Rh6BG111100

ubiquitin-protein transferase activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0007484
Physical Location & Seq
Reverse (-)
17303110 .. 17306466
3357 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG111100.1

Sequence Viewer

Length: 1095 bp
ATGGAAGGCTATAATCTTCTCATGACTATTTTCACCTACGAAATAAACACTTTTGACAAACCGGACCAGTATGTGGAGGACCCTTCTCAACCTGTGCTCGCCGTTAAGTTTGACTACGCCGAGCATCATAGATATGGCATATACTCCCCACAATATGATACCCCAATCCATCATACTATCAAGAGAGAAGATCCCCATGTAAGTCGATTCACTCTGGCCGAGTTCAAAAGCGACGAAGATGACGAGTGGAAGGAGCGTCTTTATTATGTACTGGACTCATTCAACGTCACTGAGGAAAAGCAAGACGAAATCGTGGATAAGATCTTTGAAGTGTTTAACAGAGAAATTGGAACATTGGGTTCGGACAATGATCCAAAGATACTGGCATTGTGTGTAGACATGAAGCTAACGCATTTCCTGGTGTGTCAGCGAGAATTAGTGGCAAGGGAACTGAGAAAGAGGATGCTCAAGAGGGTCAGAGCGGTGAAAGATGAGGAGGTTGAGGAGGATCAATATCGAGAGAGCAGAAAGAGGCGTAAGATCGTCGGTGAAAGTGACAGCTGCACCATCTGTTTGGAGGAATTTGGTGCTGAAAACGACGATGTTTTCTGTATGCCGTGCTCGCATGTGTTTCACGGCAAGGAATGCATAGAGAAATGGCTGAGAGAAAATGACAATTGCCCAGTTTGCCGCTTCCAGCTACATGGTTTATCGTGGACTTCCGTTGACGACAATTCTTTAGCGTCCCTTCATGGGACTCTCTTTAGGCTTCAGCCTCATCCTCTTCTTGGTTGCACTTCTACTTCCAAGCCCTTCATTGGCATGTTGCTCGTAAACGAAGTAGGTCGCTTAAGCGTGGTTGGTTTGGCTTTACCAGCACCAAAAGGCTTTGGTTGGACTGCAAACTTTGGTGATGGTGGTTGTTGGGACGGGTGGGATTCGGGTAGAAGGCCGGATATGTTTAATTTCTTCCATGGTGGGTTCAAATGGTTGGTTTCACCATACGGGGATCCCTTAGTTTTGGCAGATCTAGGGTGCACGGGGTCAATAGTGATGGCACTGTTCTCTCGGTCACAAAGGGTAGTGGCGATGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-RING_2

Protein Analysis

364

Amino Acids

41.86

Weight (kDa)

5.24

Isoelectric Point (pI)

41.86

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-C3HC4_3 PF13920 185 - 233 1.9e-07 Zinc finger, C3HC4 type (RING finger)
zf-RING_2 PF13639 186 - 231 5.7e-14 Ring finger domain
zf-RING_11 PF17123 188 - 214 1.3e-08 RING-like zinc finger
zf-C3HC4_2 PF13923 188 - 230 3.1e-07 Zinc finger, C3HC4 type (RING finger)
zf-rbx1 PF12678 200 - 231 1.8e-06 RING-H2 zinc finger domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 73
AccBSI CCGCTC 1 cut(s) 482
AccI GTMKAC 1 cut(s) 396
AciI CCGC 2 cut(s) 482, 691
AclWI GGATC 5 cut(s) 185, 365, 516, 1004, 1017
AcoI YGGCCR 1 cut(s) 216
AcsI RAATTY 1 cut(s) 581
AcuI CTGAAG 1 cut(s) 755
AfaI GTAC 1 cut(s) 270
AfiI CCNNNNNNNGG 4 cut(s) 73, 753, 788, 818
AflII CTTAAG 1 cut(s) 850
AgsI TTSAA 4 cut(s) 226, 283, 329, 985
AjnI CCWGG 1 cut(s) 417
AluBI AGCT 3 cut(s) 406, 561, 700
AluI AGCT 3 cut(s) 406, 561, 700
Alw21I GWGCWC 3 cut(s) 99, 623, 1040
Alw44I GTGCAC 1 cut(s) 1036
AlwI GGATC 5 cut(s) 185, 365, 516, 1004, 1017
AoxI GGCC 2 cut(s) 216, 950
ApaLI GTGCAC 1 cut(s) 1036
ApeKI GCWGC 1 cut(s) 561
ApoI RAATTY 1 cut(s) 581
AspS9I GGNCC 2 cut(s) 64, 79
AsuHPI GGTGA 5 cut(s) 25, 496, 560, 923, 990
AvaII GGWCC 2 cut(s) 64, 79
BaeGI GKGCMC 1 cut(s) 1040
BamHI GGATCC 1 cut(s) 1009
Bbv12I GWGCWC 3 cut(s) 99, 623, 1040
BbvI GCAGC 1 cut(s) 548
BccI CCATC 4 cut(s) 177, 575, 908, 1048
BceAI ACGGC 3 cut(s) 86, 601, 652
BcgI CGANNNNNNTGC 2 cut(s) 811, 845
BciT130I CCWGG 1 cut(s) 419
BfaI CTAG 1 cut(s) 1031
BfrI CTTAAG 1 cut(s) 850
BglII AGATCT 2 cut(s) 321, 1027
BisI GCNGC 2 cut(s) 562, 691
BlsI GCNGC 2 cut(s) 563, 692
Bme1390I CCNGG 1 cut(s) 419
Bme18I GGWCC 2 cut(s) 64, 79
BmgT120I GGNCC 2 cut(s) 64, 79
BmiI GGNNCC 2 cut(s) 81, 1011
BmrFI CCNGG 1 cut(s) 419
BmrI ACTGGG 1 cut(s) 677
BmsI GCATC 2 cut(s) 133, 453
BmuI ACTGGG 1 cut(s) 677
BpuEI CTTGAG 1 cut(s) 452
BsaBI GATNNNNATC 1 cut(s) 513
BsaJI CCNNGG 1 cut(s) 973
BsaWI WCCGGW 1 cut(s) 61
Bsc4I CCNNNNNNNGG 4 cut(s) 73, 753, 788, 818
Bse1I ACTGG 4 cut(s) 67, 276, 387, 683
Bse8I GATNNNNATC 1 cut(s) 513
BseBI CCWGG 1 cut(s) 419
BseDI CCNNGG 1 cut(s) 973
BseGI GGATG 2 cut(s) 468, 778
BseJI GATNNNNATC 1 cut(s) 513
BseLI CCNNNNNNNGG 4 cut(s) 73, 753, 788, 818
BseMII CTCAG 3 cut(s) 282, 443, 653
BseNI ACTGG 4 cut(s) 67, 276, 387, 683
BseRI GAGGAG 2 cut(s) 509, 518
BseSI GKGCMC 1 cut(s) 1040
BseXI GCAGC 1 cut(s) 548
BsgI GTGCAG 1 cut(s) 547
BshFI GGCC 2 cut(s) 218, 952
BsiHKAI GWGCWC 3 cut(s) 99, 623, 1040
BsiSI CCGG 2 cut(s) 62, 953
BslFI GGGAC 3 cut(s) 730, 769, 941
BslI CCNNNNNNNGG 4 cut(s) 73, 753, 788, 818
BsmFI GGGAC 3 cut(s) 730, 769, 941
BsmI GAATGC 1 cut(s) 650
BsnI GGCC 2 cut(s) 218, 952
Bsp1286I GDGCHC 3 cut(s) 99, 623, 1040
Bsp143I GATC 7 cut(s) 190, 321, 370, 508, 540, 1009, 1027
Bsp19I CCATGG 1 cut(s) 973
BspACI CCGC 2 cut(s) 482, 691
BspANI GGCC 2 cut(s) 218, 952
BspCNI CTCAG 3 cut(s) 283, 444, 654
BspHI TCATGA 1 cut(s) 21
BspLI GGNNCC 2 cut(s) 81, 1011
BspPI GGATC 5 cut(s) 185, 365, 516, 1004, 1017
BspTI CTTAAG 1 cut(s) 850
BsrBI CCGCTC 1 cut(s) 482
BsrI ACTGG 4 cut(s) 67, 276, 387, 683
BssECI CCNNGG 1 cut(s) 973
BssMI GATC 7 cut(s) 190, 321, 370, 508, 540, 1009, 1027
BssT1I CCWWGG 1 cut(s) 973
Bst2UI CCWGG 1 cut(s) 419
Bst4CI ACNGT 1 cut(s) 1062
Bst6I CTCTTC 1 cut(s) 789
BstAFI CTTAAG 1 cut(s) 850
BstAPI GCANNNNNTGC 1 cut(s) 645
BstC8I GCNNGC 2 cut(s) 99, 623
BstDEI CTNAG 4 cut(s) 291, 452, 662, 1015
BstDSI CCRYGG 1 cut(s) 973
BstF5I GGATG 2 cut(s) 468, 778
BstKTI GATC 7 cut(s) 193, 324, 373, 511, 543, 1012, 1030
BstMBI GATC 7 cut(s) 190, 321, 370, 508, 540, 1009, 1027
BstMWI GCNNNNNNNGC 4 cut(s) 622, 645, 687, 875
BstNI CCWGG 1 cut(s) 419
BstNSI RCATGY 2 cut(s) 629, 826
BstSCI CCNGG 1 cut(s) 417
BstSLI GKGCMC 1 cut(s) 1040
BstV1I GCAGC 1 cut(s) 548
BstX2I RGATCY 4 cut(s) 190, 321, 1009, 1027
BstXI CCANNNNNNTGG 2 cut(s) 574, 704
BstYI RGATCY 4 cut(s) 190, 321, 1009, 1027
BsuRI GGCC 2 cut(s) 218, 952
BtgI CCRYGG 1 cut(s) 973
BtsCI GGATG 2 cut(s) 468, 778
BtsIMutI CAGTG 2 cut(s) 288, 1058
Cac8I GCNNGC 2 cut(s) 99, 623
CciI TCATGA 1 cut(s) 21
Cfr13I GGNCC 2 cut(s) 64, 79
CseI GACGC 2 cut(s) 245, 732
Csp6I GTAC 1 cut(s) 269
CviAII CATG 8 cut(s) 22, 197, 400, 626, 704, 752, 823, 974
CviQI GTAC 1 cut(s) 269
DdeI CTNAG 4 cut(s) 291, 452, 662, 1015
DpnI GATC 7 cut(s) 192, 323, 372, 510, 542, 1011, 1029
DpnII GATC 7 cut(s) 190, 321, 370, 508, 540, 1009, 1027
EaeI YGGCCR 1 cut(s) 216
Eam1104I CTCTTC 1 cut(s) 789
EarI CTCTTC 1 cut(s) 789
Eco130I CCWWGG 1 cut(s) 973
Eco47I GGWCC 2 cut(s) 64, 79
Eco57I CTGAAG 1 cut(s) 755
EcoO109I RGGNCCY 1 cut(s) 79
EcoRII CCWGG 1 cut(s) 417
EcoT14I CCWWGG 1 cut(s) 973
EcoT22I ATGCAT 1 cut(s) 650
ErhI CCWWGG 1 cut(s) 973
FaeI CATG 8 cut(s) 25, 200, 403, 629, 707, 755, 826, 977
FaqI GGGAC 3 cut(s) 730, 769, 941
FatI CATG 8 cut(s) 21, 196, 399, 625, 703, 751, 822, 973
FblI GTMKAC 1 cut(s) 396
Fnu4HI GCNGC 2 cut(s) 562, 691
FokI GGATG 2 cut(s) 475, 765
Fsp4HI GCNGC 2 cut(s) 562, 691
FspBI CTAG 1 cut(s) 1031
GluI GCNGC 2 cut(s) 562, 691
HaeIII GGCC 2 cut(s) 218, 952
HapII CCGG 2 cut(s) 62, 953
HgaI GACGC 2 cut(s) 245, 732
Hin1II CATG 8 cut(s) 25, 200, 403, 629, 707, 755, 826, 977
HincII GTYRAC 1 cut(s) 727
HindII GTYRAC 1 cut(s) 727
HinfI GANTC 4 cut(s) 207, 275, 757, 938
HpaII CCGG 2 cut(s) 62, 953
HphI GGTGA 5 cut(s) 25, 496, 560, 923, 990
Hpy166II GTNNAC 5 cut(s) 397, 717, 727, 835, 1038
Hpy188I TCNGA 2 cut(s) 364, 479
Hpy188III TCNNGA 4 cut(s) 22, 181, 469, 518
Hpy8I GTNNAC 5 cut(s) 397, 717, 727, 835, 1038
Hpy99I CGWCG 3 cut(s) 236, 548, 602
HpyAV CCTTC 5 cut(s) 93, 244, 758, 823, 942
HpyCH4III ACNGT 1 cut(s) 1062
HpyCH4IV ACGT 1 cut(s) 285
HpyCH4V TGCA 5 cut(s) 564, 648, 795, 902, 1038
HpyF10VI GCNNNNNNNGC 4 cut(s) 622, 645, 687, 875
HpyF3I CTNAG 4 cut(s) 291, 452, 662, 1015
HpySE526I ACGT 1 cut(s) 285
Hsp92II CATG 8 cut(s) 25, 200, 403, 629, 707, 755, 826, 977
Kzo9I GATC 7 cut(s) 190, 321, 370, 508, 540, 1009, 1027
LmnI GCTCC 1 cut(s) 253
Lsp1109I GCAGC 1 cut(s) 548
LweI GCATC 2 cut(s) 133, 453
MaeI CTAG 1 cut(s) 1031
MaeII ACGT 1 cut(s) 285
MaeIII GTNAC 3 cut(s) 286, 554, 1071
MalI GATC 7 cut(s) 192, 323, 372, 510, 542, 1011, 1029
MbiI CCGCTC 1 cut(s) 482
MboI GATC 7 cut(s) 190, 321, 370, 508, 540, 1009, 1027
MboII GAAGA 5 cut(s) 8, 200, 248, 776, 961
MfeI CAATTG 1 cut(s) 676
MflI RGATCY 4 cut(s) 190, 321, 1009, 1027
MhlI GDGCHC 3 cut(s) 99, 623, 1040
MluCI AATT 6 cut(s) 345, 434, 581, 676, 733, 964
MlyI GAGTC 2 cut(s) 269, 751
MmeI TCCRAC 1 cut(s) 875
Mph1103I ATGCAT 1 cut(s) 650
MseI TTAA 4 cut(s) 105, 336, 851, 963
MslI CAYNNNNRTG 2 cut(s) 132, 821
MspA1I CMGCKG 1 cut(s) 561
MspCI CTTAAG 1 cut(s) 850
MspI CCGG 2 cut(s) 62, 953
MspR9I CCNGG 1 cut(s) 419
MunI CAATTG 1 cut(s) 676
Mva1269I GAATGC 1 cut(s) 650
MvaI CCWGG 1 cut(s) 419
MwoI GCNNNNNNNGC 4 cut(s) 622, 645, 687, 875
NcoI CCATGG 1 cut(s) 973
NdeII GATC 7 cut(s) 190, 321, 370, 508, 540, 1009, 1027
NlaIII CATG 8 cut(s) 25, 200, 403, 629, 707, 755, 826, 977
NlaIV GGNNCC 2 cut(s) 81, 1011
NmeAIII GCCGAG 2 cut(s) 145, 244
NmuCI GTSAC 3 cut(s) 286, 554, 1071
NsiI ATGCAT 1 cut(s) 650
NspI RCATGY 2 cut(s) 629, 826
PagI TCATGA 1 cut(s) 21
PcsI WCGNNNNNNNCGW 1 cut(s) 240
PctI GAATGC 1 cut(s) 650
PfeI GAWTC 2 cut(s) 207, 938
PflMI CCANNNNNTGG 1 cut(s) 73
PkrI GCNGC 2 cut(s) 563, 692
PleI GAGTC 2 cut(s) 269, 751
PpsI GAGTC 2 cut(s) 269, 751
PpuMI RGGWCCY 1 cut(s) 79
Psp5II RGGWCCY 1 cut(s) 79
Psp6I CCWGG 1 cut(s) 417
PspGI CCWGG 1 cut(s) 417
PspN4I GGNNCC 2 cut(s) 81, 1011
PspPI GGNCC 2 cut(s) 64, 79
PspPPI RGGWCCY 1 cut(s) 79
PsuI RGATCY 4 cut(s) 190, 321, 1009, 1027
PvuII CAGCTG 1 cut(s) 561
RsaI GTAC 1 cut(s) 270
RsaNI GTAC 1 cut(s) 269
RseI CAYNNNNRTG 2 cut(s) 132, 821
SaqAI TTAA 4 cut(s) 105, 336, 851, 963
SatI GCNGC 2 cut(s) 562, 691
Sau3AI GATC 7 cut(s) 190, 321, 370, 508, 540, 1009, 1027
Sau96I GGNCC 2 cut(s) 64, 79
SchI GAGTC 2 cut(s) 269, 751
ScrFI CCNGG 1 cut(s) 419
SduI GDGCHC 3 cut(s) 99, 623, 1040
SetI ASST 8 cut(s) 38, 94, 288, 408, 501, 563, 702, 847
SfaNI GCATC 2 cut(s) 133, 453
SinI GGWCC 2 cut(s) 64, 79
SmiMI CAYNNNNRTG 2 cut(s) 132, 821
SmlI CTYRAG 2 cut(s) 467, 850
SmoI CTYRAG 2 cut(s) 467, 850
Sse9I AATT 6 cut(s) 345, 434, 581, 676, 733, 964
SsiI CCGC 2 cut(s) 482, 691
SspMI CTAG 1 cut(s) 1031
StyD4I CCNGG 1 cut(s) 417
StyI CCWWGG 1 cut(s) 973
TaaI ACNGT 1 cut(s) 1062
TaiI ACGT 1 cut(s) 288
TaqI TCGA 2 cut(s) 205, 517
TaqII GACCGA 1 cut(s) 1059
TasI AATT 6 cut(s) 345, 434, 581, 676, 733, 964
TatI WGTACW 1 cut(s) 268
TauI GCSGC 1 cut(s) 693
TfiI GAWTC 2 cut(s) 207, 938
Tru1I TTAA 4 cut(s) 105, 336, 851, 963
Tru9I TTAA 4 cut(s) 105, 336, 851, 963
TscAI CASTG 2 cut(s) 295, 1065
TseFI GTSAC 3 cut(s) 286, 554, 1071
TseI GCWGC 1 cut(s) 561
Tsp45I GTSAC 3 cut(s) 286, 554, 1071
TspDTI ATGAA 3 cut(s) 416, 740, 805
TspGWI ACGGA 1 cut(s) 712
TspRI CASTG 2 cut(s) 295, 1065
Van91I CCANNNNNTGG 1 cut(s) 73
Vha464I CTTAAG 1 cut(s) 850
VneI GTGCAC 1 cut(s) 1036
VpaK11BI GGWCC 2 cut(s) 64, 79
XapI RAATTY 1 cut(s) 581
XceI RCATGY 2 cut(s) 629, 826
XmiI GTMKAC 1 cut(s) 396
XspI CTAG 1 cut(s) 1031
Zsp2I ATGCAT 1 cut(s) 650
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.