Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0003937

Physical Location & Seq

Genomic Coordinates Reverse (-)

54118364 .. 54121215

Gene Structure 2852 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00204630.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 801 bp

ATGGAACCAATGACGCCAATGACAACAACTAAGGAAGGCTCAGTAGACATTGAGGTGGTAGGCAATAGAGTTGCAGATAGCGAAAAGGAAACTTCTTTTCTGGAAATAGTGGTGACGGTGTTTCACAGGGGCAGAGGCGAGGATTCATCAGATGAGAATGCTGACACTAACCGAGATTTTTCTGCAATTCAAAAGCAAATTTTTAACCAGATGGGGGCAGTTCAGAATAATTCTAGAGTCCTTTATAGTGGCATGGATACAAATTTGAAATTGTTGAATATTGGGGTAAACATGCCTGAAACCCATCCGAATTCGGGACTGGACCTGAATGTATCCAGTGCTCATGCCATACACACAGAGGAAGATCACGACTGGAGAAGAAGAGAAAAGAGAAAGCAGTCTAATAGGGAGTCAGCTAAGAGGTCAAGATTCCGTAGGCAGCAAGAATGTGAGAAACTACGAGAAACTGCAGCGATGCTGAATAGTGAAATCTCGGAGCTCCCAAATGAGTTAAGAAGGCTTTCTGAGGAGTGTGGGAAACTTGATGAAGAAAACAGTTCCCTAATTGATGAGATGGAGAAGATGTACGGTCCAGATGCAGTTGCTGATCTCAGAGCTGTGAAAGTCAACTCTTCCGATGATGGAAGCAACAGCATCGAATCAAAAACTCCAAGCAGAGACAACTCGACTTCTCCTACTCCTCATCAAAAAGAGACTTCTCCTACTCCTGAGCCTCGATTATTTGGTGTCAGCCTACGACCAAACTTGGTTGATTGTTTACATAGTTCAAAGGTCCAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MFMR MFMR_assoc bZIP_1

Protein Analysis

266

Amino Acids

29.92

Weight (kDa)

5.23

Isoelectric Point (pI)

59.35

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
bZIP_1	PF00170	127 - 185	8.6e-12	bZIP transcription factor

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003937)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g08260 FvH4_2g08260 FvH4_2g08260 FvH4_2g08260
malus_domestica	MD10G1080800.v1.1
prunus_persica	Prupe.8G102100_v2.0.a1 Prupe.8G102100_v2.0.a1 Prupe.8G102100_v2.0.a1 Prupe.8G102100_v2.0.a1 Prupe.8G102100_v2.0.a1 Prupe.8G102100_v2.0.a1 Prupe.8G102100_v2.0.a1 Prupe.8G102100_v2.0.a1 Prupe.8G102100_v2.0.a1 Prupe.8G102100_v2.0.a1 Prupe.8G102100_v2.0.a1 Prupe.8G102100_v2.0.a1 Prupe.8G102100_v2.0.a1 Prupe.8G102100_v2.0.a1 Prupe.8G102100_v2.0.a1 Prupe.8G102100_v2.0.a1
pyrus_communis	pycom10g06400
rosa_chinensis	RchiOBHm_Chr6g0263141
rosa_laevigata	RLG00000014369
rosa_multiflora	Rmu_sc0015149.1_g000003 Rmu_sc0039118.1_g000001
rosa_roxburghii	Rroxscaffold_176G00430940 Rroxscaffold_7G00204630
rosa_rugosa	Rorug06G0003800
rosa_samantha	Rh6AG122900 Rh6BG117900 Rh6CG116100 Rh6DG104600
rosa_wichuraiana	Rw6G010560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	45
AcsI	RAATTY	3 cut(s)	198, 262, 310
AcyI	GRCGYC	1 cut(s)	14
AfaI	GTAC	1 cut(s)	587
AfiI	CCNNNNNNNGG	2 cut(s)	214, 314
AgsI	TTSAA	4 cut(s)	191, 268, 277, 789
AluBI	AGCT	3 cut(s)	416, 499, 617
AluI	AGCT	3 cut(s)	416, 499, 617
Alw21I	GWGCWC	2 cut(s)	343, 501
Alw26I	GTCTC	2 cut(s)	672, 707
AlwNI	CAGNNNCTG	1 cut(s)	605
ApeKI	GCWGC	2 cut(s)	439, 470
ApoI	RAATTY	3 cut(s)	198, 262, 310
Asp700I	GAANNNNTTC	1 cut(s)	520
AspS9I	GGNCC	3 cut(s)	322, 590, 793
AsuHPI	GGTGA	1 cut(s)	124
AvaII	GGWCC	3 cut(s)	322, 590, 793
BanII	GRGCYC	1 cut(s)	501
Bbv12I	GWGCWC	2 cut(s)	343, 501
BbvI	GCAGC	2 cut(s)	451, 482
BccI	CCATC	4 cut(s)	205, 312, 568, 635
BcgI	CGANNNNNNTGC	2 cut(s)	637, 671
BciVI	GTATCC	2 cut(s)	250, 343
BcoDI	GTCTC	2 cut(s)	672, 707
BfaI	CTAG	1 cut(s)	234
BfmI	CTRYAG	1 cut(s)	468
BfuI	GTATCC	2 cut(s)	250, 343
BisI	GCNGC	2 cut(s)	440, 471
BlsI	GCNGC	2 cut(s)	441, 472
Bme18I	GGWCC	3 cut(s)	322, 590, 793
BmgT120I	GGNCC	3 cut(s)	322, 590, 793
BmiI	GGNNCC	1 cut(s)	6
BmsI	GCATC	3 cut(s)	465, 586, 663
BpmI	CTGGAG	1 cut(s)	394
Bpu10I	CCTNAGC	1 cut(s)	729
BsaHI	GRCGYC	1 cut(s)	14
BsaXI	ACNNNNNCTCC	2 cut(s)	569, 599
Bsc4I	CCNNNNNNNGG	2 cut(s)	214, 314
Bse1I	ACTGG	4 cut(s)	324, 336, 377, 796
BseGI	GGATG	1 cut(s)	304
BseLI	CCNNNNNNNGG	2 cut(s)	214, 314
BseMII	CTCAG	4 cut(s)	54, 516, 625, 720
BseNI	ACTGG	4 cut(s)	324, 336, 377, 796
BseRI	GAGGAG	2 cut(s)	542, 690
BseXI	GCAGC	2 cut(s)	451, 482
BsiHKAI	GWGCWC	2 cut(s)	343, 501
BslFI	GGGAC	1 cut(s)	330
BslI	CCNNNNNNNGG	2 cut(s)	214, 314
BsmAI	GTCTC	2 cut(s)	672, 707
BsmFI	GGGAC	1 cut(s)	330
BsmI	GAATGC	1 cut(s)	163
Bsp1286I	GDGCHC	2 cut(s)	343, 501
Bsp143I	GATC	2 cut(s)	364, 607
BspCNI	CTCAG	4 cut(s)	53, 517, 624, 721
BspLI	GGNNCC	1 cut(s)	6
BspMAI	CTGCAG	1 cut(s)	472
BsrI	ACTGG	4 cut(s)	324, 336, 377, 796
BssMI	GATC	2 cut(s)	364, 607
BssNI	GRCGYC	1 cut(s)	14
Bst4CI	ACNGT	3 cut(s)	118, 557, 590
Bst6I	CTCTTC	2 cut(s)	376, 637
BstACI	GRCGYC	1 cut(s)	14
BstDEI	CTNAG	6 cut(s)	30, 40, 417, 525, 611, 729
BstF5I	GGATG	1 cut(s)	304
BstKTI	GATC	2 cut(s)	367, 610
BstMAI	GTCTC	2 cut(s)	672, 707
BstMBI	GATC	2 cut(s)	364, 607
BstNSI	RCATGY	1 cut(s)	295
BstSFI	CTRYAG	1 cut(s)	468
BstV1I	GCAGC	2 cut(s)	451, 482
BsuI	GTATCC	2 cut(s)	250, 343
BtgZI	GCGATG	1 cut(s)	488
BtsCI	GGATG	1 cut(s)	304
BtsIMutI	CAGTG	1 cut(s)	343
CaiI	CAGNNNCTG	1 cut(s)	605
Cfr13I	GGNCC	3 cut(s)	322, 590, 793
CseI	GACGC	1 cut(s)	22
Csp6I	GTAC	1 cut(s)	586
CviAII	CATG	3 cut(s)	253, 292, 344
CviJI	RGCY	7 cut(s)	39, 416, 499, 520, 617, 733, 753
CviKI_1	RGCY	7 cut(s)	39, 416, 499, 520, 617, 733, 753
CviQI	GTAC	1 cut(s)	586
DdeI	CTNAG	6 cut(s)	30, 40, 417, 525, 611, 729
DpnI	GATC	2 cut(s)	366, 609
DpnII	GATC	2 cut(s)	364, 607
Eam1104I	CTCTTC	2 cut(s)	376, 637
EarI	CTCTTC	2 cut(s)	376, 637
Ecl136II	GAGCTC	1 cut(s)	499
Eco24I	GRGCYC	1 cut(s)	501
Eco47I	GGWCC	3 cut(s)	322, 590, 793
Eco53kI	GAGCTC	1 cut(s)	499
EcoICRI	GAGCTC	1 cut(s)	499
EcoRI	GAATTC	1 cut(s)	310
EcoT38I	GRGCYC	1 cut(s)	501
FaeI	CATG	3 cut(s)	256, 295, 347
FaiI	YATR	6 cut(s)	246, 254, 293, 345, 350, 783
FaqI	GGGAC	1 cut(s)	330
FatI	CATG	3 cut(s)	252, 291, 343
FblI	GTMKAC	1 cut(s)	45
Fnu4HI	GCNGC	2 cut(s)	440, 471
FokI	GGATG	1 cut(s)	291
FriOI	GRGCYC	1 cut(s)	501
Fsp4HI	GCNGC	2 cut(s)	440, 471
FspBI	CTAG	1 cut(s)	234
GluI	GCNGC	2 cut(s)	440, 471
GsuI	CTGGAG	1 cut(s)	394
HgaI	GACGC	1 cut(s)	22
Hin1I	GRCGYC	1 cut(s)	14
Hin1II	CATG	3 cut(s)	256, 295, 347
HincII	GTYRAC	1 cut(s)	628
HindII	GTYRAC	1 cut(s)	628
HinfI	GANTC	5 cut(s)	143, 237, 410, 429, 659
HphI	GGTGA	1 cut(s)	124
Hpy166II	GTNNAC	4 cut(s)	46, 289, 628, 779
Hpy188I	TCNGA	7 cut(s)	151, 225, 309, 496, 526, 614, 637
Hpy188III	TCNNGA	7 cut(s)	101, 234, 315, 368, 426, 593, 728
Hpy8I	GTNNAC	4 cut(s)	46, 289, 628, 779
HpyAV	CCTTC	2 cut(s)	29, 510
HpyCH4III	ACNGT	3 cut(s)	118, 557, 590
HpyCH4V	TGCA	4 cut(s)	74, 185, 470, 599
HpyF3I	CTNAG	6 cut(s)	30, 40, 417, 525, 611, 729
Hsp92I	GRCGYC	1 cut(s)	14
Hsp92II	CATG	3 cut(s)	256, 295, 347
Kzo9I	GATC	2 cut(s)	364, 607
LmnI	GCTCC	2 cut(s)	496, 504
Lsp1109I	GCAGC	2 cut(s)	451, 482
LweI	GCATC	3 cut(s)	465, 586, 663
MaeI	CTAG	1 cut(s)	234
MaeIII	GTNAC	1 cut(s)	112
MalI	GATC	2 cut(s)	366, 609
MboI	GATC	2 cut(s)	364, 607
MboII	GAAGA	6 cut(s)	374, 390, 393, 560, 592, 624
MhlI	GDGCHC	2 cut(s)	343, 501
MluCI	AATT	7 cut(s)	186, 198, 229, 262, 269, 310, 564
MlyI	GAGTC	2 cut(s)	246, 419
MnlI	CCTC	8 cut(s)	46, 128, 133, 352, 414, 520, 711, 744
MroXI	GAANNNNTTC	1 cut(s)	520
MseI	TTAA	2 cut(s)	204, 512
MslI	CAYNNNNRTG	1 cut(s)	53
Mva1269I	GAATGC	1 cut(s)	163
NdeII	GATC	2 cut(s)	364, 607
NlaIII	CATG	3 cut(s)	256, 295, 347
NlaIV	GGNNCC	1 cut(s)	6
NmuCI	GTSAC	1 cut(s)	112
NspI	RCATGY	1 cut(s)	295
PctI	GAATGC	1 cut(s)	163
PdmI	GAANNNNTTC	1 cut(s)	520
PfeI	GAWTC	3 cut(s)	143, 429, 659
PkrI	GCNGC	2 cut(s)	441, 472
PleI	GAGTC	2 cut(s)	245, 418
PpsI	GAGTC	2 cut(s)	245, 418
Psp124BI	GAGCTC	1 cut(s)	501
PspN4I	GGNNCC	1 cut(s)	6
PspPI	GGNCC	3 cut(s)	322, 590, 793
PstI	CTGCAG	1 cut(s)	472
PstNI	CAGNNNCTG	1 cut(s)	605
RsaI	GTAC	1 cut(s)	587
RsaNI	GTAC	1 cut(s)	586
RseI	CAYNNNNRTG	1 cut(s)	53
SacI	GAGCTC	1 cut(s)	501
SaqAI	TTAA	2 cut(s)	204, 512
SatI	GCNGC	2 cut(s)	440, 471
Sau3AI	GATC	2 cut(s)	364, 607
Sau96I	GGNCC	3 cut(s)	322, 590, 793
SchI	GAGTC	2 cut(s)	246, 419
SduI	GDGCHC	2 cut(s)	343, 501
SetI	ASST	7 cut(s)	57, 327, 418, 425, 501, 619, 795
SfaNI	GCATC	3 cut(s)	465, 586, 663
SfcI	CTRYAG	1 cut(s)	468
SinI	GGWCC	3 cut(s)	322, 590, 793
SmiMI	CAYNNNNRTG	1 cut(s)	53
Sse9I	AATT	7 cut(s)	186, 198, 229, 262, 269, 310, 564
SspI	AATATT	1 cut(s)	280
SspMI	CTAG	1 cut(s)	234
SstI	GAGCTC	1 cut(s)	501
TaaI	ACNGT	3 cut(s)	118, 557, 590
TaqI	TCGA	3 cut(s)	657, 686, 736
TasI	AATT	7 cut(s)	186, 198, 229, 262, 269, 310, 564
TfiI	GAWTC	3 cut(s)	143, 429, 659
Tru1I	TTAA	2 cut(s)	204, 512
Tru9I	TTAA	2 cut(s)	204, 512
TscAI	CASTG	1 cut(s)	343
TseFI	GTSAC	1 cut(s)	112
TseI	GCWGC	2 cut(s)	439, 470
Tsp45I	GTSAC	1 cut(s)	112
TspDTI	ATGAA	2 cut(s)	135, 561
TspGWI	ACGGA	1 cut(s)	422
TspRI	CASTG	1 cut(s)	343
VpaK11BI	GGWCC	3 cut(s)	322, 590, 793
XapI	RAATTY	3 cut(s)	198, 262, 310
XbaI	TCTAGA	1 cut(s)	233
XceI	RCATGY	1 cut(s)	295
XmiI	GTMKAC	1 cut(s)	45
XmnI	GAANNNNTTC	1 cut(s)	520
XspI	CTAG	1 cut(s)	234

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.