Rh6CG108700

ubiquitin-protein transferase activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0007484
Physical Location & Seq
Reverse (-)
12449563 .. 12456530
6968 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG108700.1

Sequence Viewer

Length: 780 bp
ATGGAAGGCTATAATCTTCTCATGACTATTTTCACCTACGAAATAAACACTTTTGACAAACCGGACCAGTATGTGGAGGACCCTTCTCAACCTGTGCTCGCCGTTAAGTTTGACTACGCCGAGCATTATAGATATGGCATATACTCCCCACAATATGATACCCCAATCCATCATACTATCAAGAGAGAAGATCCCCATGTAAGTCGATTCACTCTGGCCGAGTTCAAAAGCGACGAAGATGACGAGTGGAAGGAGCGTCTTTATTATGTACTGGACTCATTCAACGTCACTGAGGAAAAGCAAGACGAAATCGTGGATAAGATCATTGAAGTGTTTAACAGAGAAATTGGAACATTGGGTTCGGACAATGATCCAAAGATACTGGCATTGTGTGTAGATATGAAGCTAACGCATTTCCTGGTGTGTCAGCGAGAATTAGTGGCGAGGGAACTGAGAAAGAGGATGCTCAAGAGGGTCAGAGCGGTGAAAGATGAGGAGGTTGAGGAGGATCAATATCGAGAGAGCAGAAAGAGGCGTAAGATCGTAGGTGAGACTGACAGCTGCACCATCTGTTTGGAGGAATTTGGTGCTGAAAACGACGATGTTTTCTGTATGCCGTGCTCGCATGTGTTTCACGGCAAGGAATGCATAGAGAAATGGCTGAGTGAAAATGACAATTGCCCAGTTTGCCGCTTCCAGCTAAATAAGGATGAGAAAATCACTAACGATGCAGAAGACGGCCTGAAATCTTCGAAACAACTAGTAAATCCGTCATATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-RING_2

Protein Analysis

259

Amino Acids

30.6

Weight (kDa)

4.87

Isoelectric Point (pI)

47.63

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-C3HC4_3 PF13920 185 - 233 1.9e-07 Zinc finger, C3HC4 type (RING finger)
zf-RING_2 PF13639 186 - 231 8.3e-14 Ring finger domain
zf-RING_11 PF17123 188 - 214 8.2e-09 RING-like zinc finger
zf-C3HC4_2 PF13923 188 - 230 4.9e-07 Zinc finger, C3HC4 type (RING finger)
zf-C3HC4 PF00097 188 - 230 9.7e-06 Zinc finger, C3HC4 type (RING finger)
zf-rbx1 PF12678 200 - 231 2.2e-06 RING-H2 zinc finger domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 73
AccBSI CCGCTC 1 cut(s) 482
AciI CCGC 2 cut(s) 482, 691
AclWI GGATC 3 cut(s) 185, 365, 516
AcoI YGGCCR 1 cut(s) 216
AcsI RAATTY 1 cut(s) 581
AfaI GTAC 1 cut(s) 270
AfiI CCNNNNNNNGG 1 cut(s) 73
AgsI TTSAA 3 cut(s) 226, 283, 329
AhlI ACTAGT 1 cut(s) 760
AjnI CCWGG 1 cut(s) 417
AluBI AGCT 3 cut(s) 406, 561, 700
AluI AGCT 3 cut(s) 406, 561, 700
Alw21I GWGCWC 2 cut(s) 99, 623
Alw26I GTCTC 1 cut(s) 545
AlwI GGATC 3 cut(s) 185, 365, 516
AoxI GGCC 2 cut(s) 216, 739
ApeKI GCWGC 1 cut(s) 561
ApoI RAATTY 1 cut(s) 581
AspS9I GGNCC 2 cut(s) 64, 79
AsuHPI GGTGA 3 cut(s) 25, 496, 560
AsuII TTCGAA 1 cut(s) 752
AvaII GGWCC 2 cut(s) 64, 79
BbsI GAAGAC 1 cut(s) 741
Bbv12I GWGCWC 2 cut(s) 99, 623
BbvI GCAGC 1 cut(s) 548
BccI CCATC 2 cut(s) 177, 575
BceAI ACGGC 4 cut(s) 86, 601, 652, 754
BciT130I CCWGG 1 cut(s) 419
BcoDI GTCTC 1 cut(s) 545
BcuI ACTAGT 1 cut(s) 760
BfaI CTAG 1 cut(s) 761
BisI GCNGC 2 cut(s) 562, 691
BlsI GCNGC 2 cut(s) 563, 692
Bme1390I CCNGG 1 cut(s) 419
Bme18I GGWCC 2 cut(s) 64, 79
BmgT120I GGNCC 2 cut(s) 64, 79
BmiI GGNNCC 1 cut(s) 81
BmrFI CCNGG 1 cut(s) 419
BmrI ACTGGG 1 cut(s) 677
BmsI GCATC 2 cut(s) 453, 718
BmuI ACTGGG 1 cut(s) 677
BpiI GAAGAC 1 cut(s) 741
Bpu14I TTCGAA 1 cut(s) 752
BpuEI CTTGAG 1 cut(s) 452
BsaBI GATNNNNATC 1 cut(s) 513
BsaWI WCCGGW 1 cut(s) 61
Bsc4I CCNNNNNNNGG 1 cut(s) 73
Bse1I ACTGG 4 cut(s) 67, 276, 387, 683
Bse8I GATNNNNATC 1 cut(s) 513
BseBI CCWGG 1 cut(s) 419
BseGI GGATG 2 cut(s) 468, 715
BseJI GATNNNNATC 1 cut(s) 513
BseLI CCNNNNNNNGG 1 cut(s) 73
BseMII CTCAG 3 cut(s) 282, 443, 653
BseNI ACTGG 4 cut(s) 67, 276, 387, 683
BseRI GAGGAG 2 cut(s) 509, 518
BseXI GCAGC 1 cut(s) 548
BsgI GTGCAG 1 cut(s) 547
BshFI GGCC 2 cut(s) 218, 741
BsiHKAI GWGCWC 2 cut(s) 99, 623
BsiSI CCGG 1 cut(s) 62
BslI CCNNNNNNNGG 1 cut(s) 73
BsmAI GTCTC 1 cut(s) 545
BsmI GAATGC 1 cut(s) 650
BsnI GGCC 2 cut(s) 218, 741
Bsp119I TTCGAA 1 cut(s) 752
Bsp1286I GDGCHC 2 cut(s) 99, 623
Bsp143I GATC 5 cut(s) 190, 321, 370, 508, 540
BspACI CCGC 2 cut(s) 482, 691
BspANI GGCC 2 cut(s) 218, 741
BspCNI CTCAG 3 cut(s) 283, 444, 654
BspHI TCATGA 1 cut(s) 21
BspLI GGNNCC 1 cut(s) 81
BspPI GGATC 3 cut(s) 185, 365, 516
BspT104I TTCGAA 1 cut(s) 752
BsrBI CCGCTC 1 cut(s) 482
BsrI ACTGG 4 cut(s) 67, 276, 387, 683
BssMI GATC 5 cut(s) 190, 321, 370, 508, 540
Bst2UI CCWGG 1 cut(s) 419
BstAPI GCANNNNNTGC 1 cut(s) 645
BstBI TTCGAA 1 cut(s) 752
BstC8I GCNNGC 2 cut(s) 99, 623
BstDEI CTNAG 3 cut(s) 291, 452, 662
BstF5I GGATG 2 cut(s) 468, 715
BstKTI GATC 5 cut(s) 193, 324, 373, 511, 543
BstMAI GTCTC 1 cut(s) 545
BstMBI GATC 5 cut(s) 190, 321, 370, 508, 540
BstMWI GCNNNNNNNGC 3 cut(s) 622, 645, 687
BstNI CCWGG 1 cut(s) 419
BstNSI RCATGY 1 cut(s) 629
BstSCI CCNGG 1 cut(s) 417
BstV1I GCAGC 1 cut(s) 548
BstV2I GAAGAC 1 cut(s) 741
BstX2I RGATCY 1 cut(s) 190
BstXI CCANNNNNNTGG 1 cut(s) 574
BstYI RGATCY 1 cut(s) 190
BsuRI GGCC 2 cut(s) 218, 741
BtsCI GGATG 2 cut(s) 468, 715
BtsIMutI CAGTG 1 cut(s) 288
Cac8I GCNNGC 2 cut(s) 99, 623
CciI TCATGA 1 cut(s) 21
Cfr13I GGNCC 2 cut(s) 64, 79
CseI GACGC 1 cut(s) 245
Csp6I GTAC 1 cut(s) 269
CviAII CATG 3 cut(s) 22, 197, 626
CviJI RGCY 7 cut(s) 9, 218, 406, 561, 661, 700, 741
CviKI_1 RGCY 7 cut(s) 9, 218, 406, 561, 661, 700, 741
CviQI GTAC 1 cut(s) 269
DdeI CTNAG 3 cut(s) 291, 452, 662
DpnI GATC 5 cut(s) 192, 323, 372, 510, 542
DpnII GATC 5 cut(s) 190, 321, 370, 508, 540
EaeI YGGCCR 1 cut(s) 216
Eco47I GGWCC 2 cut(s) 64, 79
EcoO109I RGGNCCY 1 cut(s) 79
EcoRII CCWGG 1 cut(s) 417
EcoT22I ATGCAT 1 cut(s) 650
FaeI CATG 3 cut(s) 25, 200, 629
FatI CATG 3 cut(s) 21, 196, 625
Fnu4HI GCNGC 2 cut(s) 562, 691
FokI GGATG 2 cut(s) 475, 722
Fsp4HI GCNGC 2 cut(s) 562, 691
FspBI CTAG 1 cut(s) 761
GluI GCNGC 2 cut(s) 562, 691
HaeIII GGCC 2 cut(s) 218, 741
HapII CCGG 1 cut(s) 62
HgaI GACGC 1 cut(s) 245
Hin1II CATG 3 cut(s) 25, 200, 629
HinfI GANTC 2 cut(s) 207, 275
HpaII CCGG 1 cut(s) 62
HphI GGTGA 3 cut(s) 25, 496, 560
Hpy188I TCNGA 2 cut(s) 364, 479
Hpy188III TCNNGA 4 cut(s) 22, 181, 469, 518
Hpy99I CGWCG 2 cut(s) 236, 602
HpyAV CCTTC 2 cut(s) 93, 244
HpyCH4IV ACGT 1 cut(s) 285
HpyCH4V TGCA 3 cut(s) 564, 648, 731
HpyF10VI GCNNNNNNNGC 3 cut(s) 622, 645, 687
HpyF3I CTNAG 3 cut(s) 291, 452, 662
HpySE526I ACGT 1 cut(s) 285
Hsp92II CATG 3 cut(s) 25, 200, 629
Kzo9I GATC 5 cut(s) 190, 321, 370, 508, 540
LmnI GCTCC 1 cut(s) 253
Lsp1109I GCAGC 1 cut(s) 548
LweI GCATC 2 cut(s) 453, 718
MaeI CTAG 1 cut(s) 761
MaeII ACGT 1 cut(s) 285
MaeIII GTNAC 1 cut(s) 286
MalI GATC 5 cut(s) 192, 323, 372, 510, 542
MbiI CCGCTC 1 cut(s) 482
MboI GATC 5 cut(s) 190, 321, 370, 508, 540
MboII GAAGA 5 cut(s) 8, 200, 248, 741, 746
MfeI CAATTG 1 cut(s) 676
MflI RGATCY 1 cut(s) 190
MhlI GDGCHC 2 cut(s) 99, 623
MluCI AATT 4 cut(s) 345, 434, 581, 676
MlyI GAGTC 1 cut(s) 269
Mph1103I ATGCAT 1 cut(s) 650
MseI TTAA 2 cut(s) 105, 336
MslI CAYNNNNRTG 1 cut(s) 329
MspA1I CMGCKG 1 cut(s) 561
MspI CCGG 1 cut(s) 62
MspR9I CCNGG 1 cut(s) 419
MunI CAATTG 1 cut(s) 676
Mva1269I GAATGC 1 cut(s) 650
MvaI CCWGG 1 cut(s) 419
MwoI GCNNNNNNNGC 3 cut(s) 622, 645, 687
NdeII GATC 5 cut(s) 190, 321, 370, 508, 540
NlaIII CATG 3 cut(s) 25, 200, 629
NlaIV GGNNCC 1 cut(s) 81
NmeAIII GCCGAG 2 cut(s) 145, 244
NmuCI GTSAC 1 cut(s) 286
NsiI ATGCAT 1 cut(s) 650
NspI RCATGY 1 cut(s) 629
NspV TTCGAA 1 cut(s) 752
PagI TCATGA 1 cut(s) 21
PcsI WCGNNNNNNNCGW 1 cut(s) 240
PctI GAATGC 1 cut(s) 650
PfeI GAWTC 1 cut(s) 207
PflMI CCANNNNNTGG 1 cut(s) 73
PkrI GCNGC 2 cut(s) 563, 692
PleI GAGTC 1 cut(s) 269
PpsI GAGTC 1 cut(s) 269
PpuMI RGGWCCY 1 cut(s) 79
Psp5II RGGWCCY 1 cut(s) 79
Psp6I CCWGG 1 cut(s) 417
PspGI CCWGG 1 cut(s) 417
PspN4I GGNNCC 1 cut(s) 81
PspPI GGNCC 2 cut(s) 64, 79
PspPPI RGGWCCY 1 cut(s) 79
PsuI RGATCY 1 cut(s) 190
PvuII CAGCTG 1 cut(s) 561
RsaI GTAC 1 cut(s) 270
RsaNI GTAC 1 cut(s) 269
RseI CAYNNNNRTG 1 cut(s) 329
SaqAI TTAA 2 cut(s) 105, 336
SatI GCNGC 2 cut(s) 562, 691
Sau3AI GATC 5 cut(s) 190, 321, 370, 508, 540
Sau96I GGNCC 2 cut(s) 64, 79
SchI GAGTC 1 cut(s) 269
ScrFI CCNGG 1 cut(s) 419
SduI GDGCHC 2 cut(s) 99, 623
SetI ASST 8 cut(s) 38, 94, 288, 408, 501, 550, 563, 702
SfaNI GCATC 2 cut(s) 453, 718
SfuI TTCGAA 1 cut(s) 752
SinI GGWCC 2 cut(s) 64, 79
SmiMI CAYNNNNRTG 1 cut(s) 329
SmlI CTYRAG 1 cut(s) 467
SmoI CTYRAG 1 cut(s) 467
SpeI ACTAGT 1 cut(s) 760
Sse9I AATT 4 cut(s) 345, 434, 581, 676
SsiI CCGC 2 cut(s) 482, 691
SspMI CTAG 1 cut(s) 761
StyD4I CCNGG 1 cut(s) 417
TaiI ACGT 1 cut(s) 288
TaqI TCGA 3 cut(s) 205, 517, 752
TasI AATT 4 cut(s) 345, 434, 581, 676
TatI WGTACW 1 cut(s) 268
TauI GCSGC 1 cut(s) 693
TfiI GAWTC 1 cut(s) 207
Tru1I TTAA 2 cut(s) 105, 336
Tru9I TTAA 2 cut(s) 105, 336
TscAI CASTG 1 cut(s) 295
TseFI GTSAC 1 cut(s) 286
TseI GCWGC 1 cut(s) 561
Tsp45I GTSAC 1 cut(s) 286
TspDTI ATGAA 1 cut(s) 416
TspGWI ACGGA 1 cut(s) 759
TspRI CASTG 1 cut(s) 295
Van91I CCANNNNNTGG 1 cut(s) 73
VpaK11BI GGWCC 2 cut(s) 64, 79
XapI RAATTY 1 cut(s) 581
XceI RCATGY 1 cut(s) 629
XspI CTAG 1 cut(s) 761
Zsp2I ATGCAT 1 cut(s) 650
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.