FvH4_2g08260
BZIP Family

G-box-binding factor 1-like isoform X1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0003937
Physical Location & Seq
Forward (+)
7185015 .. 7189086
4072 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g08260.t2

Sequence Viewer

Length: 927 bp
ATGGAGATTAAGGAAATCAATAATGCTTCAACTCAGGTTGTGGCATTAGAAATTCAAGGTAAGGAAGAAGGTATTCTCTATGACAAAGACTTGGAACCAATGCCACCAATGCCACAAAGTAAGGAAGGCTCAGTAGACATTGATTTGGTAGGCAATAGAGTTGCAGAGAGCGAGAAAGAGACTTCTTTTTCTGGAAATAGTGGTGTTTCACAGAGTGCTGCAGGCAGAGGCGAGGATTCATCAGATGAGAATGCTGACACTAATCAAGATTTTTCTGTGCTTCAAAAGCAAATGTTTAACCAGATTGATCAAGAGACAGCAGTTCAGAACAATTCTAGAGTCCTTTATAGTGGCACAAATACAGATTTAAATTTGTTGAATATTGGGGTACACATGCCTGAAACCCATCTGCATTTGGGAATGGACCTGAATGTATCCAGTGTTCATGCCATACGCACAGAGGAAGATCACGACCGGAGAAGAAGAGAAAAGAGAAAGCAATCCAATAGGGAGTCAGCTAAGAGGTCAAGGTTCCGTAGGCAGCAAGAATGTGAGAAACTTCGAGAAACTGCAGAGATGCTGAATAGCGAAATTTCAGAGCTCCCAAATGAGTTAAGAAGGCTTTCTGAGGAGTGTGGGAAACTTGATGAAAAAAACAGTTCCCTAATTGATGAGATGGAGAAGATGTATGGTCCAGATGCAGTTGCTGATCTCAGAGCTGTGAAAGTTAACTCTTCAGATGATGGAAGCAACAGCATCGAATCAAAACCTCCAAGAAGAGACTACTCAACTTCTCCTACTCCTTCTCATCGAAACGAGATTTTACCTACTCCTTCTCATCGAATAGAGGCTTCTCCTACTCCTCTTGAGCCTCGGTTATTTGGTGTCACCCTACGACCTAACTCTGCTGATTGTTTACGTAATTGA

Protein Analysis

309

Amino Acids

34.59

Weight (kDa)

5.05

Isoelectric Point (pI)

71.25

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
bZIP_1 PF00170 159 - 219 3.9e-12 bZIP transcription factor
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 135
AcsI RAATTY 3 cut(s) 51, 370, 591
AcuI CTGAAG 1 cut(s) 720
AdeI CACNNNGTG 1 cut(s) 215
AfaI GTAC 1 cut(s) 390
AgsI TTSAA 4 cut(s) 30, 56, 284, 379
AluBI AGCT 3 cut(s) 518, 601, 719
AluI AGCT 3 cut(s) 518, 601, 719
Alw21I GWGCWC 1 cut(s) 603
Alw26I GTCTC 3 cut(s) 173, 308, 774
AlwNI CAGNNNCTG 1 cut(s) 707
ApeKI GCWGC 2 cut(s) 218, 541
ApoI RAATTY 3 cut(s) 51, 370, 591
Asp700I GAANNNNTTC 2 cut(s) 72, 622
AspS9I GGNCC 2 cut(s) 424, 692
AsuHPI GGTGA 1 cut(s) 880
AvaII GGWCC 2 cut(s) 424, 692
BanII GRGCYC 1 cut(s) 603
Bbv12I GWGCWC 1 cut(s) 603
BbvI GCAGC 2 cut(s) 205, 553
BccI CCATC 3 cut(s) 414, 670, 737
BcgI CGANNNNNNTGC 2 cut(s) 739, 773
BciVI GTATCC 1 cut(s) 445
BclI TGATCA 1 cut(s) 307
BcoDI GTCTC 3 cut(s) 173, 308, 774
BfaI CTAG 1 cut(s) 336
BfmI CTRYAG 2 cut(s) 219, 570
BfuI GTATCC 1 cut(s) 445
BisI GCNGC 2 cut(s) 219, 542
BlsI GCNGC 2 cut(s) 220, 543
Bme18I GGWCC 2 cut(s) 424, 692
BmgT120I GGNCC 2 cut(s) 424, 692
BmiI GGNNCC 2 cut(s) 96, 533
BmsI GCATC 3 cut(s) 567, 688, 765
BpuEI CTTGAG 1 cut(s) 887
BsaAI YACGTR 1 cut(s) 920
BsaJI CCNNGG 1 cut(s) 872
BsaWI WCCGGW 1 cut(s) 474
BsaXI ACNNNNNCTCC 2 cut(s) 671, 701
Bse1I ACTGG 1 cut(s) 438
BseDI CCNNGG 1 cut(s) 872
BseMII CTCAG 4 cut(s) 47, 144, 618, 727
BseNI ACTGG 1 cut(s) 438
BseRI GAGGAG 2 cut(s) 644, 852
BseXI GCAGC 2 cut(s) 205, 553
Bsh1285I CGRYCG 1 cut(s) 475
BsiEI CGRYCG 1 cut(s) 475
BsiHKAI GWGCWC 1 cut(s) 603
BsiSI CCGG 1 cut(s) 475
BsmAI GTCTC 3 cut(s) 173, 308, 774
BsmI GAATGC 1 cut(s) 256
Bsp1286I GDGCHC 1 cut(s) 603
Bsp143I GATC 3 cut(s) 307, 466, 709
BspCNI CTCAG 4 cut(s) 46, 143, 619, 726
BspLI GGNNCC 2 cut(s) 96, 533
BspMAI CTGCAG 2 cut(s) 223, 574
BsrI ACTGG 1 cut(s) 438
BssECI CCNNGG 1 cut(s) 872
BssMI GATC 3 cut(s) 307, 466, 709
Bst4CI ACNGT 1 cut(s) 659
Bst6I CTCTTC 3 cut(s) 478, 739, 772
BstBAI YACGTR 1 cut(s) 920
BstC8I GCNNGC 1 cut(s) 223
BstDEI CTNAG 5 cut(s) 33, 130, 519, 627, 713
BstKTI GATC 3 cut(s) 310, 469, 712
BstMAI GTCTC 3 cut(s) 173, 308, 774
BstMBI GATC 3 cut(s) 307, 466, 709
BstMCI CGRYCG 1 cut(s) 475
BstMWI GCNNNNNNNGC 2 cut(s) 109, 286
BstNSI RCATGY 1 cut(s) 397
BstSFI CTRYAG 2 cut(s) 219, 570
BstSNI TACGTA 1 cut(s) 920
BstV1I GCAGC 2 cut(s) 205, 553
BsuI GTATCC 1 cut(s) 445
BtsIMutI CAGTG 1 cut(s) 445
Cac8I GCNNGC 1 cut(s) 223
CaiI CAGNNNCTG 1 cut(s) 707
Cfr13I GGNCC 2 cut(s) 424, 692
Csp6I GTAC 1 cut(s) 389
CviAII CATG 2 cut(s) 394, 446
CviJI RGCY 7 cut(s) 129, 518, 601, 622, 719, 851, 871
CviKI_1 RGCY 7 cut(s) 129, 518, 601, 622, 719, 851, 871
CviQI GTAC 1 cut(s) 389
DdeI CTNAG 5 cut(s) 33, 130, 519, 627, 713
DpnI GATC 3 cut(s) 309, 468, 711
DpnII GATC 3 cut(s) 307, 466, 709
DraI TTTAAA 1 cut(s) 369
DraIII CACNNNGTG 1 cut(s) 215
Eam1104I CTCTTC 3 cut(s) 478, 739, 772
EarI CTCTTC 3 cut(s) 478, 739, 772
Ecl136II GAGCTC 1 cut(s) 601
Eco105I TACGTA 1 cut(s) 920
Eco24I GRGCYC 1 cut(s) 603
Eco47I GGWCC 2 cut(s) 424, 692
Eco53kI GAGCTC 1 cut(s) 601
Eco57I CTGAAG 1 cut(s) 720
EcoICRI GAGCTC 1 cut(s) 601
EcoT38I GRGCYC 1 cut(s) 603
FaeI CATG 2 cut(s) 397, 449
FaiI YATR 6 cut(s) 81, 348, 395, 447, 452, 690
FatI CATG 2 cut(s) 393, 445
FbaI TGATCA 1 cut(s) 307
FblI GTMKAC 1 cut(s) 135
Fnu4HI GCNGC 2 cut(s) 219, 542
FriOI GRGCYC 1 cut(s) 603
Fsp4HI GCNGC 2 cut(s) 219, 542
FspBI CTAG 1 cut(s) 336
GluI GCNGC 2 cut(s) 219, 542
HapII CCGG 1 cut(s) 475
Hin1II CATG 2 cut(s) 397, 449
HincII GTYRAC 1 cut(s) 730
HindII GTYRAC 1 cut(s) 730
HinfI GANTC 4 cut(s) 236, 339, 512, 761
HpaI GTTAAC 1 cut(s) 730
HpaII CCGG 1 cut(s) 475
HphI GGTGA 1 cut(s) 880
Hpy166II GTNNAC 4 cut(s) 136, 391, 730, 917
Hpy188I TCNGA 6 cut(s) 244, 327, 598, 628, 716, 739
Hpy188III TCNNGA 8 cut(s) 192, 266, 311, 336, 470, 563, 695, 866
Hpy8I GTNNAC 4 cut(s) 136, 391, 730, 917
HpyAV CCTTC 5 cut(s) 62, 119, 612, 813, 843
HpyCH4III ACNGT 1 cut(s) 659
HpyCH4IV ACGT 1 cut(s) 919
HpyCH4V TGCA 5 cut(s) 164, 221, 412, 572, 701
HpyF10VI GCNNNNNNNGC 2 cut(s) 109, 286
HpyF3I CTNAG 5 cut(s) 33, 130, 519, 627, 713
HpySE526I ACGT 1 cut(s) 919
Hsp92II CATG 2 cut(s) 397, 449
Ksp22I TGATCA 1 cut(s) 307
KspAI GTTAAC 1 cut(s) 730
Kzo9I GATC 3 cut(s) 307, 466, 709
LmnI GCTCC 1 cut(s) 606
LpnPI CCDG 9 cut(s) 20, 177, 207, 314, 411, 440, 451, 488, 708
Lsp1109I GCAGC 2 cut(s) 205, 553
LweI GCATC 3 cut(s) 567, 688, 765
MaeI CTAG 1 cut(s) 336
MaeII ACGT 1 cut(s) 919
MaeIII GTNAC 1 cut(s) 886
MalI GATC 3 cut(s) 309, 468, 711
MboI GATC 3 cut(s) 307, 466, 709
MboII GAAGA 7 cut(s) 77, 476, 492, 495, 694, 726, 789
MhlI GDGCHC 1 cut(s) 603
MluCI AATT 6 cut(s) 51, 331, 370, 591, 666, 922
MlyI GAGTC 2 cut(s) 348, 521
MnlI CCTC 9 cut(s) 221, 226, 454, 516, 622, 780, 841, 873, 882
MroXI GAANNNNTTC 2 cut(s) 72, 622
MseI TTAA 5 cut(s) 9, 297, 368, 614, 729
MspI CCGG 1 cut(s) 475
Mva1269I GAATGC 1 cut(s) 256
MwoI GCNNNNNNNGC 2 cut(s) 109, 286
NdeII GATC 3 cut(s) 307, 466, 709
NlaIII CATG 2 cut(s) 397, 449
NlaIV GGNNCC 2 cut(s) 96, 533
NmuCI GTSAC 1 cut(s) 886
NspI RCATGY 1 cut(s) 397
PctI GAATGC 1 cut(s) 256
PdmI GAANNNNTTC 2 cut(s) 72, 622
PfeI GAWTC 2 cut(s) 236, 761
PkrI GCNGC 2 cut(s) 220, 543
PleI GAGTC 2 cut(s) 347, 520
PpsI GAGTC 2 cut(s) 347, 520
Ppu21I YACGTR 1 cut(s) 920
Psp124BI GAGCTC 1 cut(s) 603
PspN4I GGNNCC 2 cut(s) 96, 533
PspPI GGNCC 2 cut(s) 424, 692
PsrI GAACNNNNNNTAC 2 cut(s) 426, 458
PstI CTGCAG 2 cut(s) 223, 574
PstNI CAGNNNCTG 1 cut(s) 707
RsaI GTAC 1 cut(s) 390
RsaNI GTAC 1 cut(s) 389
SacI GAGCTC 1 cut(s) 603
SaqAI TTAA 5 cut(s) 9, 297, 368, 614, 729
SatI GCNGC 2 cut(s) 219, 542
Sau3AI GATC 3 cut(s) 307, 466, 709
Sau96I GGNCC 2 cut(s) 424, 692
SchI GAGTC 2 cut(s) 348, 521
SduI GDGCHC 1 cut(s) 603
SfaNI GCATC 3 cut(s) 567, 688, 765
SfcI CTRYAG 2 cut(s) 219, 570
SinI GGWCC 2 cut(s) 424, 692
SmiI ATTTAAAT 1 cut(s) 369
SmlI CTYRAG 1 cut(s) 866
SmoI CTYRAG 1 cut(s) 866
SnaBI TACGTA 1 cut(s) 920
Sse9I AATT 6 cut(s) 51, 331, 370, 591, 666, 922
SspI AATATT 1 cut(s) 382
SspMI CTAG 1 cut(s) 336
SstI GAGCTC 1 cut(s) 603
SwaI ATTTAAAT 1 cut(s) 369
TaaI ACNGT 1 cut(s) 659
TaiI ACGT 1 cut(s) 922
TaqI TCGA 4 cut(s) 562, 759, 811, 841
TasI AATT 6 cut(s) 51, 331, 370, 591, 666, 922
TfiI GAWTC 2 cut(s) 236, 761
Tru1I TTAA 5 cut(s) 9, 297, 368, 614, 729
Tru9I TTAA 5 cut(s) 9, 297, 368, 614, 729
TscAI CASTG 1 cut(s) 445
TseFI GTSAC 1 cut(s) 886
TseI GCWGC 2 cut(s) 218, 541
Tsp45I GTSAC 1 cut(s) 886
TspDTI ATGAA 3 cut(s) 228, 434, 663
TspGWI ACGGA 1 cut(s) 524
TspRI CASTG 1 cut(s) 445
VpaK11BI GGWCC 2 cut(s) 424, 692
XapI RAATTY 3 cut(s) 51, 370, 591
XbaI TCTAGA 1 cut(s) 335
XceI RCATGY 1 cut(s) 397
XmiI GTMKAC 1 cut(s) 135
XmnI GAANNNNTTC 2 cut(s) 72, 622
XspI CTAG 1 cut(s) 336
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.