Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0007484

Physical Location & Seq

Genomic Coordinates Reverse (-)

17588746 .. 17589452

Gene Structure 707 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG117100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 555 bp

ATGGAAGGCTATAATCTTCTCATGACTATTTTCACCTACGAAATAAACACTTTTGACAAACCGGACCAGTATGTGGAGGACCCTTCTCAACCTGTGCTCGCCGTTAAGTTTGACTACGCCGAGCATCATAGATATGGCATATACTCCCCACAATATGATACCCCAATCCATCATACTATCAAGAGAGAAGATCCCCATGTAAGTCGATTTACTCTGGCCGAGTTCAAAAGCGACGAAGATGACGAGTGGAAGGAGCGTCTTTATTATGTACTGGACTCATTCAACGTCACTGAGGAAAAGCAAGACGAAATCGTGGATAAGATCATTGAAGTGTTTAACAGAGAAATTGGAACATTGGGTTCGGACAATGATCCAAAGATACTGGCATTGTGTGTAGATATGAAGCTAACGCATTTCCTGGTGTGTCAGCGAGAATTAGTGGCGAGGGAACTGAGAAAGAGGATGCTCAAGAGGGTCAGAGCGGTGAAAGAAGAGGAGGTTGAGGAGGATCAATATCGAGAGAGCAGAAAGAGGCGTAAGATCGATCGTAGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

184

Amino Acids

22.22

Weight (kDa)

5.36

Isoelectric Point (pI)

45.39

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007484)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g07901 FvH4_2g07910
malus_domestica	MD00G1051600.v1.1 MD05G1071800.v1.1 MD10G1083000.v1.1 MD10G1083100.v1.1 MD12G1121000.v1.1
prunus_persica	Prupe.8G106000_v2.0.a1 Prupe.8G106100_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0262371
rosa_laevigata	RLG00000014434 RLG00000014436
rosa_multiflora	Rmu_sc0001544.1_g000008 Rmu_sc0001544.1_g000017
rosa_roxburghii	Rroxscaffold_7G00208000 Rroxscaffold_7G00208010
rosa_rugosa	Rorug05G0596500 Rorug05G0596500
rosa_samantha	Rh6AG117100 Rh6AG117200 Rh6BG111100 Rh6BG111200 Rh6CG108700 Rh6CG108800
rosa_wichuraiana	Rw6G010170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	73
AccBSI	CCGCTC	1 cut(s)	482
AciI	CCGC	1 cut(s)	482
AclWI	GGATC	3 cut(s)	185, 365, 516
AcoI	YGGCCR	1 cut(s)	216
AfaI	GTAC	1 cut(s)	270
AfiI	CCNNNNNNNGG	1 cut(s)	73
AgsI	TTSAA	3 cut(s)	226, 283, 329
AjnI	CCWGG	1 cut(s)	417
AluBI	AGCT	1 cut(s)	406
AluI	AGCT	1 cut(s)	406
Alw21I	GWGCWC	1 cut(s)	99
AlwI	GGATC	3 cut(s)	185, 365, 516
AoxI	GGCC	1 cut(s)	216
AspS9I	GGNCC	2 cut(s)	64, 79
AsuHPI	GGTGA	2 cut(s)	25, 496
AvaII	GGWCC	2 cut(s)	64, 79
Bbv12I	GWGCWC	1 cut(s)	99
BccI	CCATC	1 cut(s)	177
BceAI	ACGGC	1 cut(s)	86
BciT130I	CCWGG	1 cut(s)	419
Bme1390I	CCNGG	1 cut(s)	419
Bme18I	GGWCC	2 cut(s)	64, 79
BmgT120I	GGNCC	2 cut(s)	64, 79
BmiI	GGNNCC	1 cut(s)	81
BmrFI	CCNGG	1 cut(s)	419
BmsI	GCATC	2 cut(s)	133, 453
BpuEI	CTTGAG	1 cut(s)	452
Bsa29I	ATCGAT	1 cut(s)	543
BsaBI	GATNNNNATC	1 cut(s)	513
BsaWI	WCCGGW	1 cut(s)	61
Bsc4I	CCNNNNNNNGG	1 cut(s)	73
Bse1I	ACTGG	3 cut(s)	67, 276, 387
Bse8I	GATNNNNATC	1 cut(s)	513
BseBI	CCWGG	1 cut(s)	419
BseCI	ATCGAT	1 cut(s)	543
BseGI	GGATG	1 cut(s)	468
BseJI	GATNNNNATC	1 cut(s)	513
BseLI	CCNNNNNNNGG	1 cut(s)	73
BseMII	CTCAG	2 cut(s)	282, 443
BseNI	ACTGG	3 cut(s)	67, 276, 387
BseRI	GAGGAG	2 cut(s)	509, 518
Bsh1285I	CGRYCG	1 cut(s)	547
BshFI	GGCC	1 cut(s)	218
BshVI	ATCGAT	1 cut(s)	543
BsiEI	CGRYCG	1 cut(s)	547
BsiHKAI	GWGCWC	1 cut(s)	99
BsiSI	CCGG	1 cut(s)	62
BslI	CCNNNNNNNGG	1 cut(s)	73
BsnI	GGCC	1 cut(s)	218
Bsp1286I	GDGCHC	1 cut(s)	99
Bsp143I	GATC	6 cut(s)	190, 321, 370, 508, 540, 544
BspACI	CCGC	1 cut(s)	482
BspANI	GGCC	1 cut(s)	218
BspCNI	CTCAG	2 cut(s)	283, 444
BspDI	ATCGAT	1 cut(s)	543
BspHI	TCATGA	1 cut(s)	21
BspLI	GGNNCC	1 cut(s)	81
BspPI	GGATC	3 cut(s)	185, 365, 516
BsrBI	CCGCTC	1 cut(s)	482
BsrI	ACTGG	3 cut(s)	67, 276, 387
BssMI	GATC	6 cut(s)	190, 321, 370, 508, 540, 544
Bst2UI	CCWGG	1 cut(s)	419
Bst6I	CTCTTC	1 cut(s)	486
BstC8I	GCNNGC	1 cut(s)	99
BstDEI	CTNAG	2 cut(s)	291, 452
BstF5I	GGATG	1 cut(s)	468
BstKTI	GATC	6 cut(s)	193, 324, 373, 511, 543, 547
BstMBI	GATC	6 cut(s)	190, 321, 370, 508, 540, 544
BstMCI	CGRYCG	1 cut(s)	547
BstNI	CCWGG	1 cut(s)	419
BstSCI	CCNGG	1 cut(s)	417
BstX2I	RGATCY	1 cut(s)	190
BstYI	RGATCY	1 cut(s)	190
Bsu15I	ATCGAT	1 cut(s)	543
BsuRI	GGCC	1 cut(s)	218
BsuTUI	ATCGAT	1 cut(s)	543
BtsCI	GGATG	1 cut(s)	468
BtsIMutI	CAGTG	1 cut(s)	288
Cac8I	GCNNGC	1 cut(s)	99
CciI	TCATGA	1 cut(s)	21
Cfr13I	GGNCC	2 cut(s)	64, 79
ClaI	ATCGAT	1 cut(s)	543
CseI	GACGC	1 cut(s)	245
Csp6I	GTAC	1 cut(s)	269
CviAII	CATG	2 cut(s)	22, 197
CviJI	RGCY	3 cut(s)	9, 218, 406
CviKI_1	RGCY	3 cut(s)	9, 218, 406
CviQI	GTAC	1 cut(s)	269
DdeI	CTNAG	2 cut(s)	291, 452
DpnI	GATC	6 cut(s)	192, 323, 372, 510, 542, 546
DpnII	GATC	6 cut(s)	190, 321, 370, 508, 540, 544
EaeI	YGGCCR	1 cut(s)	216
Eam1104I	CTCTTC	1 cut(s)	486
EarI	CTCTTC	1 cut(s)	486
Eco47I	GGWCC	2 cut(s)	64, 79
EcoO109I	RGGNCCY	1 cut(s)	79
EcoRII	CCWGG	1 cut(s)	417
FaeI	CATG	2 cut(s)	25, 200
FatI	CATG	2 cut(s)	21, 196
FokI	GGATG	1 cut(s)	475
HaeIII	GGCC	1 cut(s)	218
HapII	CCGG	1 cut(s)	62
HgaI	GACGC	1 cut(s)	245
Hin1II	CATG	2 cut(s)	25, 200
HinfI	GANTC	1 cut(s)	275
HpaII	CCGG	1 cut(s)	62
HphI	GGTGA	2 cut(s)	25, 496
Hpy188I	TCNGA	2 cut(s)	364, 479
Hpy188III	TCNNGA	4 cut(s)	22, 181, 469, 518
Hpy99I	CGWCG	1 cut(s)	236
HpyAV	CCTTC	2 cut(s)	93, 244
HpyCH4IV	ACGT	1 cut(s)	285
HpyF3I	CTNAG	2 cut(s)	291, 452
HpySE526I	ACGT	1 cut(s)	285
Hsp92II	CATG	2 cut(s)	25, 200
Kzo9I	GATC	6 cut(s)	190, 321, 370, 508, 540, 544
LmnI	GCTCC	1 cut(s)	253
LpnPI	CCDG	8 cut(s)	75, 80, 105, 200, 257, 368, 404, 431
LweI	GCATC	2 cut(s)	133, 453
MaeII	ACGT	1 cut(s)	285
MaeIII	GTNAC	1 cut(s)	286
MalI	GATC	6 cut(s)	192, 323, 372, 510, 542, 546
MbiI	CCGCTC	1 cut(s)	482
MboI	GATC	6 cut(s)	190, 321, 370, 508, 540, 544
MboII	GAAGA	4 cut(s)	8, 200, 248, 503
MflI	RGATCY	1 cut(s)	190
MhlI	GDGCHC	1 cut(s)	99
MluCI	AATT	2 cut(s)	345, 434
MlyI	GAGTC	1 cut(s)	269
MseI	TTAA	2 cut(s)	105, 336
MslI	CAYNNNNRTG	2 cut(s)	132, 329
MspI	CCGG	1 cut(s)	62
MspR9I	CCNGG	1 cut(s)	419
MvaI	CCWGG	1 cut(s)	419
NdeII	GATC	6 cut(s)	190, 321, 370, 508, 540, 544
NlaIII	CATG	2 cut(s)	25, 200
NlaIV	GGNNCC	1 cut(s)	81
NmeAIII	GCCGAG	2 cut(s)	145, 244
NmuCI	GTSAC	1 cut(s)	286
PagI	TCATGA	1 cut(s)	21
PcsI	WCGNNNNNNNCGW	1 cut(s)	240
PflMI	CCANNNNNTGG	1 cut(s)	73
Ple19I	CGATCG	1 cut(s)	547
PleI	GAGTC	1 cut(s)	269
PpsI	GAGTC	1 cut(s)	269
PpuMI	RGGWCCY	1 cut(s)	79
Psp5II	RGGWCCY	1 cut(s)	79
Psp6I	CCWGG	1 cut(s)	417
PspGI	CCWGG	1 cut(s)	417
PspN4I	GGNNCC	1 cut(s)	81
PspPI	GGNCC	2 cut(s)	64, 79
PspPPI	RGGWCCY	1 cut(s)	79
PsuI	RGATCY	1 cut(s)	190
PvuI	CGATCG	1 cut(s)	547
RsaI	GTAC	1 cut(s)	270
RsaNI	GTAC	1 cut(s)	269
RseI	CAYNNNNRTG	2 cut(s)	132, 329
SaqAI	TTAA	2 cut(s)	105, 336
Sau3AI	GATC	6 cut(s)	190, 321, 370, 508, 540, 544
Sau96I	GGNCC	2 cut(s)	64, 79
SchI	GAGTC	1 cut(s)	269
ScrFI	CCNGG	1 cut(s)	419
SduI	GDGCHC	1 cut(s)	99
SetI	ASST	6 cut(s)	38, 94, 288, 408, 501, 554
SfaNI	GCATC	2 cut(s)	133, 453
SinI	GGWCC	2 cut(s)	64, 79
SmiMI	CAYNNNNRTG	2 cut(s)	132, 329
SmlI	CTYRAG	1 cut(s)	467
SmoI	CTYRAG	1 cut(s)	467
Sse9I	AATT	2 cut(s)	345, 434
SsiI	CCGC	1 cut(s)	482
StyD4I	CCNGG	1 cut(s)	417
TaiI	ACGT	1 cut(s)	288
TaqI	TCGA	3 cut(s)	205, 517, 543
TasI	AATT	2 cut(s)	345, 434
TatI	WGTACW	1 cut(s)	268
Tru1I	TTAA	2 cut(s)	105, 336
Tru9I	TTAA	2 cut(s)	105, 336
TscAI	CASTG	1 cut(s)	295
TseFI	GTSAC	1 cut(s)	286
Tsp45I	GTSAC	1 cut(s)	286
TspDTI	ATGAA	1 cut(s)	416
TspRI	CASTG	1 cut(s)	295
Van91I	CCANNNNNTGG	1 cut(s)	73
VpaK11BI	GGWCC	2 cut(s)	64, 79

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.