Rmu_sc0001544.1_g000008

finger protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001544.1
OG0007484
Physical Location & Seq
Forward (+)
35051 .. 35818
768 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001544.1_g000008.1.cds

Sequence Viewer

Length: 768 bp
atggaagtaactcactcactcaatcgcttctactttcacgtcactccccttgatgcacaactcaacgaatatcacaaagaaccttcaccggttcaactttttatcaagtttgactactacatcaaacacaaatacttcaatgtctcacaagatcatagaacccgaaccctcattcaccgatcggaagagagaactgaagcggtgcaccaatctgatttgtgccatttagatcagagccacatgaacaacgactcgtataagaactgtctattttacattctgtctgaacttggaatcgacgaaaataatcacaatgcaatagtcaatgatattacagactggggtcgcataattgacaacttagagtacaacaaggatcgaaaaatactgagcttgtgggtttatattgcgagtgagcatataacctttcgctgcgaaaggtgtttgacggaaagagagtcattgataaaaaagaagctaaagagagttagagtggtaaaagataatgagatggaatgtgatgatgataatgcgggagacgatgaggaggactgtgaagaaagaaacagccgatgtgtagttcgcgagagtgagatctgcagtatttgtatggaagagtttgcagtgttagatgatgtcttttgcacgccttgttggcatatgtttcatgacaaatgcatagtacgatggctgggagagaagctccattgccctctttgccgcttccagatgcctattgaacatagagactgcagggggcaaaactag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-RING_2

Protein Analysis

255

Amino Acids

30.58

Weight (kDa)

5.5

Isoelectric Point (pI)

58.34

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 585
AciI CCGC 3 cut(s) 200, 533, 721
AclWI GGATC 1 cut(s) 384
AcuI CTGAAG 1 cut(s) 216
AfaI GTAC 2 cut(s) 368, 684
AgeI ACCGGT 1 cut(s) 88
AgsI TTSAA 3 cut(s) 95, 139, 740
AjiI CACGTC 1 cut(s) 40
AluBI AGCT 3 cut(s) 393, 478, 703
AluI AGCT 3 cut(s) 393, 478, 703
Alw21I GWGCWC 1 cut(s) 207
Alw26I GTCTC 3 cut(s) 148, 531, 741
Alw44I GTGCAC 1 cut(s) 203
AlwI GGATC 1 cut(s) 384
ApaLI GTGCAC 1 cut(s) 203
ApeKI GCWGC 1 cut(s) 432
AsiGI ACCGGT 1 cut(s) 88
AsuHPI GGTGA 2 cut(s) 78, 167
BaeGI GKGCMC 1 cut(s) 207
Bbv12I GWGCWC 1 cut(s) 207
BbvI GCAGC 1 cut(s) 419
BccI CCATC 2 cut(s) 505, 681
BcoDI GTCTC 3 cut(s) 148, 531, 741
BfaI CTAG 1 cut(s) 766
BfmI CTRYAG 2 cut(s) 598, 751
BglI GCCNNNNNGGC 1 cut(s) 655
BglII AGATCT 1 cut(s) 594
BisI GCNGC 2 cut(s) 433, 721
BlsI GCNGC 2 cut(s) 434, 722
BmgBI CACGTC 1 cut(s) 40
BmrI ACTGGG 1 cut(s) 349
BmsI GCATC 2 cut(s) 43, 720
BmuI ACTGGG 1 cut(s) 349
BoxI GACNNNNGTC 1 cut(s) 342
BplI GAGNNNNNCTC 2 cut(s) 687, 719
BsaWI WCCGGW 1 cut(s) 88
Bse118I RCCGGY 1 cut(s) 88
Bse1I ACTGG 1 cut(s) 344
Bse3DI GCAATG 1 cut(s) 706
BseMI GCAATG 1 cut(s) 706
BseMII CTCAG 1 cut(s) 380
BseNI ACTGG 1 cut(s) 344
BseRI GAGGAG 1 cut(s) 560
BseSI GKGCMC 1 cut(s) 207
BseXI GCAGC 1 cut(s) 419
BseYI CCCAGC 1 cut(s) 691
Bsh1236I CGCG 1 cut(s) 585
Bsh1285I CGRYCG 1 cut(s) 182
BshTI ACCGGT 1 cut(s) 88
BsiEI CGRYCG 1 cut(s) 182
BsiHKAI GWGCWC 1 cut(s) 207
BsiSI CCGG 1 cut(s) 89
BsmAI GTCTC 3 cut(s) 148, 531, 741
BsmBI CGTCTC 1 cut(s) 531
Bsp1286I GDGCHC 1 cut(s) 207
Bsp143I GATC 5 cut(s) 151, 179, 229, 376, 594
Bsp68I TCGCGA 1 cut(s) 585
BspACI CCGC 3 cut(s) 200, 533, 721
BspCNI CTCAG 1 cut(s) 381
BspFNI CGCG 1 cut(s) 585
BspHI TCATGA 1 cut(s) 667
BspMAI CTGCAG 2 cut(s) 602, 755
BspPI GGATC 1 cut(s) 384
BsrDI GCAATG 1 cut(s) 706
BsrFI RCCGGY 1 cut(s) 88
BsrI ACTGG 1 cut(s) 344
BssAI RCCGGY 1 cut(s) 88
BssMI GATC 5 cut(s) 151, 179, 229, 376, 594
Bst4CI ACNGT 2 cut(s) 266, 554
Bst6I CTCTTC 2 cut(s) 180, 609
BstC8I GCNNGC 1 cut(s) 647
BstDEI CTNAG 2 cut(s) 361, 389
BstFNI CGCG 1 cut(s) 585
BstKTI GATC 5 cut(s) 154, 182, 232, 379, 597
BstMAI GTCTC 3 cut(s) 148, 531, 741
BstMBI GATC 5 cut(s) 151, 179, 229, 376, 594
BstMCI CGRYCG 1 cut(s) 182
BstMWI GCNNNNNNNGC 2 cut(s) 655, 717
BstPAI GACNNNNGTC 1 cut(s) 342
BstSFI CTRYAG 2 cut(s) 598, 751
BstSLI GKGCMC 1 cut(s) 207
BstUI CGCG 1 cut(s) 585
BstV1I GCAGC 1 cut(s) 419
BstX2I RGATCY 1 cut(s) 594
BstYI RGATCY 1 cut(s) 594
BtrI CACGTC 1 cut(s) 40
BtsI GCAGTG 1 cut(s) 630
BtsIMutI CAGTG 1 cut(s) 630
BtuMI TCGCGA 1 cut(s) 585
Cac8I GCNNGC 1 cut(s) 647
CciI TCATGA 1 cut(s) 667
Cfr10I RCCGGY 1 cut(s) 88
Csp6I GTAC 2 cut(s) 367, 683
CspAI ACCGGT 1 cut(s) 88
CviAII CATG 2 cut(s) 241, 668
CviJI RGCY 6 cut(s) 237, 393, 478, 570, 691, 703
CviKI_1 RGCY 6 cut(s) 237, 393, 478, 570, 691, 703
CviQI GTAC 2 cut(s) 367, 683
DdeI CTNAG 2 cut(s) 361, 389
DpnI GATC 5 cut(s) 153, 181, 231, 378, 596
DpnII GATC 5 cut(s) 151, 179, 229, 376, 594
Eam1104I CTCTTC 2 cut(s) 180, 609
EarI CTCTTC 2 cut(s) 180, 609
Eco57I CTGAAG 1 cut(s) 216
EcoT22I ATGCAT 1 cut(s) 680
Esp3I CGTCTC 1 cut(s) 531
FaeI CATG 2 cut(s) 244, 671
FatI CATG 2 cut(s) 240, 667
FauI CCCGC 1 cut(s) 526
FauNDI CATATG 1 cut(s) 660
Fnu4HI GCNGC 2 cut(s) 433, 721
Fsp4HI GCNGC 2 cut(s) 433, 721
FspBI CTAG 1 cut(s) 766
GluI GCNGC 2 cut(s) 433, 721
GsaI CCCAGC 1 cut(s) 695
HapII CCGG 1 cut(s) 89
Hin1II CATG 2 cut(s) 244, 671
HinfI GANTC 3 cut(s) 251, 294, 458
HpaII CCGG 1 cut(s) 89
HphI GGTGA 2 cut(s) 78, 167
Hpy166II GTNNAC 1 cut(s) 205
Hpy188I TCNGA 4 cut(s) 184, 214, 234, 286
Hpy188III TCNNGA 3 cut(s) 584, 668, 727
Hpy8I GTNNAC 1 cut(s) 205
Hpy99I CGWCG 1 cut(s) 302
HpyAV CCTTC 1 cut(s) 93
HpyCH4III ACNGT 2 cut(s) 266, 554
HpyCH4IV ACGT 1 cut(s) 39
HpyCH4V TGCA 8 cut(s) 56, 205, 317, 600, 623, 645, 678, 753
HpyF10VI GCNNNNNNNGC 2 cut(s) 655, 717
HpyF3I CTNAG 2 cut(s) 361, 389
HpySE526I ACGT 1 cut(s) 39
Hsp92II CATG 2 cut(s) 244, 671
Kzo9I GATC 5 cut(s) 151, 179, 229, 376, 594
LmnI GCTCC 1 cut(s) 708
LpnPI CCDG 5 cut(s) 102, 325, 677, 739, 740
Lsp1109I GCAGC 1 cut(s) 419
LweI GCATC 2 cut(s) 43, 720
MaeI CTAG 1 cut(s) 766
MaeII ACGT 1 cut(s) 39
MaeIII GTNAC 2 cut(s) 7, 40
MalI GATC 5 cut(s) 153, 181, 231, 378, 596
MboI GATC 5 cut(s) 151, 179, 229, 376, 594
MboII GAAGA 3 cut(s) 197, 569, 626
MflI RGATCY 1 cut(s) 594
MhlI GDGCHC 1 cut(s) 207
MluCI AATT 1 cut(s) 351
MlyI GAGTC 2 cut(s) 245, 467
MnlI CCTC 4 cut(s) 179, 538, 541, 723
Mph1103I ATGCAT 1 cut(s) 680
MspI CCGG 1 cut(s) 89
MvnI CGCG 1 cut(s) 585
MwoI GCNNNNNNNGC 2 cut(s) 655, 717
NdeI CATATG 1 cut(s) 660
NdeII GATC 5 cut(s) 151, 179, 229, 376, 594
NlaIII CATG 2 cut(s) 244, 671
NmuCI GTSAC 1 cut(s) 40
NruI TCGCGA 1 cut(s) 585
NsiI ATGCAT 1 cut(s) 680
PagI TCATGA 1 cut(s) 667
PfeI GAWTC 1 cut(s) 294
PinAI ACCGGT 1 cut(s) 88
PkrI GCNGC 2 cut(s) 434, 722
Ple19I CGATCG 1 cut(s) 182
PleI GAGTC 2 cut(s) 245, 466
PpsI GAGTC 2 cut(s) 245, 466
PshAI GACNNNNGTC 1 cut(s) 342
PspFI CCCAGC 1 cut(s) 691
PstI CTGCAG 2 cut(s) 602, 755
PsuI RGATCY 1 cut(s) 594
PvuI CGATCG 1 cut(s) 182
RruI TCGCGA 1 cut(s) 585
RsaI GTAC 2 cut(s) 368, 684
RsaNI GTAC 2 cut(s) 367, 683
SatI GCNGC 2 cut(s) 433, 721
Sau3AI GATC 5 cut(s) 151, 179, 229, 376, 594
SchI GAGTC 2 cut(s) 245, 467
SduI GDGCHC 1 cut(s) 207
SetI ASST 7 cut(s) 42, 85, 395, 428, 443, 480, 705
SfaNI GCATC 2 cut(s) 43, 720
SfcI CTRYAG 2 cut(s) 598, 751
Sse9I AATT 1 cut(s) 351
SsiI CCGC 3 cut(s) 200, 533, 721
SspMI CTAG 1 cut(s) 766
TaaI ACNGT 2 cut(s) 266, 554
TaiI ACGT 1 cut(s) 42
TaqI TCGA 2 cut(s) 297, 379
TasI AATT 1 cut(s) 351
TatI WGTACW 1 cut(s) 366
TauI GCSGC 1 cut(s) 723
TfiI GAWTC 1 cut(s) 294
TscAI CASTG 1 cut(s) 630
TseFI GTSAC 1 cut(s) 40
TseI GCWGC 1 cut(s) 432
Tsp45I GTSAC 1 cut(s) 40
TspDTI ATGAA 2 cut(s) 257, 656
TspGWI ACGGA 1 cut(s) 464
TspRI CASTG 1 cut(s) 630
VneI GTGCAC 1 cut(s) 203
XspI CTAG 1 cut(s) 766
Zsp2I ATGCAT 1 cut(s) 680
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.