Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp08

Orthogroup ID

OG0007484

Physical Location & Seq

Genomic Coordinates Forward (+)

13728197 .. 13729081

Gene Structure 885 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.8G106000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 885 bp

ATGGAAATCTATCACGAGAGCGATCAAGGATTCTTCTATGATATCAAGCCCCTAATCGCCACACAATTAGTAGACCACCACCCTGATCATGATCATGATCATCAAAATGAGAAATCTTCATCTCCACATGACAGGACTAAACTTGAAATCAACTTCACCCTCTTCGTATACAACAAGTACTACGTCAACCTCTCCGAAGAAGACGAAACCCAAAGCATCGCTATCTGCCAGTATGAAGAGCCCGCCATAACAGCAACACATACAATTGATGATGTGCGCTCGTTAGACACTGAACTCGACGTGGTCAAGCTTTTTCTCTCCGAGCAACTGTACCAACTGAAAATCAAGGACGACGAGTGGCACGATTCAGTCGTGGAGGATATTATAAAGCGTGGTCGTGAAATTGGCAAGTCGGATTCAAAAATTGGGCCCAAAATACTGCGTTTGAGGGTTGACATGAGTATAACCCATATCTTGGAGCTGTGTGATATATGTTCGGATAAAACAGTGCTCGAGAGGGATGCATTGCTCAAGAAGATGCTAAAGAGGACAAGAGTGGTGGCTAATGATGAACAATATGACGAGAATGAGGAGGAGGAGGAGGAGGCGGGTCGAGAAAGAAAACGACTCCGTTTTGTGCGTGAAAATGAGCTTTGCCCTATTTGCATGGAAGAGTTTATTGCAGGATGGGATGAGGTAACTTGCATGCCTTGCTTGCATCCGTTTCATGAGAAATGCATAGGAGGATGGCTTAGAGAGAATCAACACAATTGCCCTGTTTGCCGCTTCAAGTTACCTATTGAACATGGACCACAAGGAAAAGTTGTGGTTGATGAATGTCCTAATTGGTTGATTTCTTCTGATCATGAGAATGAGAATGAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

295

Amino Acids

34.52

Weight (kDa)

4.87

Isoelectric Point (pI)

53.67

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007484)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g07901 FvH4_2g07910
malus_domestica	MD00G1051600.v1.1 MD05G1071800.v1.1 MD10G1083000.v1.1 MD10G1083100.v1.1 MD12G1121000.v1.1
prunus_persica	Prupe.8G106000_v2.0.a1 Prupe.8G106100_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0262371
rosa_laevigata	RLG00000014434 RLG00000014436
rosa_multiflora	Rmu_sc0001544.1_g000008 Rmu_sc0001544.1_g000017
rosa_roxburghii	Rroxscaffold_7G00208000 Rroxscaffold_7G00208010
rosa_rugosa	Rorug05G0596500 Rorug05G0596500
rosa_samantha	Rh6AG117100 Rh6AG117200 Rh6BG111100 Rh6BG111200 Rh6CG108700 Rh6CG108800
rosa_wichuraiana	Rw6G010170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	386
AccB7I	CCANNNNNTGG	1 cut(s)	475
AccI	GTMKAC	2 cut(s)	72, 168
AciI	CCGC	3 cut(s)	243, 608, 784
AfaI	GTAC	2 cut(s)	179, 332
AfiI	CCNNNNNNNGG	1 cut(s)	475
AgsI	TTSAA	4 cut(s)	146, 420, 790, 803
AjiI	CACGTC	1 cut(s)	301
AluBI	AGCT	3 cut(s)	310, 481, 652
AluI	AGCT	3 cut(s)	310, 481, 652
Alw21I	GWGCWC	1 cut(s)	513
Ama87I	CYCGRG	1 cut(s)	512
AoxI	GGCC	1 cut(s)	428
ApaI	GGGCCC	1 cut(s)	432
AspLEI	GCGC	1 cut(s)	279
AspS9I	GGNCC	3 cut(s)	428, 429, 809
AsuHPI	GGTGA	1 cut(s)	148
AvaI	CYCGRG	1 cut(s)	512
AvaII	GGWCC	1 cut(s)	809
BaeGI	GKGCMC	1 cut(s)	432
BanII	GRGCYC	2 cut(s)	243, 432
BauI	CACGAG	1 cut(s)	14
BbsI	GAAGAC	1 cut(s)	207
Bbv12I	GWGCWC	1 cut(s)	513
BccI	CCATC	2 cut(s)	681, 741
BcgI	CGANNNNNNTGC	2 cut(s)	503, 537
BclI	TGATCA	4 cut(s)	85, 91, 97, 862
BisI	GCNGC	1 cut(s)	784
BlsI	GCNGC	1 cut(s)	785
BmcAI	AGTACT	1 cut(s)	179
Bme18I	GGWCC	1 cut(s)	809
BmeT110I	CYCGRG	1 cut(s)	512
BmgBI	CACGTC	1 cut(s)	301
BmgT120I	GGNCC	3 cut(s)	428, 429, 809
BmiI	GGNNCC	1 cut(s)	430
BmsI	GCATC	4 cut(s)	225, 511, 528, 727
BpiI	GAAGAC	1 cut(s)	207
BpuEI	CTTGAG	1 cut(s)	515
BsaBI	GATNNNNATC	2 cut(s)	90, 96
Bsc4I	CCNNNNNNNGG	1 cut(s)	475
Bse1I	ACTGG	1 cut(s)	229
Bse3DI	GCAATG	1 cut(s)	524
Bse8I	GATNNNNATC	2 cut(s)	90, 96
BseGI	GGATG	5 cut(s)	526, 692, 697, 718, 752
BseJI	GATNNNNATC	2 cut(s)	90, 96
BseLI	CCNNNNNNNGG	1 cut(s)	475
BseMI	GCAATG	1 cut(s)	524
BseNI	ACTGG	1 cut(s)	229
BseRI	GAGGAG	5 cut(s)	605, 608, 611, 614, 617
BseSI	GKGCMC	1 cut(s)	432
BshFI	GGCC	1 cut(s)	430
BsiHKAI	GWGCWC	1 cut(s)	513
BsiHKCI	CYCGRG	1 cut(s)	512
BslI	CCNNNNNNNGG	1 cut(s)	475
BsnI	GGCC	1 cut(s)	430
BsoBI	CYCGRG	1 cut(s)	512
Bsp120I	GGGCCC	1 cut(s)	428
Bsp1286I	GDGCHC	3 cut(s)	243, 432, 513
Bsp143I	GATC	5 cut(s)	22, 85, 91, 97, 862
BspACI	CCGC	3 cut(s)	243, 608, 784
BspANI	GGCC	1 cut(s)	430
BspHI	TCATGA	4 cut(s)	88, 94, 727, 865
BspLI	GGNNCC	1 cut(s)	430
BspQI	GCTCTTC	1 cut(s)	231
BsrDI	GCAATG	1 cut(s)	524
BsrI	ACTGG	1 cut(s)	229
BssMI	GATC	5 cut(s)	22, 85, 91, 97, 862
BssNAI	GTATAC	1 cut(s)	169
BssSI	CACGAG	1 cut(s)	14
Bst1107I	GTATAC	1 cut(s)	169
Bst2BI	CACGAG	1 cut(s)	14
Bst4CI	ACNGT	2 cut(s)	330, 508
Bst6I	CTCTTC	3 cut(s)	167, 231, 666
BstAPI	GCANNNNNTGC	1 cut(s)	711
BstC8I	GCNNGC	3 cut(s)	243, 707, 716
BstDEI	CTNAG	1 cut(s)	752
BstF5I	GGATG	5 cut(s)	526, 692, 697, 718, 752
BstHHI	GCGC	1 cut(s)	279
BstKTI	GATC	5 cut(s)	25, 88, 94, 100, 865
BstMBI	GATC	5 cut(s)	22, 85, 91, 97, 862
BstMWI	GCNNNNNNNGC	5 cut(s)	251, 663, 711, 715, 780
BstNSI	RCATGY	1 cut(s)	709
BstSLI	GKGCMC	1 cut(s)	432
BstV2I	GAAGAC	1 cut(s)	207
BstZ17I	GTATAC	1 cut(s)	169
BsuRI	GGCC	1 cut(s)	430
BtgZI	GCGATG	1 cut(s)	202
BtrI	CACGTC	1 cut(s)	301
BtsCI	GGATG	5 cut(s)	526, 692, 697, 718, 752
BtsIMutI	CAGTG	2 cut(s)	288, 513
Cac8I	GCNNGC	3 cut(s)	243, 707, 716
CciI	TCATGA	4 cut(s)	88, 94, 727, 865
CfoI	GCGC	1 cut(s)	279
Cfr13I	GGNCC	3 cut(s)	428, 429, 809
Csp6I	GTAC	2 cut(s)	178, 331
CspCI	CAANNNNNGTGG	2 cut(s)	540, 575
CviAII	CATG	9 cut(s)	89, 95, 128, 457, 667, 706, 728, 806, 866
CviJI	RGCY	8 cut(s)	49, 241, 310, 430, 481, 563, 652, 751
CviKI_1	RGCY	8 cut(s)	49, 241, 310, 430, 481, 563, 652, 751
CviQI	GTAC	2 cut(s)	178, 331
DdeI	CTNAG	1 cut(s)	752
DpnI	GATC	5 cut(s)	24, 87, 93, 99, 864
DpnII	GATC	5 cut(s)	22, 85, 91, 97, 862
Eam1104I	CTCTTC	3 cut(s)	167, 231, 666
EarI	CTCTTC	3 cut(s)	167, 231, 666
Eco24I	GRGCYC	2 cut(s)	243, 432
Eco32I	GATATC	1 cut(s)	43
Eco47I	GGWCC	1 cut(s)	809
Eco88I	CYCGRG	1 cut(s)	512
EcoRV	GATATC	1 cut(s)	43
EcoT22I	ATGCAT	2 cut(s)	526, 740
EcoT38I	GRGCYC	2 cut(s)	243, 432
FaeI	CATG	9 cut(s)	92, 98, 131, 460, 670, 709, 731, 809, 869
FatI	CATG	9 cut(s)	88, 94, 127, 456, 666, 705, 727, 805, 865
FauI	CCCGC	2 cut(s)	250, 601
FbaI	TGATCA	4 cut(s)	85, 91, 97, 862
FblI	GTMKAC	2 cut(s)	72, 168
Fnu4HI	GCNGC	1 cut(s)	784
FokI	GGATG	5 cut(s)	533, 699, 704, 705, 759
FriOI	GRGCYC	2 cut(s)	243, 432
Fsp4HI	GCNGC	1 cut(s)	784
GlaI	GCGC	1 cut(s)	278
GluI	GCNGC	1 cut(s)	784
HaeIII	GGCC	1 cut(s)	430
HhaI	GCGC	1 cut(s)	279
Hin1II	CATG	9 cut(s)	92, 98, 131, 460, 670, 709, 731, 809, 869
Hin6I	GCGC	1 cut(s)	277
HinP1I	GCGC	1 cut(s)	277
HincII	GTYRAC	2 cut(s)	187, 454
HindII	GTYRAC	2 cut(s)	187, 454
HindIII	AAGCTT	1 cut(s)	308
HinfI	GANTC	5 cut(s)	30, 365, 416, 627, 760
HphI	GGTGA	1 cut(s)	148
Hpy166II	GTNNAC	4 cut(s)	73, 169, 187, 454
Hpy188I	TCNGA	5 cut(s)	196, 322, 415, 499, 862
Hpy188III	TCNNGA	9 cut(s)	14, 89, 95, 398, 514, 532, 614, 728, 866
Hpy8I	GTNNAC	4 cut(s)	73, 169, 187, 454
Hpy99I	CGWCG	2 cut(s)	302, 356
HpyCH4III	ACNGT	2 cut(s)	330, 508
HpyCH4IV	ACGT	2 cut(s)	183, 300
HpyCH4V	TGCA	6 cut(s)	524, 666, 683, 705, 718, 738
HpyF10VI	GCNNNNNNNGC	5 cut(s)	251, 663, 711, 715, 780
HpyF3I	CTNAG	1 cut(s)	752
HpySE526I	ACGT	2 cut(s)	183, 300
Hsp92II	CATG	9 cut(s)	92, 98, 131, 460, 670, 709, 731, 809, 869
HspAI	GCGC	1 cut(s)	277
Ksp22I	TGATCA	4 cut(s)	85, 91, 97, 862
Kzo9I	GATC	5 cut(s)	22, 85, 91, 97, 862
LguI	GCTCTTC	1 cut(s)	231
LmnI	GCTCC	1 cut(s)	478
LpnPI	CCDG	5 cut(s)	96, 118, 242, 669, 789
LweI	GCATC	4 cut(s)	225, 511, 528, 727
MaeII	ACGT	2 cut(s)	183, 300
MaeIII	GTNAC	2 cut(s)	697, 792
MalI	GATC	5 cut(s)	24, 87, 93, 99, 864
MboI	GATC	5 cut(s)	22, 85, 91, 97, 862
MboII	GAAGA	9 cut(s)	25, 108, 154, 209, 212, 248, 547, 683, 849
MfeI	CAATTG	2 cut(s)	264, 769
MhlI	GDGCHC	3 cut(s)	243, 432, 513
MluCI	AATT	6 cut(s)	65, 264, 402, 423, 769, 844
MlyI	GAGTC	1 cut(s)	621
MmeI	TCCRAC	1 cut(s)	393
Mph1103I	ATGCAT	2 cut(s)	526, 740
MslI	CAYNNNNRTG	3 cut(s)	93, 105, 870
MunI	CAATTG	2 cut(s)	264, 769
MwoI	GCNNNNNNNGC	5 cut(s)	251, 663, 711, 715, 780
NdeII	GATC	5 cut(s)	22, 85, 91, 97, 862
NlaIII	CATG	9 cut(s)	92, 98, 131, 460, 670, 709, 731, 809, 869
NlaIV	GGNNCC	1 cut(s)	430
NsiI	ATGCAT	2 cut(s)	526, 740
NspI	RCATGY	1 cut(s)	709
PaeI	GCATGC	1 cut(s)	709
PaeR7I	CTCGAG	1 cut(s)	512
PagI	TCATGA	4 cut(s)	88, 94, 727, 865
PciSI	GCTCTTC	1 cut(s)	231
PcsI	WCGNNNNNNNCGW	2 cut(s)	360, 369
PfeI	GAWTC	4 cut(s)	30, 365, 416, 760
PflFI	GACNNNGTC	1 cut(s)	302
PflMI	CCANNNNNTGG	1 cut(s)	475
PkrI	GCNGC	1 cut(s)	785
PleI	GAGTC	1 cut(s)	621
PpsI	GAGTC	1 cut(s)	621
PsiI	TTATAA	1 cut(s)	386
PspN4I	GGNNCC	1 cut(s)	430
PspOMI	GGGCCC	1 cut(s)	428
PspPI	GGNCC	3 cut(s)	428, 429, 809
PsyI	GACNNNGTC	1 cut(s)	302
RsaI	GTAC	2 cut(s)	179, 332
RsaNI	GTAC	2 cut(s)	178, 331
RseI	CAYNNNNRTG	3 cut(s)	93, 105, 870
SapI	GCTCTTC	1 cut(s)	231
SatI	GCNGC	1 cut(s)	784
Sau3AI	GATC	5 cut(s)	22, 85, 91, 97, 862
Sau96I	GGNCC	3 cut(s)	428, 429, 809
ScaI	AGTACT	1 cut(s)	179
SchI	GAGTC	1 cut(s)	621
SduI	GDGCHC	3 cut(s)	243, 432, 513
SetI	ASST	8 cut(s)	186, 192, 303, 312, 483, 654, 699, 799
SfaNI	GCATC	4 cut(s)	225, 511, 528, 727
Sfr274I	CTCGAG	1 cut(s)	512
SinI	GGWCC	1 cut(s)	809
SlaI	CTCGAG	1 cut(s)	512
SmiMI	CAYNNNNRTG	3 cut(s)	93, 105, 870
SmlI	CTYRAG	2 cut(s)	512, 530
SmoI	CTYRAG	2 cut(s)	512, 530
SphI	GCATGC	1 cut(s)	709
Sse9I	AATT	6 cut(s)	65, 264, 402, 423, 769, 844
SsiI	CCGC	3 cut(s)	243, 608, 784
TaaI	ACNGT	2 cut(s)	330, 508
TaiI	ACGT	2 cut(s)	186, 303
TaqI	TCGA	3 cut(s)	297, 513, 613
TasI	AATT	6 cut(s)	65, 264, 402, 423, 769, 844
TatI	WGTACW	1 cut(s)	177
TauI	GCSGC	1 cut(s)	786
TfiI	GAWTC	4 cut(s)	30, 365, 416, 760
TscAI	CASTG	2 cut(s)	295, 513
TspDTI	ATGAA	5 cut(s)	108, 249, 585, 716, 849
TspGWI	ACGGA	2 cut(s)	620, 711
TspRI	CASTG	2 cut(s)	295, 513
Tth111I	GACNNNGTC	1 cut(s)	302
Van91I	CCANNNNNTGG	1 cut(s)	475
VpaK11BI	GGWCC	1 cut(s)	809
XceI	RCATGY	1 cut(s)	709
XhoI	CTCGAG	1 cut(s)	512
XmiI	GTMKAC	2 cut(s)	72, 168
ZrmI	AGTACT	1 cut(s)	179
Zsp2I	ATGCAT	2 cut(s)	526, 740

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.