Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp08

Orthogroup ID

OG0007484

Physical Location & Seq

Genomic Coordinates Forward (+)

13732366 .. 13733403

Gene Structure 1038 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.8G106100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 771 bp

ATGGAAGCCGCCTATCACGAGCTGCATTTGGCGGAGTTGCCTGACACAAAATTAGACCACCCTGATCGTCATGAGCAATCTTCACCCAGCGTTCCAATTGAGATTGATTTCAAATACTCCATAAACCACAAGGTTTTTGACGGCGATCTATCCGAAGACGGAACCATAACCGGCCTAATCCTTATACACCAATATGAACCTCAAGTGACAATAGCAAAAGCCACGATAGAAGATGTGTGCGGTTTAGAAACCCGAAACGACCTCAAGGGTTTTCTTTCAGAGAATTTGTCCTTGCTTGGAGTCGACGAGGACCCGCAGGATCAATTGGTGGAAATGATTATAGAATTCGGTTGCAAAATTCGCGACTTGGATTCGAACAAGGGGGCTAAAGTACTGCGATTCAGTGCTCATATAAAGAAAGAGCATAACTGGATTCGCTCCGAGAGGGTTCCGAAAGAAAGAGAACTTGAGATGGAAGCGTTGATCAAGAAAACCCTAAAGAGGGTTAGAGTGGTGGCTGCTGATGAAGATGAAGATGAAGACGAGGAGGAGGAGGAGGAGGGTGGGAAAAGAAAAAGAAGACGTGTAGTGCAAGAAAGTGAGGTTTGCCCTATTTGTTTGGAAAAGTTTGTTGTGGGATCAGAAGATGTTGCTTCCATGCCTTGCTCACATGTGTTTCATGGCAACTGCATAGGGCGATGGCTGAAAGGGAGTCACCATAGTTGCCCTATTTGCCGTTTTAAGATGCCTTGGATCACAAGGCAATATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000122 GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005829 GO:0006355 GO:0006357 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0007549 GO:0008150 GO:0008152 GO:0009048 GO:0009056 GO:0009057 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010468 GO:0010498 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0016567 GO:0016740 GO:0019219 GO:0019222 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031974 GO:0031981 GO:0032446 GO:0036211 GO:0040029 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043433 GO:0043632 GO:0044092 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0045892 GO:0045934 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051090 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051603 GO:0060255 GO:0060816 GO:0061630 GO:0061659 GO:0065007 GO:0065009 GO:0070013 GO:0070647 GO:0071704 GO:0080090 GO:0140096 GO:1900095 GO:1901564 GO:1901565 GO:1901575 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PA zf-RING_2

Protein Analysis

257

Amino Acids

29.42

Weight (kDa)

5.22

Isoelectric Point (pI)

61.94

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007484)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g07901 FvH4_2g07910
malus_domestica	MD00G1051600.v1.1 MD05G1071800.v1.1 MD10G1083000.v1.1 MD10G1083100.v1.1 MD12G1121000.v1.1
prunus_persica	Prupe.8G106000_v2.0.a1 Prupe.8G106100_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0262371
rosa_laevigata	RLG00000014434 RLG00000014436
rosa_multiflora	Rmu_sc0001544.1_g000008 Rmu_sc0001544.1_g000017
rosa_roxburghii	Rroxscaffold_7G00208000 Rroxscaffold_7G00208010
rosa_rugosa	Rorug05G0596500 Rorug05G0596500
rosa_samantha	Rh6AG117100 Rh6AG117200 Rh6BG111100 Rh6BG111200 Rh6CG108700 Rh6CG108800
rosa_wichuraiana	Rw6G010170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	303
AccII	CGCG	1 cut(s)	363
AciI	CCGC	4 cut(s)	9, 32, 240, 314
AclWI	GGATC	3 cut(s)	327, 646, 761
AcsI	RAATTY	3 cut(s)	283, 344, 357
AfaI	GTAC	1 cut(s)	393
AfiI	CCNNNNNNNGG	2 cut(s)	501, 502
AflIII	ACRYGT	2 cut(s)	583, 670
AgsI	TTSAA	1 cut(s)	112
AjiI	CACGTC	1 cut(s)	584
AluBI	AGCT	1 cut(s)	22
AluI	AGCT	1 cut(s)	22
Alw21I	GWGCWC	1 cut(s)	409
AlwI	GGATC	3 cut(s)	327, 646, 761
AoxI	GGCC	1 cut(s)	172
ApeKI	GCWGC	2 cut(s)	22, 518
ApoI	RAATTY	3 cut(s)	283, 344, 357
AspS9I	GGNCC	1 cut(s)	310
AsuHPI	GGTGA	2 cut(s)	75, 707
AsuII	TTCGAA	1 cut(s)	374
AvaII	GGWCC	1 cut(s)	310
BauI	CACGAG	1 cut(s)	17
BbsI	GAAGAC	3 cut(s)	162, 546, 586
Bbv12I	GWGCWC	1 cut(s)	409
BbvI	GCAGC	2 cut(s)	9, 505
BccI	CCATC	2 cut(s)	466, 693
BceAI	ACGGC	2 cut(s)	157, 720
BclI	TGATCA	1 cut(s)	483
BisI	GCNGC	3 cut(s)	9, 23, 519
BlsI	GCNGC	3 cut(s)	10, 24, 520
BmcAI	AGTACT	1 cut(s)	393
Bme18I	GGWCC	1 cut(s)	310
BmgBI	CACGTC	1 cut(s)	584
BmgT120I	GGNCC	1 cut(s)	310
BmiI	GGNNCC	3 cut(s)	163, 312, 450
BmsI	GCATC	1 cut(s)	735
BpiI	GAAGAC	3 cut(s)	162, 546, 586
Bpu14I	TTCGAA	1 cut(s)	374
BpuEI	CTTGAG	3 cut(s)	186, 248, 488
BsaJI	CCNNGG	1 cut(s)	749
Bsc4I	CCNNNNNNNGG	2 cut(s)	501, 502
Bse118I	RCCGGY	1 cut(s)	170
Bse1I	ACTGG	1 cut(s)	434
BseDI	CCNNGG	1 cut(s)	749
BseLI	CCNNNNNNNGG	2 cut(s)	501, 502
BseNI	ACTGG	1 cut(s)	434
BseRI	GAGGAG	5 cut(s)	560, 563, 566, 569, 572
BseXI	GCAGC	2 cut(s)	9, 505
BseYI	CCCAGC	1 cut(s)	86
Bsh1236I	CGCG	1 cut(s)	363
BshFI	GGCC	1 cut(s)	174
BsiHKAI	GWGCWC	1 cut(s)	409
BsiSI	CCGG	1 cut(s)	171
BslI	CCNNNNNNNGG	2 cut(s)	501, 502
BsnI	GGCC	1 cut(s)	174
Bsp119I	TTCGAA	1 cut(s)	374
Bsp1286I	GDGCHC	1 cut(s)	409
Bsp143I	GATC	6 cut(s)	64, 145, 319, 483, 638, 753
Bsp68I	TCGCGA	1 cut(s)	363
BspACI	CCGC	4 cut(s)	9, 32, 240, 314
BspANI	GGCC	1 cut(s)	174
BspFNI	CGCG	1 cut(s)	363
BspHI	TCATGA	1 cut(s)	70
BspLI	GGNNCC	3 cut(s)	163, 312, 450
BspPI	GGATC	3 cut(s)	327, 646, 761
BspT104I	TTCGAA	1 cut(s)	374
BsrFI	RCCGGY	1 cut(s)	170
BsrI	ACTGG	1 cut(s)	434
BssAI	RCCGGY	1 cut(s)	170
BssECI	CCNNGG	1 cut(s)	749
BssMI	GATC	6 cut(s)	64, 145, 319, 483, 638, 753
BssSI	CACGAG	1 cut(s)	17
BssT1I	CCWWGG	1 cut(s)	749
Bst2BI	CACGAG	1 cut(s)	17
BstBI	TTCGAA	1 cut(s)	374
BstFNI	CGCG	1 cut(s)	363
BstKTI	GATC	6 cut(s)	67, 148, 322, 486, 641, 756
BstMBI	GATC	6 cut(s)	64, 145, 319, 483, 638, 753
BstMWI	GCNNNNNNNGC	2 cut(s)	360, 732
BstNSI	RCATGY	1 cut(s)	674
BstUI	CGCG	1 cut(s)	363
BstV1I	GCAGC	2 cut(s)	9, 505
BstV2I	GAAGAC	3 cut(s)	162, 546, 586
BsuRI	GGCC	1 cut(s)	174
BtgZI	GCGATG	1 cut(s)	712
BtrI	CACGTC	1 cut(s)	584
BtsIMutI	CAGTG	1 cut(s)	409
BtuMI	TCGCGA	1 cut(s)	363
CciI	TCATGA	1 cut(s)	70
Cfr10I	RCCGGY	1 cut(s)	170
Cfr13I	GGNCC	1 cut(s)	310
Csp6I	GTAC	1 cut(s)	392
CviAII	CATG	4 cut(s)	71, 658, 671, 680
CviJI	RGCY	7 cut(s)	8, 22, 174, 221, 386, 518, 703
CviKI_1	RGCY	7 cut(s)	8, 22, 174, 221, 386, 518, 703
CviQI	GTAC	1 cut(s)	392
DpnI	GATC	6 cut(s)	66, 147, 321, 485, 640, 755
DpnII	GATC	6 cut(s)	64, 145, 319, 483, 638, 753
EciI	GGCGGA	1 cut(s)	47
Eco130I	CCWWGG	1 cut(s)	749
Eco47I	GGWCC	1 cut(s)	310
EcoO109I	RGGNCCY	1 cut(s)	310
EcoRI	GAATTC	1 cut(s)	344
EcoT14I	CCWWGG	1 cut(s)	749
ErhI	CCWWGG	1 cut(s)	749
FaeI	CATG	4 cut(s)	74, 661, 674, 683
FatI	CATG	4 cut(s)	70, 657, 670, 679
FauI	CCCGC	1 cut(s)	321
FbaI	TGATCA	1 cut(s)	483
FblI	GTMKAC	1 cut(s)	303
Fnu4HI	GCNGC	3 cut(s)	9, 23, 519
Fsp4HI	GCNGC	3 cut(s)	9, 23, 519
GluI	GCNGC	3 cut(s)	9, 23, 519
GsaI	CCCAGC	1 cut(s)	90
HaeIII	GGCC	1 cut(s)	174
HapII	CCGG	1 cut(s)	171
Hin1II	CATG	4 cut(s)	74, 661, 674, 683
HincII	GTYRAC	1 cut(s)	304
HindII	GTYRAC	1 cut(s)	304
HinfI	GANTC	5 cut(s)	300, 371, 399, 433, 712
HpaII	CCGG	1 cut(s)	171
HphI	GGTGA	2 cut(s)	75, 707
Hpy166II	GTNNAC	1 cut(s)	304
Hpy188I	TCNGA	5 cut(s)	154, 280, 442, 453, 643
Hpy188III	TCNNGA	4 cut(s)	17, 71, 362, 487
Hpy8I	GTNNAC	1 cut(s)	304
Hpy99I	CGWCG	1 cut(s)	308
HpyCH4IV	ACGT	1 cut(s)	583
HpyCH4V	TGCA	4 cut(s)	25, 354, 592, 690
HpyF10VI	GCNNNNNNNGC	2 cut(s)	360, 732
HpySE526I	ACGT	1 cut(s)	583
Hsp92II	CATG	4 cut(s)	74, 661, 674, 683
Ksp22I	TGATCA	1 cut(s)	483
Kzo9I	GATC	6 cut(s)	64, 145, 319, 483, 638, 753
LmnI	GCTCC	1 cut(s)	443
LpnPI	CCDG	6 cut(s)	54, 75, 100, 184, 302, 415
Lsp1109I	GCAGC	2 cut(s)	9, 505
LweI	GCATC	1 cut(s)	735
MaeII	ACGT	1 cut(s)	583
MaeIII	GTNAC	2 cut(s)	205, 713
MalI	GATC	6 cut(s)	66, 147, 321, 485, 640, 755
MboI	GATC	6 cut(s)	64, 145, 319, 483, 638, 753
MboII	GAAGA	8 cut(s)	72, 167, 242, 539, 545, 551, 591, 656
MfeI	CAATTG	2 cut(s)	96, 323
MhlI	GDGCHC	1 cut(s)	409
MluCI	AATT	6 cut(s)	50, 96, 283, 323, 344, 357
MlyI	GAGTC	2 cut(s)	309, 721
MseI	TTAA	1 cut(s)	741
MslI	CAYNNNNRTG	1 cut(s)	192
MspI	CCGG	1 cut(s)	171
MunI	CAATTG	2 cut(s)	96, 323
MvnI	CGCG	1 cut(s)	363
MwoI	GCNNNNNNNGC	2 cut(s)	360, 732
NdeII	GATC	6 cut(s)	64, 145, 319, 483, 638, 753
NlaIII	CATG	4 cut(s)	74, 661, 674, 683
NlaIV	GGNNCC	3 cut(s)	163, 312, 450
NmuCI	GTSAC	2 cut(s)	205, 713
NruI	TCGCGA	1 cut(s)	363
NspI	RCATGY	1 cut(s)	674
NspV	TTCGAA	1 cut(s)	374
PagI	TCATGA	1 cut(s)	70
PciI	ACATGT	1 cut(s)	670
PfeI	GAWTC	3 cut(s)	371, 399, 433
PkrI	GCNGC	3 cut(s)	10, 24, 520
PleI	GAGTC	2 cut(s)	308, 720
PpsI	GAGTC	2 cut(s)	308, 720
PpuMI	RGGWCCY	1 cut(s)	310
PscI	ACATGT	1 cut(s)	670
Psp5II	RGGWCCY	1 cut(s)	310
PspFI	CCCAGC	1 cut(s)	86
PspN4I	GGNNCC	3 cut(s)	163, 312, 450
PspPI	GGNCC	1 cut(s)	310
PspPPI	RGGWCCY	1 cut(s)	310
RruI	TCGCGA	1 cut(s)	363
RsaI	GTAC	1 cut(s)	393
RsaNI	GTAC	1 cut(s)	392
RseI	CAYNNNNRTG	1 cut(s)	192
SalI	GTCGAC	1 cut(s)	302
SaqAI	TTAA	1 cut(s)	741
SatI	GCNGC	3 cut(s)	9, 23, 519
Sau3AI	GATC	6 cut(s)	64, 145, 319, 483, 638, 753
Sau96I	GGNCC	1 cut(s)	310
ScaI	AGTACT	1 cut(s)	393
SchI	GAGTC	2 cut(s)	309, 721
SduI	GDGCHC	1 cut(s)	409
SetI	ASST	6 cut(s)	24, 135, 202, 264, 586, 606
SfaNI	GCATC	1 cut(s)	735
SfuI	TTCGAA	1 cut(s)	374
SinI	GGWCC	1 cut(s)	310
SmiMI	CAYNNNNRTG	1 cut(s)	192
SmlI	CTYRAG	3 cut(s)	201, 263, 467
SmoI	CTYRAG	3 cut(s)	201, 263, 467
Sse9I	AATT	6 cut(s)	50, 96, 283, 323, 344, 357
SsiI	CCGC	4 cut(s)	9, 32, 240, 314
SspI	AATATT	1 cut(s)	767
StyI	CCWWGG	1 cut(s)	749
TaiI	ACGT	1 cut(s)	586
TaqI	TCGA	2 cut(s)	303, 374
TasI	AATT	6 cut(s)	50, 96, 283, 323, 344, 357
TatI	WGTACW	1 cut(s)	391
TauI	GCSGC	1 cut(s)	11
TfiI	GAWTC	3 cut(s)	371, 399, 433
Tru1I	TTAA	1 cut(s)	741
Tru9I	TTAA	1 cut(s)	741
TscAI	CASTG	1 cut(s)	409
TseFI	GTSAC	2 cut(s)	205, 713
TseI	GCWGC	2 cut(s)	22, 518
Tsp45I	GTSAC	2 cut(s)	205, 713
TspDTI	ATGAA	5 cut(s)	210, 540, 546, 552, 668
TspGWI	ACGGA	1 cut(s)	174
TspRI	CASTG	1 cut(s)	409
VpaK11BI	GGWCC	1 cut(s)	310
XapI	RAATTY	3 cut(s)	283, 344, 357
XceI	RCATGY	1 cut(s)	674
XmiI	GTMKAC	1 cut(s)	303
ZrmI	AGTACT	1 cut(s)	393

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.