FvH4_2g07910

finger protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0007484
Physical Location & Seq
Reverse (-)
6835311 .. 6836093
783 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g07910.t1

Sequence Viewer

Length: 783 bp
ATGGAAGTAACTCACTCACTAAATCGCTTCTACTTTGATGTCACTCCCCTTGATACACAACTCAATGATGAACTTCACAAAGAACCTTCACCGGTTCAACTTTTTATCAAGTTTGACTACTACATCAAACACAAATACTTCAATATATCACAAGATCATAGAACCCGAACCCTCATTCACCGATCCGAAGAGAGAAACGAAGCAGCGCACCAATCTGATTTATGCCAGTTAGATCAGAGCCACATGAACAACGACTCTTATAAGAAGTCTCTTTTTTACATTCTGTCTGAACTTGGAATCGATGAAAACAAACACAATGCAATTGTCAATGAGATTACAGACTGGGGTCGCATAATCGACAGCTTAGAGTACAACAAAGATCGAAAATTACTGAGCTTGTGGGTTTATATAGCGAGTGAGCACATAACCTTTCGCTGCGAACGGTGTTTGATGGAAAGAGAGTCATTGATAAAAGAGAAGCTAAAGGGAGTTAGAGTGGTAAAAGATGATGAGAAAGAATGTGATGATGATAATGAGGAGGAGGACTATGAAAAAAGAAAACGCCGACGAGTGGTTCGTGAGAGTGAGATTTGCAGTATTTGTATGGAAGATTTTGCAGTATCAGATGCTGTCTTCTGCACGCCTTGTTGGCATGTGTTTCATGACAAATGCATAGTACGATGGCTGGGAGAGAAGCTCCATTGCCCACTTTGCCGCTTCAAGATGCCTATAGAAGAACATAGAGATATTTCTGGGGACAAAACTAGACCATGTTTAGCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-RING_2

Protein Analysis

261

Amino Acids

31.14

Weight (kDa)

5.74

Isoelectric Point (pI)

62.81

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-RING_2 PF13639 198 - 239 8.5e-12 Ring finger domain
zf-C3HC4_2 PF13923 198 - 238 1.2e-10 Zinc finger, C3HC4 type (RING finger)
zf-RING_11 PF17123 198 - 225 4.1e-10 RING-like zinc finger
zf-RING_UBOX PF13445 198 - 236 5.1e-06 RING-type zinc-finger
zf-C3HC4 PF00097 198 - 238 6.2e-06 Zinc finger, C3HC4 type (RING finger)
zf-RING_5 PF14634 198 - 239 6.9e-06 zinc-RING finger domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 261
AciI CCGC 1 cut(s) 715
AclWI GGATC 1 cut(s) 177
AfaI GTAC 2 cut(s) 371, 678
AfiI CCNNNNNNNGG 1 cut(s) 571
AgeI ACCGGT 1 cut(s) 91
AgsI TTSAA 3 cut(s) 98, 142, 721
AluBI AGCT 4 cut(s) 363, 396, 481, 697
AluI AGCT 4 cut(s) 363, 396, 481, 697
Alw21I GWGCWC 1 cut(s) 423
Alw26I GTCTC 1 cut(s) 273
AlwI GGATC 1 cut(s) 177
AlwNI CAGNNNCTG 1 cut(s) 629
ApeKI GCWGC 2 cut(s) 203, 435
ArsI GACNNNNNNTTYG 2 cut(s) 558, 590
AsiGI ACCGGT 1 cut(s) 91
AspLEI GCGC 1 cut(s) 208
AsuHPI GGTGA 2 cut(s) 81, 170
BbsI GAAGAC 1 cut(s) 625
Bbv12I GWGCWC 1 cut(s) 423
BbvI GCAGC 2 cut(s) 215, 422
BccI CCATC 2 cut(s) 445, 675
BcoDI GTCTC 1 cut(s) 273
BfaI CTAG 1 cut(s) 765
BfmI CTRYAG 1 cut(s) 729
BglI GCCNNNNNGGC 1 cut(s) 649
BisI GCNGC 3 cut(s) 204, 436, 715
BlsI GCNGC 3 cut(s) 205, 437, 716
BmrI ACTGGG 1 cut(s) 352
BmsI GCATC 2 cut(s) 616, 714
BmuI ACTGGG 1 cut(s) 352
BoxI GACNNNNGTC 1 cut(s) 345
BpiI GAAGAC 1 cut(s) 625
BplI GAGNNNNNCTC 2 cut(s) 681, 713
Bsa29I ATCGAT 1 cut(s) 300
BsaWI WCCGGW 1 cut(s) 91
BsaXI ACNNNNNCTCC 2 cut(s) 480, 510
Bsc4I CCNNNNNNNGG 1 cut(s) 571
Bse118I RCCGGY 1 cut(s) 91
Bse1I ACTGG 2 cut(s) 226, 347
Bse3DI GCAATG 1 cut(s) 700
BseCI ATCGAT 1 cut(s) 300
BseLI CCNNNNNNNGG 1 cut(s) 571
BseMI GCAATG 1 cut(s) 700
BseMII CTCAG 1 cut(s) 383
BseNI ACTGG 2 cut(s) 226, 347
BseRI GAGGAG 2 cut(s) 551, 554
BseXI GCAGC 2 cut(s) 215, 422
BseYI CCCAGC 1 cut(s) 685
BsgI GTGCAG 1 cut(s) 622
BshTI ACCGGT 1 cut(s) 91
BshVI ATCGAT 1 cut(s) 300
BsiHKAI GWGCWC 1 cut(s) 423
BsiSI CCGG 1 cut(s) 92
BslFI GGGAC 1 cut(s) 770
BslI CCNNNNNNNGG 1 cut(s) 571
BsmAI GTCTC 1 cut(s) 273
BsmFI GGGAC 1 cut(s) 770
Bsp1286I GDGCHC 1 cut(s) 423
Bsp143I GATC 4 cut(s) 154, 182, 232, 379
BspACI CCGC 1 cut(s) 715
BspCNI CTCAG 1 cut(s) 384
BspDI ATCGAT 1 cut(s) 300
BspHI TCATGA 1 cut(s) 661
BspPI GGATC 1 cut(s) 177
BsrDI GCAATG 1 cut(s) 700
BsrFI RCCGGY 1 cut(s) 91
BsrI ACTGG 2 cut(s) 226, 347
BssAI RCCGGY 1 cut(s) 91
BssMI GATC 4 cut(s) 154, 182, 232, 379
Bst4CI ACNGT 1 cut(s) 444
Bst6I CTCTTC 1 cut(s) 183
BstC8I GCNNGC 1 cut(s) 641
BstDEI CTNAG 2 cut(s) 364, 392
BstHHI GCGC 1 cut(s) 208
BstKTI GATC 4 cut(s) 157, 185, 235, 382
BstMAI GTCTC 1 cut(s) 273
BstMBI GATC 4 cut(s) 154, 182, 232, 379
BstMWI GCNNNNNNNGC 2 cut(s) 649, 711
BstNSI RCATGY 1 cut(s) 656
BstPAI GACNNNNGTC 1 cut(s) 345
BstSFI CTRYAG 1 cut(s) 729
BstV1I GCAGC 2 cut(s) 215, 422
BstV2I GAAGAC 1 cut(s) 625
Bsu15I ATCGAT 1 cut(s) 300
BsuTUI ATCGAT 1 cut(s) 300
Cac8I GCNNGC 1 cut(s) 641
CaiI CAGNNNCTG 1 cut(s) 629
CciI TCATGA 1 cut(s) 661
CfoI GCGC 1 cut(s) 208
Cfr10I RCCGGY 1 cut(s) 91
ClaI ATCGAT 1 cut(s) 300
Csp6I GTAC 2 cut(s) 370, 677
CspAI ACCGGT 1 cut(s) 91
CviAII CATG 5 cut(s) 244, 653, 662, 771, 780
CviJI RGCY 6 cut(s) 240, 363, 396, 481, 685, 697
CviKI_1 RGCY 6 cut(s) 240, 363, 396, 481, 685, 697
CviQI GTAC 2 cut(s) 370, 677
DdeI CTNAG 2 cut(s) 364, 392
DpnI GATC 4 cut(s) 156, 184, 234, 381
DpnII GATC 4 cut(s) 154, 182, 232, 379
Eam1104I CTCTTC 1 cut(s) 183
EarI CTCTTC 1 cut(s) 183
EcoT22I ATGCAT 1 cut(s) 674
FaeI CATG 5 cut(s) 247, 656, 665, 774, 783
FaqI GGGAC 1 cut(s) 770
FatI CATG 5 cut(s) 243, 652, 661, 770, 779
Fnu4HI GCNGC 3 cut(s) 204, 436, 715
Fsp4HI GCNGC 3 cut(s) 204, 436, 715
FspBI CTAG 1 cut(s) 765
GlaI GCGC 1 cut(s) 207
GluI GCNGC 3 cut(s) 204, 436, 715
GsaI CCCAGC 1 cut(s) 689
HapII CCGG 1 cut(s) 92
HhaI GCGC 1 cut(s) 208
Hin1II CATG 5 cut(s) 247, 656, 665, 774, 783
Hin6I GCGC 1 cut(s) 206
HinP1I GCGC 1 cut(s) 206
HinfI GANTC 3 cut(s) 254, 297, 461
HpaII CCGG 1 cut(s) 92
HphI GGTGA 2 cut(s) 81, 170
Hpy188I TCNGA 5 cut(s) 187, 217, 237, 289, 625
Hpy188III TCNNGA 3 cut(s) 578, 662, 721
Hpy99I CGWCG 1 cut(s) 570
HpyAV CCTTC 1 cut(s) 96
HpyCH4III ACNGT 1 cut(s) 444
HpyCH4V TGCA 5 cut(s) 320, 594, 617, 639, 672
HpyF10VI GCNNNNNNNGC 2 cut(s) 649, 711
HpyF3I CTNAG 2 cut(s) 364, 392
Hsp92II CATG 5 cut(s) 247, 656, 665, 774, 783
HspAI GCGC 1 cut(s) 206
Kzo9I GATC 4 cut(s) 154, 182, 232, 379
LmnI GCTCC 1 cut(s) 702
LpnPI CCDG 5 cut(s) 105, 239, 328, 671, 738
Lsp1109I GCAGC 2 cut(s) 215, 422
LweI GCATC 2 cut(s) 616, 714
MaeI CTAG 1 cut(s) 765
MaeIII GTNAC 2 cut(s) 7, 40
MalI GATC 4 cut(s) 156, 184, 234, 381
MboI GATC 4 cut(s) 154, 182, 232, 379
MboII GAAGA 4 cut(s) 200, 620, 625, 746
MfeI CAATTG 1 cut(s) 321
MhlI GDGCHC 1 cut(s) 423
MluCI AATT 2 cut(s) 321, 386
MlyI GAGTC 2 cut(s) 248, 470
MnlI CCTC 4 cut(s) 182, 529, 532, 535
Mph1103I ATGCAT 1 cut(s) 674
MspI CCGG 1 cut(s) 92
MunI CAATTG 1 cut(s) 321
MwoI GCNNNNNNNGC 2 cut(s) 649, 711
NdeII GATC 4 cut(s) 154, 182, 232, 379
NlaIII CATG 5 cut(s) 247, 656, 665, 774, 783
NmuCI GTSAC 1 cut(s) 40
NsiI ATGCAT 1 cut(s) 674
NspI RCATGY 1 cut(s) 656
PagI TCATGA 1 cut(s) 661
PcsI WCGNNNNNNNCGW 1 cut(s) 574
PfeI GAWTC 1 cut(s) 297
PinAI ACCGGT 1 cut(s) 91
PkrI GCNGC 3 cut(s) 205, 437, 716
PleI GAGTC 2 cut(s) 248, 469
PpsI GAGTC 2 cut(s) 248, 469
PshAI GACNNNNGTC 1 cut(s) 345
PsiI TTATAA 1 cut(s) 261
PspFI CCCAGC 1 cut(s) 685
PstNI CAGNNNCTG 1 cut(s) 629
RsaI GTAC 2 cut(s) 371, 678
RsaNI GTAC 2 cut(s) 370, 677
SatI GCNGC 3 cut(s) 204, 436, 715
Sau3AI GATC 4 cut(s) 154, 182, 232, 379
SchI GAGTC 2 cut(s) 248, 470
SduI GDGCHC 1 cut(s) 423
SetI ASST 6 cut(s) 88, 365, 398, 431, 483, 699
SfaNI GCATC 2 cut(s) 616, 714
SfcI CTRYAG 1 cut(s) 729
Sse9I AATT 2 cut(s) 321, 386
SsiI CCGC 1 cut(s) 715
SspMI CTAG 1 cut(s) 765
TaaI ACNGT 1 cut(s) 444
TaqI TCGA 3 cut(s) 300, 357, 382
TasI AATT 2 cut(s) 321, 386
TatI WGTACW 1 cut(s) 369
TauI GCSGC 1 cut(s) 717
TfiI GAWTC 1 cut(s) 297
TseFI GTSAC 1 cut(s) 40
TseI GCWGC 2 cut(s) 203, 435
Tsp45I GTSAC 1 cut(s) 40
TspDTI ATGAA 5 cut(s) 84, 260, 318, 564, 650
XceI RCATGY 1 cut(s) 656
XspI CTAG 1 cut(s) 765
Zsp2I ATGCAT 1 cut(s) 674
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.