Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0003937

Physical Location & Seq

Genomic Coordinates Forward (+)

13319958 .. 13324184

Gene Structure 4227 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG116100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 897 bp

ATGGAGACTAAGGAAACCAGTGCTGCTTCAACTCAGGGTGTGGCATTAGAAATTCAAGATAAAGAAGAAAGGGTTCTCAATGAGAAGGACATGGAATCAATGACGCCAATGACAACAACTAAGGAAGGCTCAGTAGACATTGAGGTGGTAGGCAATAGAGTTGCAGATAGCGAAAAGGAAACTTCTTTTTCTGGAAATAGTGGTGACGGTGTTTCACAGGGTGCTGCAGGCAGAGGCGAGGATTCATCAGATGAGAATGCTGACACTAACCGAGATTTCTCTGCAATTCAAAAGCAAATTTTTAACCAGATGGGGGCAGTTCAGAATAATTCTAGAGTCCTTTATAGTGGCATGGATACAAATTTGAAATTGTTGAATATTGGGGTAAACATGCCTGAAACCCATCCGAATTCGGGACTGGACCTGAATGTATCCAGTGCTCATGCCATTTGCACAGAGGAAGATCACGACTGGAGAAGAAGAGAAAAGAGAAAGCAGTCTAATAGGGAGTCAGCTAAGAGGTCAAGATTCCGTAGGCAGCAAGAATGTGAGAAACTACGAGAAACTGCAGCGATGCTGAATAGTGAAATCTCGGAGCTCCCAAATGAGTTAAGAAGGCTTTCTGAGGAGTGTGGGAAACTTGATGAAGAAAACAGTTCCCTAATTGATGAGATGGAGAAGATGTATGGTCCAGATGCAGTTGCTGATCTCAGAGCTGTGAAAGTCAACTCTTCCGATGATGGAAGCAACAGCATCGAATCAAAAACTCCAAGCAGAGACAACTCAACTTCTCCTACTCATCAAAAAGAGACTTCTCCTACTCCTGAGCCTCGATTATTTGGTGTCAGCCTACGACCAAACTTGGCTGATTGTTTACATAGTTCAAAGGTCCAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MFMR MFMR_assoc bZIP_1

Protein Analysis

298

Amino Acids

32.97

Weight (kDa)

4.89

Isoelectric Point (pI)

57.59

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
bZIP_1	PF00170	160 - 218	8.4e-12	bZIP transcription factor

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003937)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g08260 FvH4_2g08260 FvH4_2g08260 FvH4_2g08260
malus_domestica	MD10G1080800.v1.1
prunus_persica	Prupe.8G102100_v2.0.a1 Prupe.8G102100_v2.0.a1 Prupe.8G102100_v2.0.a1 Prupe.8G102100_v2.0.a1 Prupe.8G102100_v2.0.a1 Prupe.8G102100_v2.0.a1 Prupe.8G102100_v2.0.a1 Prupe.8G102100_v2.0.a1 Prupe.8G102100_v2.0.a1 Prupe.8G102100_v2.0.a1 Prupe.8G102100_v2.0.a1 Prupe.8G102100_v2.0.a1 Prupe.8G102100_v2.0.a1 Prupe.8G102100_v2.0.a1 Prupe.8G102100_v2.0.a1 Prupe.8G102100_v2.0.a1
pyrus_communis	pycom10g06400
rosa_chinensis	RchiOBHm_Chr6g0263141
rosa_laevigata	RLG00000014369
rosa_multiflora	Rmu_sc0015149.1_g000003 Rmu_sc0039118.1_g000001
rosa_roxburghii	Rroxscaffold_176G00430940 Rroxscaffold_7G00204630
rosa_rugosa	Rorug06G0003800
rosa_samantha	Rh6AG122900 Rh6BG117900 Rh6CG116100 Rh6DG104600
rosa_wichuraiana	Rw6G010560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	135
AcsI	RAATTY	4 cut(s)	51, 297, 361, 409
AcyI	GRCGYC	1 cut(s)	104
AdeI	CACNNNGTG	1 cut(s)	221
AfiI	CCNNNNNNNGG	2 cut(s)	313, 413
AgsI	TTSAA	6 cut(s)	30, 56, 290, 367, 376, 885
AluBI	AGCT	3 cut(s)	515, 598, 716
AluI	AGCT	3 cut(s)	515, 598, 716
Alw21I	GWGCWC	2 cut(s)	442, 600
Alw26I	GTCTC	2 cut(s)	771, 803
AlwNI	CAGNNNCTG	1 cut(s)	704
ApeKI	GCWGC	4 cut(s)	23, 224, 538, 569
ApoI	RAATTY	4 cut(s)	51, 297, 361, 409
Asp700I	GAANNNNTTC	2 cut(s)	72, 619
AspS9I	GGNCC	3 cut(s)	421, 689, 889
AsuHPI	GGTGA	1 cut(s)	215
AvaII	GGWCC	3 cut(s)	421, 689, 889
BanII	GRGCYC	1 cut(s)	600
Bbv12I	GWGCWC	2 cut(s)	442, 600
BbvI	GCAGC	4 cut(s)	10, 211, 550, 581
BccI	CCATC	4 cut(s)	304, 411, 667, 734
BcgI	CGANNNNNNTGC	2 cut(s)	736, 770
BciVI	GTATCC	2 cut(s)	349, 442
BcoDI	GTCTC	2 cut(s)	771, 803
BfaI	CTAG	1 cut(s)	333
BfmI	CTRYAG	2 cut(s)	225, 567
BfuI	GTATCC	2 cut(s)	349, 442
BisI	GCNGC	4 cut(s)	24, 225, 539, 570
BlsI	GCNGC	4 cut(s)	25, 226, 540, 571
Bme18I	GGWCC	3 cut(s)	421, 689, 889
BmgT120I	GGNCC	3 cut(s)	421, 689, 889
BmsI	GCATC	3 cut(s)	564, 685, 762
BpmI	CTGGAG	1 cut(s)	493
Bpu10I	CCTNAGC	1 cut(s)	825
BsaHI	GRCGYC	1 cut(s)	104
BsaXI	ACNNNNNCTCC	2 cut(s)	668, 698
Bsc4I	CCNNNNNNNGG	2 cut(s)	313, 413
Bse1I	ACTGG	5 cut(s)	18, 423, 435, 476, 892
BseGI	GGATG	1 cut(s)	403
BseLI	CCNNNNNNNGG	2 cut(s)	313, 413
BseMII	CTCAG	5 cut(s)	47, 144, 615, 724, 816
BseNI	ACTGG	5 cut(s)	18, 423, 435, 476, 892
BseRI	GAGGAG	1 cut(s)	641
BseXI	GCAGC	4 cut(s)	10, 211, 550, 581
BsiHKAI	GWGCWC	2 cut(s)	442, 600
BslFI	GGGAC	1 cut(s)	429
BslI	CCNNNNNNNGG	2 cut(s)	313, 413
BsmAI	GTCTC	2 cut(s)	771, 803
BsmFI	GGGAC	1 cut(s)	429
BsmI	GAATGC	1 cut(s)	262
Bsp1286I	GDGCHC	2 cut(s)	442, 600
Bsp143I	GATC	2 cut(s)	463, 706
BspCNI	CTCAG	5 cut(s)	46, 143, 616, 723, 817
BspMAI	CTGCAG	2 cut(s)	229, 571
BsrI	ACTGG	5 cut(s)	18, 423, 435, 476, 892
BssMI	GATC	2 cut(s)	463, 706
BssNI	GRCGYC	1 cut(s)	104
Bst4CI	ACNGT	2 cut(s)	209, 656
Bst6I	CTCTTC	2 cut(s)	475, 736
BstACI	GRCGYC	1 cut(s)	104
BstC8I	GCNNGC	1 cut(s)	229
BstDEI	CTNAG	8 cut(s)	9, 33, 120, 130, 516, 624, 710, 825
BstF5I	GGATG	1 cut(s)	403
BstKTI	GATC	2 cut(s)	466, 709
BstMAI	GTCTC	2 cut(s)	771, 803
BstMBI	GATC	2 cut(s)	463, 706
BstNSI	RCATGY	1 cut(s)	394
BstSFI	CTRYAG	2 cut(s)	225, 567
BstV1I	GCAGC	4 cut(s)	10, 211, 550, 581
BsuI	GTATCC	2 cut(s)	349, 442
BtgZI	GCGATG	1 cut(s)	587
BtsCI	GGATG	1 cut(s)	403
BtsIMutI	CAGTG	2 cut(s)	25, 442
Cac8I	GCNNGC	1 cut(s)	229
CaiI	CAGNNNCTG	1 cut(s)	704
Cfr13I	GGNCC	3 cut(s)	421, 689, 889
CseI	GACGC	1 cut(s)	112
CviAII	CATG	4 cut(s)	91, 352, 391, 443
CviJI	RGCY	8 cut(s)	129, 515, 598, 619, 716, 829, 849, 866
CviKI_1	RGCY	8 cut(s)	129, 515, 598, 619, 716, 829, 849, 866
DdeI	CTNAG	8 cut(s)	9, 33, 120, 130, 516, 624, 710, 825
DpnI	GATC	2 cut(s)	465, 708
DpnII	GATC	2 cut(s)	463, 706
DraIII	CACNNNGTG	1 cut(s)	221
Eam1104I	CTCTTC	2 cut(s)	475, 736
EarI	CTCTTC	2 cut(s)	475, 736
Ecl136II	GAGCTC	1 cut(s)	598
Eco24I	GRGCYC	1 cut(s)	600
Eco47I	GGWCC	3 cut(s)	421, 689, 889
Eco53kI	GAGCTC	1 cut(s)	598
EcoICRI	GAGCTC	1 cut(s)	598
EcoRI	GAATTC	1 cut(s)	409
EcoT38I	GRGCYC	1 cut(s)	600
FaeI	CATG	4 cut(s)	94, 355, 394, 446
FaiI	YATR	7 cut(s)	92, 345, 353, 392, 444, 687, 879
FaqI	GGGAC	1 cut(s)	429
FatI	CATG	4 cut(s)	90, 351, 390, 442
FblI	GTMKAC	1 cut(s)	135
Fnu4HI	GCNGC	4 cut(s)	24, 225, 539, 570
FokI	GGATG	1 cut(s)	390
FriOI	GRGCYC	1 cut(s)	600
Fsp4HI	GCNGC	4 cut(s)	24, 225, 539, 570
FspBI	CTAG	1 cut(s)	333
GluI	GCNGC	4 cut(s)	24, 225, 539, 570
GsuI	CTGGAG	1 cut(s)	493
HgaI	GACGC	1 cut(s)	112
Hin1I	GRCGYC	1 cut(s)	104
Hin1II	CATG	4 cut(s)	94, 355, 394, 446
HincII	GTYRAC	1 cut(s)	727
HindII	GTYRAC	1 cut(s)	727
HinfI	GANTC	6 cut(s)	95, 242, 336, 509, 528, 758
HphI	GGTGA	1 cut(s)	215
Hpy166II	GTNNAC	4 cut(s)	136, 388, 727, 875
Hpy188I	TCNGA	7 cut(s)	250, 324, 408, 595, 625, 713, 736
Hpy188III	TCNNGA	8 cut(s)	56, 192, 333, 414, 467, 525, 692, 824
Hpy8I	GTNNAC	4 cut(s)	136, 388, 727, 875
HpyAV	CCTTC	3 cut(s)	79, 119, 609
HpyCH4III	ACNGT	2 cut(s)	209, 656
HpyCH4V	TGCA	6 cut(s)	164, 227, 284, 453, 569, 698
HpyF3I	CTNAG	8 cut(s)	9, 33, 120, 130, 516, 624, 710, 825
Hsp92I	GRCGYC	1 cut(s)	104
Hsp92II	CATG	4 cut(s)	94, 355, 394, 446
Kzo9I	GATC	2 cut(s)	463, 706
LmnI	GCTCC	2 cut(s)	595, 603
Lsp1109I	GCAGC	4 cut(s)	10, 211, 550, 581
LweI	GCATC	3 cut(s)	564, 685, 762
MaeI	CTAG	1 cut(s)	333
MaeIII	GTNAC	1 cut(s)	203
MalI	GATC	2 cut(s)	465, 708
MboI	GATC	2 cut(s)	463, 706
MboII	GAAGA	7 cut(s)	77, 473, 489, 492, 659, 691, 723
MhlI	GDGCHC	2 cut(s)	442, 600
MluCI	AATT	8 cut(s)	51, 285, 297, 328, 361, 368, 409, 663
MlyI	GAGTC	2 cut(s)	345, 518
MnlI	CCTC	7 cut(s)	136, 227, 232, 451, 513, 619, 840
MroXI	GAANNNNTTC	2 cut(s)	72, 619
MseI	TTAA	2 cut(s)	303, 611
MslI	CAYNNNNRTG	1 cut(s)	143
Mva1269I	GAATGC	1 cut(s)	262
NdeII	GATC	2 cut(s)	463, 706
NlaIII	CATG	4 cut(s)	94, 355, 394, 446
NmuCI	GTSAC	1 cut(s)	203
NspI	RCATGY	1 cut(s)	394
PctI	GAATGC	1 cut(s)	262
PdmI	GAANNNNTTC	2 cut(s)	72, 619
PfeI	GAWTC	4 cut(s)	95, 242, 528, 758
PkrI	GCNGC	4 cut(s)	25, 226, 540, 571
PleI	GAGTC	2 cut(s)	344, 517
PpsI	GAGTC	2 cut(s)	344, 517
Psp124BI	GAGCTC	1 cut(s)	600
PspPI	GGNCC	3 cut(s)	421, 689, 889
PstI	CTGCAG	2 cut(s)	229, 571
PstNI	CAGNNNCTG	1 cut(s)	704
RseI	CAYNNNNRTG	1 cut(s)	143
SacI	GAGCTC	1 cut(s)	600
SaqAI	TTAA	2 cut(s)	303, 611
SatI	GCNGC	4 cut(s)	24, 225, 539, 570
Sau3AI	GATC	2 cut(s)	463, 706
Sau96I	GGNCC	3 cut(s)	421, 689, 889
SchI	GAGTC	2 cut(s)	345, 518
SduI	GDGCHC	2 cut(s)	442, 600
SetI	ASST	7 cut(s)	147, 426, 517, 524, 600, 718, 891
SfaNI	GCATC	3 cut(s)	564, 685, 762
SfcI	CTRYAG	2 cut(s)	225, 567
SinI	GGWCC	3 cut(s)	421, 689, 889
SmiMI	CAYNNNNRTG	1 cut(s)	143
Sse9I	AATT	8 cut(s)	51, 285, 297, 328, 361, 368, 409, 663
SspI	AATATT	1 cut(s)	379
SspMI	CTAG	1 cut(s)	333
SstI	GAGCTC	1 cut(s)	600
TaaI	ACNGT	2 cut(s)	209, 656
TaqI	TCGA	2 cut(s)	756, 832
TasI	AATT	8 cut(s)	51, 285, 297, 328, 361, 368, 409, 663
TfiI	GAWTC	4 cut(s)	95, 242, 528, 758
Tru1I	TTAA	2 cut(s)	303, 611
Tru9I	TTAA	2 cut(s)	303, 611
TscAI	CASTG	2 cut(s)	25, 442
TseFI	GTSAC	1 cut(s)	203
TseI	GCWGC	4 cut(s)	23, 224, 538, 569
Tsp45I	GTSAC	1 cut(s)	203
TspDTI	ATGAA	2 cut(s)	234, 660
TspGWI	ACGGA	1 cut(s)	521
TspRI	CASTG	2 cut(s)	25, 442
VpaK11BI	GGWCC	3 cut(s)	421, 689, 889
XapI	RAATTY	4 cut(s)	51, 297, 361, 409
XbaI	TCTAGA	1 cut(s)	332
XceI	RCATGY	1 cut(s)	394
XmiI	GTMKAC	1 cut(s)	135
XmnI	GAANNNNTTC	2 cut(s)	72, 619
XspI	CTAG	1 cut(s)	333

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.