiSI CCGG 1 cut(s) 177
BslFI GGGAC 1 cut(s) 185
BslI CCNNNNNNNGG 2 cut(s) 583, 1115
BsmAI GTCTC 4 cut(s) 126, 178, 288, 507
BsmBI CGTCTC 1 cut(s) 126
BsmFI GGGAC 1 cut(s) 185
BsnI GGCC 5 cut(s) 5, 478, 774, 884, 1081
Bsp1286I GDGCHC 2 cut(s) 799, 1000
Bsp143I GATC 5 cut(s) 430, 460, 515, 961, 1105
BspACI CCGC 2 cut(s) 6, 599
BspANI GGCC 5 cut(s) 5, 478, 774, 884, 1081
BspCNI CTCAG 2 cut(s) 235, 994
BspFNI CGCG 1 cut(s) 126
BspLI GGNNCC 5 cut(s) 146, 319, 462, 809, 1107
BspPI GGATC 5 cut(s) 455, 468, 523, 1100, 1113
BspQI GCTCTTC 2 cut(s) 787, 1037
BspT107I GGYRCC 2 cut(s) 144, 807
BsrI ACTGG 2 cut(s) 1082, 1120
BssECI CCNNGG 3 cut(s) 495, 1069, 1097
BssMI GATC 5 cut(s) 430, 460, 515, 961, 1105
BssNI GRCGYC 1 cut(s) 808
BssSI CACGAG 1 cut(s) 168
Bst2BI CACGAG 1 cut(s) 168
Bst2UI CCWGG 5 cut(s) 496, 886, 1035, 1098, 1134
Bst4CI ACNGT 6 cut(s) 91, 199, 211, 384, 511, 976
Bst6I CTCTTC 4 cut(s) 61, 787, 873, 1037
BstACI GRCGYC 1 cut(s) 808
BstAPI GCANNNNNTGC 1 cut(s) 716
BstC8I GCNNGC 4 cut(s) 402, 681, 776, 988
BstDEI CTNAG 2 cut(s) 243, 981
BstF5I GGATG 3 cut(s) 313, 961, 1070
BstFNI CGCG 1 cut(s) 126
BstH2I RGCGCY 1 cut(s) 811
BstHHI GCGC 1 cut(s) 810
BstKTI GATC 5 cut(s) 433, 463, 518, 964, 1108
BstMAI GTCTC 4 cut(s) 126, 178, 288, 507
BstMBI GATC 5 cut(s) 430, 460, 515, 961, 1105
BstMWI GCNNNNNNNGC 4 cut(s) 716, 794, 1044, 1065
BstNI CCWGG 5 cut(s) 496, 886, 1035, 1098, 1134
BstNSI RCATGY 1 cut(s) 990
BstSCI CCNGG 5 cut(s) 494, 884, 1033, 1096, 1132
BstSFI CTRYAG 3 cut(s) 699, 855, 944
BstSLI GKGCMC 1 cut(s) 1000
BstUI CGCG 1 cut(s) 126
BstV1I GCAGC 2 cut(s) 663, 772
BstX2I RGATCY 3 cut(s) 460, 515, 1105
BstYI RGATCY 3 cut(s) 460, 515, 1105
BsuRI GGCC 5 cut(s) 5, 478, 774, 884, 1081
BtsCI GGATG 3 cut(s) 313, 961, 1070
BtsI GCAGTG 1 cut(s) 27
BtsIMutI CAGTG 1 cut(s) 27
Cac8I GCNNGC 4 cut(s) 402, 681, 776, 988
CfoI GCGC 1 cut(s) 810
Csp6I GTAC 2 cut(s) 338, 762
CviAII CATG 5 cut(s) 672, 743, 779, 965, 987
CviQI GTAC 2 cut(s) 338, 762
DdeI CTNAG 2 cut(s) 243, 981
DinI GGCGCC 1 cut(s) 809
DpnI GATC 5 cut(s) 432, 462, 517, 963, 1107
DpnII GATC 5 cut(s) 430, 460, 515, 961, 1105
DraI TTTAAA 1 cut(s) 153
DrdI GACNNNNNNGTC 1 cut(s) 935
DseDI GACNNNNNNGTC 1 cut(s) 935
EaeI YGGCCR 2 cut(s) 3, 1079
Eam1104I CTCTTC 4 cut(s) 61, 787, 873, 1037
EarI CTCTTC 4 cut(s) 61, 787, 873, 1037
Ecl136II GAGCTC 1 cut(s) 797
Eco24I GRGCYC 1 cut(s) 799
Eco53kI GAGCTC 1 cut(s) 797
Eco57I CTGAAG 1 cut(s) 705
EcoICRI GAGCTC 1 cut(s) 797
EcoRII CCWGG 5 cut(s) 494, 884, 1033, 1096, 1132
EcoT22I ATGCAT 1 cut(s) 1129
EcoT38I GRGCYC 1 cut(s) 799
EgeI GGCGCC 1 cut(s) 809
EheI GGCGCC 1 cut(s) 809
Esp3I CGTCTC 1 cut(s) 126
FaeI CATG 5 cut(s) 675, 746, 782, 968, 990
FaqI GGGAC 1 cut(s) 185
FatI CATG 5 cut(s) 671, 742, 778, 964, 986
Fnu4HI GCNGC 3 cut(s) 6, 677, 786
FokI GGATG 3 cut(s) 320, 968, 1077
FriOI GRGCYC 1 cut(s) 799
Fsp4HI GCNGC 3 cut(s) 6, 677, 786
FspBI CTAG 2 cut(s) 437, 747
GlaI GCGC 1 cut(s) 809
GluI GCNGC 3 cut(s) 6, 677, 786
GsaI CCCAGC 1 cut(s) 269
GsuI CTGGAG 3 cut(s) 274, 1116, 1137
HaeII RGCGCY 1 cut(s) 811
HaeIII GGCC 5 cut(s) 5, 478, 774, 884, 1081
HapII CCGG 1 cut(s) 177
HhaI GCGC 1 cut(s) 810
Hin1I GRCGYC 1 cut(s) 808
Hin1II CATG 5 cut(s) 675, 746, 782, 968, 990
Hin6I GCGC 1 cut(s) 808
HinP1I GCGC 1 cut(s) 808
HindIII AAGCTT 1 cut(s) 1028
HinfI GANTC 6 cut(s) 491, 500, 560, 668, 866, 889
HpaII CCGG 1 cut(s) 177
HphI GGTGA 3 cut(s) 85, 199, 1085
Hpy166II GTNNAC 1 cut(s) 998
Hpy188I TCNGA 4 cut(s) 507, 531, 694, 1021
Hpy188III TCNNGA 5 cut(s) 75, 230, 291, 464, 590
Hpy8I GTNNAC 1 cut(s) 998
HpyAV CCTTC 3 cut(s) 71, 625, 680
HpyCH4III ACNGT 6 cut(s) 91, 199, 211, 384, 511, 976
HpyCH4IV ACGT 2 cut(s) 539, 930
HpyCH4V TGCA 8 cut(s) 49, 311, 523, 821, 872, 926, 998, 1127
HpyF10VI GCNNNNNNNGC 4 cut(s) 716, 794, 1044, 1065
HpyF3I CTNAG 2 cut(s) 243, 981
HpySE526I ACGT 2 cut(s) 539, 930
Hsp92I GRCGYC 1 cut(s) 808
Hsp92II CATG 5 cut(s) 675, 746, 782, 968, 990
HspAI GCGC 1 cut(s) 808
KasI GGCGCC 1 cut(s) 807
Kzo9I GATC 5 cut(s) 430, 460, 515, 961, 1105
LguI GCTCTTC 2 cut(s) 787, 1037
LmnI GCTCC 2 cut(s) 323, 782
Lsp1109I GCAGC 2 cut(s) 663, 772
LweI GCATC 5 cut(s) 298, 841, 1055, 1114, 1136
MaeI CTAG 2 cut(s) 437, 747
MaeII ACGT 2 cut(s) 539, 930
MaeIII GTNAC 5 cut(s) 91, 205, 358, 840, 1073
MalI GATC 5 cut(s) 432, 462, 517, 963, 1107
MboI GATC 5 cut(s) 430, 460, 515, 961, 1105
MboII GAAGA 7 cut(s) 48, 440, 463, 804, 875, 890, 1054
MflI RGATCY 3 cut(s) 460, 515, 1105
MhlI GDGCHC 2 cut(s) 799, 1000
MlsI TGGCCA 1 cut(s) 1081
MluCI AATT 4 cut(s) 251, 543, 756, 1007
MluNI TGGCCA 1 cut(s) 1081
Mly113I GGCGCC 1 cut(s) 808
MlyI GAGTC 3 cut(s) 500, 509, 898
MmeI TCCRAC 1 cut(s) 493
Mox20I TGGCCA 1 cut(s) 1081
Mph1103I ATGCAT 1 cut(s) 1129
MscI TGGCCA 1 cut(s) 1081
MseI TTAA 6 cut(s) 35, 152, 326, 734, 969, 1002
MslI CAYNNNNRTG 3 cut(s) 302, 365, 816
Msp20I TGGCCA 1 cut(s) 1081
MspA1I CMGCKG 1 cut(s) 265
MspI CCGG 1 cut(s) 177
MspR9I CCNGG 5 cut(s) 496, 886, 1035, 1098, 1134
MvaI CCWGG 5 cut(s) 496, 886, 1035, 1098, 1134
MvnI CGCG 1 cut(s) 126
MwoI GCNNNNNNNGC 4 cut(s) 716, 794, 1044, 1065
NarI GGCGCC 1 cut(s) 808
NdeII GATC 5 cut(s) 430, 460, 515, 961, 1105
NlaIII CATG 5 cut(s) 675, 746, 782, 968, 990
NlaIV GGNNCC 5 cut(s) 146, 319, 462, 809, 1107
NmeAIII GCCGAG 1 cut(s) 1094
NmuCI GTSAC 5 cut(s) 91, 205, 358, 840, 1073
NsiI ATGCAT 1 cut(s) 1129
NspI RCATGY 1 cut(s) 990
PaeI GCATGC 1 cut(s) 990
PciSI GCTCTTC 2 cut(s) 787, 1037
PfeI GAWTC 3 cut(s) 560, 668, 866
PflMI CCANNNNNTGG 1 cut(s) 583
PkrI GCNGC 3 cut(s) 7, 678, 787
PleI GAGTC 3 cut(s) 499, 508, 897
PluTI GGCGCC 1 cut(s) 811
PpsI GAGTC 3 cut(s) 499, 508, 897
Psp124BI GAGCTC 1 cut(s) 799
Psp6I CCWGG 5 cut(s) 494, 884, 1033, 1096, 1132
PspFI CCCAGC 1 cut(s) 265
PspGI CCWGG 5 cut(s) 494, 884, 1033, 1096, 1132
PspN4I GGNNCC 5 cut(s) 146, 319, 462, 809, 1107
PsuI RGATCY 3 cut(s) 460, 515, 1105
PvuII CAGCTG 1 cut(s) 265
RsaI GTAC 2 cut(s) 339, 763
RsaNI GTAC 2 cut(s) 338, 762
RseI CAYNNNNRTG 3 cut(s) 302, 365, 816
SacI GAGCTC 1 cut(s) 799
SapI GCTCTTC 2 cut(s) 787, 1037
SaqAI TTAA 6 cut(s) 35, 152, 326, 734, 969, 1002
SatI GCNGC 3 cut(s) 6, 677, 786
Sau3AI GATC 5 cut(s) 430, 460, 515, 961, 1105
SchI GAGTC 3 cut(s) 500, 509, 898
ScrFI CCNGG 5 cut(s) 496, 886, 1035, 1098, 1134
SduI GDGCHC 2 cut(s) 799, 1000
SfaNI GCATC 5 cut(s) 298, 841, 1055, 1114, 1136
SfcI CTRYAG 3 cut(s) 699, 855, 944
SfoI GGCGCC 1 cut(s) 809
SmiMI CAYNNNNRTG 3 cut(s) 302, 365, 816
SmlI CTYRAG 3 cut(s) 73, 588, 991
SmoI CTYRAG 3 cut(s) 73, 588, 991
SphI GCATGC 1 cut(s) 990
Sse9I AATT 4 cut(s) 251, 543, 756, 1007
SsiI CCGC 2 cut(s) 6, 599
SspDI GGCGCC 1 cut(s) 807
SspMI CTAG 2 cut(s) 437, 747
SstI GAGCTC 1 cut(s) 799
StyD4I CCNGG 5 cut(s) 494, 884, 1033, 1096, 1132
TaaI ACNGT 6 cut(s) 91, 199, 211, 384, 511, 976
TaiI ACGT 2 cut(s) 542, 933
TasI AATT 4 cut(s) 251, 543, 756, 1007
TatI WGTACW 1 cut(s) 337
TauI GCSGC 1 cut(s) 8
TfiI GAWTC 3 cut(s) 560, 668, 866
Tru1I TTAA 6 cut(s) 35, 152, 326, 734, 969, 1002
Tru9I TTAA 6 cut(s) 35, 152, 326, 734, 969, 1002
TscAI CASTG 1 cut(s) 34
TseFI GTSAC 5 cut(s) 91, 205, 358, 840, 1073
TseI GCWGC 2 cut(s) 676, 785
Tsp45I GTSAC 5 cut(s) 91, 205, 358, 840, 1073
TspDTI ATGAA 3 cut(s) 441, 660, 876
TspGWI ACGGA 1 cut(s) 108
TspRI CASTG 1 cut(s) 34
Van91I CCANNNNNTGG 1 cut(s) 583
VneI GTGCAC 1 cut(s) 996
XceI RCATGY 1 cut(s) 990
XcmI CCANNNNNNNNNTGG 1 cut(s) 471
XspI CTAG 2 cut(s) 437, 747
Zsp2I ATGCAT 1 cut(s) 1129
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.