Rroxscaffold_7G00208010

ubiquitin-protein transferase activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0007484
Physical Location & Seq
Reverse (-)
57989178 .. 57989933
756 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00208010.1

Sequence Viewer

Length: 756 bp
ATGGAAGTAACTCACTCACTCAATCGGTTCTACTTTCACGTCACTCCCCTTGATGCACAACTCAACGAATATCACAAAGAACCTTCACCGGTTCAACTTTTTATCAAGTTTGACTACTACATCAAACACAAATACTTCAATGTCTCACAAGATCATAGAACCCGAACCCTCATTCACCGATCGGAAGAGAGAACTGAAGCGGTGCACCAATCTGATTTGTGCCAGTTAGATCAGAGCCACATGAACAACGACTCGTATAAGAACTGTCTTTTTTACATTCTGTCTGAACTAGGAATCGACGGAAATAATCACAATGCAATAGTCAATGAGATTACAGACTGGGGTCGCATAATTGACAACTTAGAGTACAACAAGGATCGAAAAATACTGAGCTTGTGGGTTTATATTGCAAGTGAGCATATAACCTTTCGCTGCGAAAGGTGTTTGACGGAAAGAGAATCATTGATAAAAAAGAAGCTAAAGAGAGTTAGAGTGGTAAAAGATAATGAGATGGAATGCGATGATGATAATGCGGGAGACGATGAGGAGGACTGTGAAGAAAGAAACAGTCGATGTGTAGTTCGCGAGAGTGAGATTTCCAGTATTTGTATGGAAGAGTTTGCAGTGTTAGATGATGTCTTTTGCACGCCTTGTTGGCATATGTTTCATGACAAATGGCTGGGAGAGAAGCTCCATTGCCCTCTTTGCCGCTTCCAGATTCCTATTGAACATAGAGACTGCAGGGGGCAAAACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-RING_2

Protein Analysis

251

Amino Acids

30.01

Weight (kDa)

5.44

Isoelectric Point (pI)

54.9

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-RING_11 PF17123 201 - 225 1.5e-06 RING-like zinc finger
zf-RING_2 PF13639 201 - 237 8e-06 Ring finger domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 585
AciI CCGC 3 cut(s) 200, 533, 709
AclWI GGATC 1 cut(s) 384
AcuI CTGAAG 1 cut(s) 216
AfaI GTAC 1 cut(s) 368
AgeI ACCGGT 1 cut(s) 88
AgsI TTSAA 3 cut(s) 95, 139, 728
AjiI CACGTC 1 cut(s) 40
AluBI AGCT 3 cut(s) 393, 478, 691
AluI AGCT 3 cut(s) 393, 478, 691
Alw21I GWGCWC 1 cut(s) 207
Alw26I GTCTC 3 cut(s) 148, 531, 729
Alw44I GTGCAC 1 cut(s) 203
AlwI GGATC 1 cut(s) 384
ApaLI GTGCAC 1 cut(s) 203
ApeKI GCWGC 1 cut(s) 432
AsiGI ACCGGT 1 cut(s) 88
AsuHPI GGTGA 2 cut(s) 78, 167
BaeGI GKGCMC 1 cut(s) 207
Bbv12I GWGCWC 1 cut(s) 207
BbvI GCAGC 1 cut(s) 419
BccI CCATC 1 cut(s) 505
BcoDI GTCTC 3 cut(s) 148, 531, 729
BfaI CTAG 2 cut(s) 290, 754
BfmI CTRYAG 1 cut(s) 739
BglI GCCNNNNNGGC 1 cut(s) 655
BisI GCNGC 2 cut(s) 433, 709
BlsI GCNGC 2 cut(s) 434, 710
BmgBI CACGTC 1 cut(s) 40
BmrI ACTGGG 1 cut(s) 349
BmsI GCATC 1 cut(s) 43
BmuI ACTGGG 1 cut(s) 349
BoxI GACNNNNGTC 1 cut(s) 342
BplI GAGNNNNNCTC 2 cut(s) 675, 707
BsaWI WCCGGW 1 cut(s) 88
Bse118I RCCGGY 1 cut(s) 88
Bse1I ACTGG 3 cut(s) 223, 344, 600
Bse3DI GCAATG 1 cut(s) 694
BseMI GCAATG 1 cut(s) 694
BseMII CTCAG 1 cut(s) 380
BseNI ACTGG 3 cut(s) 223, 344, 600
BseRI GAGGAG 1 cut(s) 560
BseSI GKGCMC 1 cut(s) 207
BseXI GCAGC 1 cut(s) 419
BseYI CCCAGC 1 cut(s) 679
Bsh1236I CGCG 1 cut(s) 585
Bsh1285I CGRYCG 1 cut(s) 182
BshTI ACCGGT 1 cut(s) 88
BsiEI CGRYCG 1 cut(s) 182
BsiHKAI GWGCWC 1 cut(s) 207
BsiSI CCGG 1 cut(s) 89
BsmAI GTCTC 3 cut(s) 148, 531, 729
BsmBI CGTCTC 1 cut(s) 531
BsmI GAATGC 1 cut(s) 521
Bsp1286I GDGCHC 1 cut(s) 207
Bsp143I GATC 4 cut(s) 151, 179, 229, 376
Bsp68I TCGCGA 1 cut(s) 585
BspACI CCGC 3 cut(s) 200, 533, 709
BspCNI CTCAG 1 cut(s) 381
BspFNI CGCG 1 cut(s) 585
BspHI TCATGA 1 cut(s) 667
BspMAI CTGCAG 1 cut(s) 743
BspPI GGATC 1 cut(s) 384
BsrDI GCAATG 1 cut(s) 694
BsrFI RCCGGY 1 cut(s) 88
BsrI ACTGG 3 cut(s) 223, 344, 600
BssAI RCCGGY 1 cut(s) 88
BssMI GATC 4 cut(s) 151, 179, 229, 376
Bst4CI ACNGT 3 cut(s) 266, 554, 569
Bst6I CTCTTC 2 cut(s) 180, 609
BstC8I GCNNGC 1 cut(s) 647
BstDEI CTNAG 2 cut(s) 361, 389
BstFNI CGCG 1 cut(s) 585
BstKTI GATC 4 cut(s) 154, 182, 232, 379
BstMAI GTCTC 3 cut(s) 148, 531, 729
BstMBI GATC 4 cut(s) 151, 179, 229, 376
BstMCI CGRYCG 1 cut(s) 182
BstMWI GCNNNNNNNGC 2 cut(s) 655, 705
BstPAI GACNNNNGTC 1 cut(s) 342
BstSFI CTRYAG 1 cut(s) 739
BstSLI GKGCMC 1 cut(s) 207
BstUI CGCG 1 cut(s) 585
BstV1I GCAGC 1 cut(s) 419
BtgZI GCGATG 1 cut(s) 534
BtrI CACGTC 1 cut(s) 40
BtsI GCAGTG 1 cut(s) 630
BtsIMutI CAGTG 1 cut(s) 630
BtuMI TCGCGA 1 cut(s) 585
Cac8I GCNNGC 1 cut(s) 647
CciI TCATGA 1 cut(s) 667
Cfr10I RCCGGY 1 cut(s) 88
Csp6I GTAC 1 cut(s) 367
CspAI ACCGGT 1 cut(s) 88
CviAII CATG 2 cut(s) 241, 668
CviJI RGCY 5 cut(s) 237, 393, 478, 679, 691
CviKI_1 RGCY 5 cut(s) 237, 393, 478, 679, 691
CviQI GTAC 1 cut(s) 367
DdeI CTNAG 2 cut(s) 361, 389
DpnI GATC 4 cut(s) 153, 181, 231, 378
DpnII GATC 4 cut(s) 151, 179, 229, 376
Eam1104I CTCTTC 2 cut(s) 180, 609
EarI CTCTTC 2 cut(s) 180, 609
Eco57I CTGAAG 1 cut(s) 216
Esp3I CGTCTC 1 cut(s) 531
FaeI CATG 2 cut(s) 244, 671
FatI CATG 2 cut(s) 240, 667
FauI CCCGC 1 cut(s) 526
FauNDI CATATG 1 cut(s) 660
Fnu4HI GCNGC 2 cut(s) 433, 709
Fsp4HI GCNGC 2 cut(s) 433, 709
FspBI CTAG 2 cut(s) 290, 754
GluI GCNGC 2 cut(s) 433, 709
GsaI CCCAGC 1 cut(s) 683
HapII CCGG 1 cut(s) 89
Hin1II CATG 2 cut(s) 244, 671
HinfI GANTC 4 cut(s) 251, 294, 458, 718
HpaII CCGG 1 cut(s) 89
HphI GGTGA 2 cut(s) 78, 167
Hpy166II GTNNAC 1 cut(s) 205
Hpy188I TCNGA 4 cut(s) 184, 214, 234, 286
Hpy188III TCNNGA 3 cut(s) 584, 668, 715
Hpy8I GTNNAC 1 cut(s) 205
Hpy99I CGWCG 1 cut(s) 302
HpyAV CCTTC 1 cut(s) 93
HpyCH4III ACNGT 3 cut(s) 266, 554, 569
HpyCH4IV ACGT 1 cut(s) 39
HpyCH4V TGCA 7 cut(s) 56, 205, 317, 410, 623, 645, 741
HpyF10VI GCNNNNNNNGC 2 cut(s) 655, 705
HpyF3I CTNAG 2 cut(s) 361, 389
HpySE526I ACGT 1 cut(s) 39
Hsp92II CATG 2 cut(s) 244, 671
Kzo9I GATC 4 cut(s) 151, 179, 229, 376
LmnI GCTCC 1 cut(s) 696
LpnPI CCDG 7 cut(s) 102, 236, 325, 613, 665, 727, 728
Lsp1109I GCAGC 1 cut(s) 419
LweI GCATC 1 cut(s) 43
MaeI CTAG 2 cut(s) 290, 754
MaeII ACGT 1 cut(s) 39
MaeIII GTNAC 2 cut(s) 7, 40
MalI GATC 4 cut(s) 153, 181, 231, 378
MboI GATC 4 cut(s) 151, 179, 229, 376
MboII GAAGA 3 cut(s) 197, 569, 626
MhlI GDGCHC 1 cut(s) 207
MluCI AATT 1 cut(s) 351
MlyI GAGTC 1 cut(s) 245
MnlI CCTC 4 cut(s) 179, 538, 541, 711
MspI CCGG 1 cut(s) 89
Mva1269I GAATGC 1 cut(s) 521
MvnI CGCG 1 cut(s) 585
MwoI GCNNNNNNNGC 2 cut(s) 655, 705
NdeI CATATG 1 cut(s) 660
NdeII GATC 4 cut(s) 151, 179, 229, 376
NlaIII CATG 2 cut(s) 244, 671
NmuCI GTSAC 1 cut(s) 40
NruI TCGCGA 1 cut(s) 585
PagI TCATGA 1 cut(s) 667
PctI GAATGC 1 cut(s) 521
PfeI GAWTC 3 cut(s) 294, 458, 718
PinAI ACCGGT 1 cut(s) 88
PkrI GCNGC 2 cut(s) 434, 710
Ple19I CGATCG 1 cut(s) 182
PleI GAGTC 1 cut(s) 245
PpsI GAGTC 1 cut(s) 245
PshAI GACNNNNGTC 1 cut(s) 342
PspFI CCCAGC 1 cut(s) 679
PstI CTGCAG 1 cut(s) 743
PvuI CGATCG 1 cut(s) 182
RruI TCGCGA 1 cut(s) 585
RsaI GTAC 1 cut(s) 368
RsaNI GTAC 1 cut(s) 367
SatI GCNGC 2 cut(s) 433, 709
Sau3AI GATC 4 cut(s) 151, 179, 229, 376
SchI GAGTC 1 cut(s) 245
SduI GDGCHC 1 cut(s) 207
SetI ASST 7 cut(s) 42, 85, 395, 428, 443, 480, 693
SfaNI GCATC 1 cut(s) 43
SfcI CTRYAG 1 cut(s) 739
Sse9I AATT 1 cut(s) 351
SsiI CCGC 3 cut(s) 200, 533, 709
SspMI CTAG 2 cut(s) 290, 754
TaaI ACNGT 3 cut(s) 266, 554, 569
TaiI ACGT 1 cut(s) 42
TaqI TCGA 3 cut(s) 297, 379, 571
TasI AATT 1 cut(s) 351
TatI WGTACW 1 cut(s) 366
TauI GCSGC 1 cut(s) 711
TfiI GAWTC 3 cut(s) 294, 458, 718
TscAI CASTG 1 cut(s) 630
TseFI GTSAC 1 cut(s) 40
TseI GCWGC 1 cut(s) 432
Tsp45I GTSAC 1 cut(s) 40
TspDTI ATGAA 2 cut(s) 257, 656
TspGWI ACGGA 2 cut(s) 315, 464
TspRI CASTG 1 cut(s) 630
VneI GTGCAC 1 cut(s) 203
XcmI CCANNNNNNNNNTGG 1 cut(s) 607
XspI CTAG 2 cut(s) 290, 754
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.