Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr10

Orthogroup ID

OG0007484

Physical Location & Seq

Genomic Coordinates Forward (+)

12196443 .. 12196730

Gene Structure 288 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD10G1083100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 288 bp

ATGCTAAAGAGGGTTAGAGTGGTGGCTGATGCCGATGATGTTAATGAGGAGGAGAGAGGTCGAGGAAGACAAAGACACCCCGTTGTGCGTGAAAGTGAGGTTTGCCCTATTTGTCTGGAAGAGTTTATTGTGGGATCAGAGGATGTAACGTCCATGCCTTGCACACATGTGTTTCATGAAAACTGCATATGGAGATGGTTCAAACAGAGTCACCTTAATTGCCCTATTTGCCATTTCGAGATGTTTATTGAACTTGGATCACAAGGCGACGGAGACATTAGGGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

96

Amino Acids

11.06

Weight (kDa)

5.26

Isoelectric Point (pI)

63.65

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RING_2	PF13639	34 - 77	2.2e-12	Ring finger domain
zf-RING_UBOX	PF13445	35 - 75	2e-10	RING-type zinc-finger
zf-C3HC4_2	PF13923	35 - 77	1e-09	Zinc finger, C3HC4 type (RING finger)
zf-RING_11	PF17123	35 - 63	1.8e-09	RING-like zinc finger
zf-C3HC4	PF00097	35 - 77	8.6e-09	Zinc finger, C3HC4 type (RING finger)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0007484)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g07901 FvH4_2g07910
malus_domestica	MD00G1051600.v1.1 MD05G1071800.v1.1 MD10G1083000.v1.1 MD10G1083100.v1.1 MD12G1121000.v1.1
prunus_persica	Prupe.8G106000_v2.0.a1 Prupe.8G106100_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0262371
rosa_laevigata	RLG00000014434 RLG00000014436
rosa_multiflora	Rmu_sc0001544.1_g000008 Rmu_sc0001544.1_g000017
rosa_roxburghii	Rroxscaffold_7G00208000 Rroxscaffold_7G00208010
rosa_rugosa	Rorug05G0596500 Rorug05G0596500
rosa_samantha	Rh6AG117100 Rh6AG117200 Rh6BG111100 Rh6BG111200 Rh6CG108700 Rh6CG108800
rosa_wichuraiana	Rw6G010170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	142, 265
AflIII	ACRYGT	1 cut(s)	166
AgsI	TTSAA	2 cut(s)	202, 251
AleI	CACNNNNGTG	1 cut(s)	167
Alw26I	GTCTC	1 cut(s)	267
AlwI	GGATC	2 cut(s)	142, 265
AsuHPI	GGTGA	1 cut(s)	203
BbsI	GAAGAC	1 cut(s)	73
BccI	CCATC	1 cut(s)	189
BcoDI	GTCTC	1 cut(s)	267
BmsI	GCATC	1 cut(s)	19
BpiI	GAAGAC	1 cut(s)	73
BseGI	GGATG	1 cut(s)	148
BseRI	GAGGAG	2 cut(s)	62, 65
BsmAI	GTCTC	1 cut(s)	267
Bsp143I	GATC	2 cut(s)	134, 257
BspHI	TCATGA	1 cut(s)	175
BspPI	GGATC	2 cut(s)	142, 265
BssMI	GATC	2 cut(s)	134, 257
Bst6I	CTCTTC	1 cut(s)	114
BstF5I	GGATG	1 cut(s)	148
BstKTI	GATC	2 cut(s)	137, 260
BstMAI	GTCTC	1 cut(s)	267
BstMBI	GATC	2 cut(s)	134, 257
BstMWI	GCNNNNNNNGC	1 cut(s)	228
BstNSI	RCATGY	1 cut(s)	170
BstV2I	GAAGAC	1 cut(s)	73
BtsCI	GGATG	1 cut(s)	148
CciI	TCATGA	1 cut(s)	175
CviAII	CATG	3 cut(s)	154, 167, 176
CviJI	RGCY	1 cut(s)	26
CviKI_1	RGCY	1 cut(s)	26
DpnI	GATC	2 cut(s)	136, 259
DpnII	GATC	2 cut(s)	134, 257
Eam1104I	CTCTTC	1 cut(s)	114
EarI	CTCTTC	1 cut(s)	114
FaeI	CATG	3 cut(s)	157, 170, 179
FaiI	YATR	5 cut(s)	155, 168, 177, 188, 190
FatI	CATG	3 cut(s)	153, 166, 175
FauNDI	CATATG	1 cut(s)	188
FokI	GGATG	1 cut(s)	155
Hin1II	CATG	3 cut(s)	157, 170, 179
HinfI	GANTC	1 cut(s)	208
HphI	GGTGA	1 cut(s)	203
Hpy188I	TCNGA	1 cut(s)	139
Hpy188III	TCNNGA	3 cut(s)	116, 176, 238
Hpy99I	CGWCG	1 cut(s)	272
HpyCH4IV	ACGT	1 cut(s)	149
HpyCH4V	TGCA	2 cut(s)	162, 186
HpyF10VI	GCNNNNNNNGC	1 cut(s)	228
HpySE526I	ACGT	1 cut(s)	149
Hsp92II	CATG	3 cut(s)	157, 170, 179
Kzo9I	GATC	2 cut(s)	134, 257
LpnPI	CCDG	1 cut(s)	101
LweI	GCATC	1 cut(s)	19
MaeII	ACGT	1 cut(s)	149
MaeIII	GTNAC	2 cut(s)	145, 209
MalI	GATC	2 cut(s)	136, 259
MboI	GATC	2 cut(s)	134, 257
MboII	GAAGA	2 cut(s)	78, 131
MluCI	AATT	1 cut(s)	217
MlyI	GAGTC	1 cut(s)	217
MnlI	CCTC	7 cut(s)	3, 40, 43, 50, 56, 91, 133
MseI	TTAA	3 cut(s)	42, 216, 286
MslI	CAYNNNNRTG	1 cut(s)	167
MwoI	GCNNNNNNNGC	1 cut(s)	228
NdeI	CATATG	1 cut(s)	188
NdeII	GATC	2 cut(s)	134, 257
NlaIII	CATG	3 cut(s)	157, 170, 179
NmuCI	GTSAC	1 cut(s)	209
NspI	RCATGY	1 cut(s)	170
OliI	CACNNNNGTG	1 cut(s)	167
PagI	TCATGA	1 cut(s)	175
PciI	ACATGT	1 cut(s)	166
PleI	GAGTC	1 cut(s)	216
PpsI	GAGTC	1 cut(s)	216
PscI	ACATGT	1 cut(s)	166
RseI	CAYNNNNRTG	1 cut(s)	167
SaqAI	TTAA	3 cut(s)	42, 216, 286
Sau3AI	GATC	2 cut(s)	134, 257
SchI	GAGTC	1 cut(s)	217
SetI	ASST	4 cut(s)	61, 102, 152, 216
SfaNI	GCATC	1 cut(s)	19
SmiMI	CAYNNNNRTG	1 cut(s)	167
Sse9I	AATT	1 cut(s)	217
TaiI	ACGT	1 cut(s)	152
TaqI	TCGA	2 cut(s)	61, 237
TasI	AATT	1 cut(s)	217
Tru1I	TTAA	3 cut(s)	42, 216, 286
Tru9I	TTAA	3 cut(s)	42, 216, 286
TseFI	GTSAC	1 cut(s)	209
Tsp45I	GTSAC	1 cut(s)	209
TspDTI	ATGAA	2 cut(s)	164, 192
TspGWI	ACGGA	1 cut(s)	285
XceI	RCATGY	1 cut(s)	170

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.