Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0003937

Physical Location & Seq

Genomic Coordinates Reverse (-)

591969 .. 595173

Gene Structure 3205 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0003800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 717 bp

ATGGCTGCATATCACTCTGCTCTTAATTCTCAAGTAGACTGCATTGAGATTGATGTTTCTCGTTCTTCAGATGGAGTTCTGCTTGCGCTTCATGACAGGGATTTGCAGCGGATATCTGGAAACAATACTTCTAAGGTTGGACACTTAAGCATGAAAGAGATAAAACATCTCGGTTTGATGCATCAATCTGCAAAGTTCCACGATGCAAATATTCCTACAATTGAAGAGGCTCTTAAGTTGGTATCAAGTTCAGTTAGGCAGGTGGTGTTAGATATAAAAGTCGGGCCTCCATCGTATGAAAAAGGTCTTGCAAGGGATGTTCTTGCTGTTATTGAGAGGATCCAGTGTAGGAATTGCGTTGTATGGGCCAAAAGCGACAATTTAGCAAGGGATGTGATCAGACTATCCTCAGATGTCATGGTGGGGTATATTGTTATGATTGATCAGTCAACCGGGGCTAGGACCAACTTACTGAGGATGAGAGATGCGCGTGTTGTTGGCGTTTACCATCCCTTGATTGATGAAAAGCTTGTGAGAATTCTGCATGGGAGAAATAAGAAGGTATATGCGTGGACTGTTGACGATGCGGAGTCCATGGAAAATATGTTGTTTGAGCACGTCGATGCCATTGTAACAAGCAACCCGAGGATGCTTCAAGCTCTAATGCAAGATACCAGAAGACACTGTCTTGAGCATGGTTTCTCATTATCAGAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MFMR MFMR_assoc bZIP_1

Protein Analysis

238

Amino Acids

26.75

Weight (kDa)

6.83

Isoelectric Point (pI)

33.57

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GDPD	PF03009	1 - 215	6e-22	Glycerophosphoryl diester phosphodiesterase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003937)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g08260 FvH4_2g08260 FvH4_2g08260 FvH4_2g08260
malus_domestica	MD10G1080800.v1.1
prunus_persica	Prupe.8G102100_v2.0.a1 Prupe.8G102100_v2.0.a1 Prupe.8G102100_v2.0.a1 Prupe.8G102100_v2.0.a1 Prupe.8G102100_v2.0.a1 Prupe.8G102100_v2.0.a1 Prupe.8G102100_v2.0.a1 Prupe.8G102100_v2.0.a1 Prupe.8G102100_v2.0.a1 Prupe.8G102100_v2.0.a1 Prupe.8G102100_v2.0.a1 Prupe.8G102100_v2.0.a1 Prupe.8G102100_v2.0.a1 Prupe.8G102100_v2.0.a1 Prupe.8G102100_v2.0.a1 Prupe.8G102100_v2.0.a1
pyrus_communis	pycom10g06400
rosa_chinensis	RchiOBHm_Chr6g0263141
rosa_laevigata	RLG00000014369
rosa_multiflora	Rmu_sc0015149.1_g000003 Rmu_sc0039118.1_g000001
rosa_roxburghii	Rroxscaffold_176G00430940 Rroxscaffold_7G00204630
rosa_rugosa	Rorug06G0003800
rosa_samantha	Rh6AG122900 Rh6BG117900 Rh6CG116100 Rh6DG104600
rosa_wichuraiana	Rw6G010560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	250
Acc36I	ACCTGC	1 cut(s)	250
AccI	GTMKAC	1 cut(s)	36
AccII	CGCG	1 cut(s)	490
AciI	CCGC	2 cut(s)	109, 587
AclWI	GGATC	2 cut(s)	334, 347
AcsI	RAATTY	1 cut(s)	537
AcuI	CTGAAG	1 cut(s)	51
AfiI	CCNNNNNNNGG	1 cut(s)	459
AflII	CTTAAG	2 cut(s)	145, 233
AgsI	TTSAA	2 cut(s)	224, 656
AjiI	CACGTC	1 cut(s)	619
AluBI	AGCT	2 cut(s)	529, 659
AluI	AGCT	2 cut(s)	529, 659
Alw21I	GWGCWC	1 cut(s)	618
AlwI	GGATC	2 cut(s)	334, 347
Ama87I	CYCGRG	1 cut(s)	643
AoxI	GGCC	2 cut(s)	284, 366
ApeKI	GCWGC	2 cut(s)	5, 106
ApoI	RAATTY	1 cut(s)	537
AspLEI	GCGC	2 cut(s)	88, 490
AspS9I	GGNCC	3 cut(s)	284, 366, 462
AsuC2I	CCSGG	1 cut(s)	454
AvaI	CYCGRG	1 cut(s)	643
AvaII	GGWCC	1 cut(s)	462
BamHI	GGATCC	1 cut(s)	339
BbsI	GAAGAC	1 cut(s)	685
Bbv12I	GWGCWC	1 cut(s)	618
BbvI	GCAGC	1 cut(s)	118
BccI	CCATC	3 cut(s)	65, 298, 516
BclI	TGATCA	2 cut(s)	396, 442
BcnI	CCSGG	1 cut(s)	454
BfaI	CTAG	1 cut(s)	459
BfrI	CTTAAG	2 cut(s)	145, 233
BfuAI	ACCTGC	1 cut(s)	250
BisI	GCNGC	2 cut(s)	6, 107
BlsI	GCNGC	2 cut(s)	7, 108
Bme1390I	CCNGG	1 cut(s)	454
Bme18I	GGWCC	1 cut(s)	462
BmeT110I	CYCGRG	1 cut(s)	643
BmgBI	CACGTC	1 cut(s)	619
BmgT120I	GGNCC	3 cut(s)	284, 366, 462
BmiI	GGNNCC	1 cut(s)	341
BmrFI	CCNGG	1 cut(s)	454
BmsI	GCATC	7 cut(s)	168, 190, 193, 475, 574, 613, 639
BpiI	GAAGAC	1 cut(s)	685
BpuEI	CTTGAG	2 cut(s)	15, 710
BpuMI	CCSGG	1 cut(s)	454
BsaJI	CCNNGG	3 cut(s)	453, 594, 644
Bsc4I	CCNNNNNNNGG	1 cut(s)	459
Bse1I	ACTGG	1 cut(s)	343
BseDI	CCNNGG	3 cut(s)	453, 594, 644
BseGI	GGATG	5 cut(s)	322, 397, 483, 508, 654
BseLI	CCNNNNNNNGG	1 cut(s)	459
BseMII	CTCAG	2 cut(s)	423, 464
BseNI	ACTGG	1 cut(s)	343
BseXI	GCAGC	1 cut(s)	118
Bsh1236I	CGCG	1 cut(s)	490
BshFI	GGCC	2 cut(s)	286, 368
BsiHKAI	GWGCWC	1 cut(s)	618
BsiHKCI	CYCGRG	1 cut(s)	643
BsiSI	CCGG	1 cut(s)	453
BslI	CCNNNNNNNGG	1 cut(s)	459
BsnI	GGCC	2 cut(s)	286, 368
BsoBI	CYCGRG	1 cut(s)	643
Bsp1286I	GDGCHC	1 cut(s)	618
Bsp143I	GATC	3 cut(s)	339, 396, 442
Bsp19I	CCATGG	1 cut(s)	594
BspACI	CCGC	2 cut(s)	109, 587
BspANI	GGCC	2 cut(s)	286, 368
BspCNI	CTCAG	2 cut(s)	422, 465
BspFNI	CGCG	1 cut(s)	490
BspHI	TCATGA	1 cut(s)	91
BspLI	GGNNCC	1 cut(s)	341
BspMI	ACCTGC	1 cut(s)	250
BspPI	GGATC	2 cut(s)	334, 347
BspTI	CTTAAG	2 cut(s)	145, 233
BsrI	ACTGG	1 cut(s)	343
BssECI	CCNNGG	3 cut(s)	453, 594, 644
BssMI	GATC	3 cut(s)	339, 396, 442
BssT1I	CCWWGG	1 cut(s)	594
Bst4CI	ACNGT	2 cut(s)	577, 686
Bst6I	CTCTTC	1 cut(s)	219
BstAFI	CTTAAG	2 cut(s)	145, 233
BstC8I	GCNNGC	1 cut(s)	84
BstDEI	CTNAG	3 cut(s)	132, 409, 473
BstDSI	CCRYGG	1 cut(s)	594
BstF5I	GGATG	5 cut(s)	322, 397, 483, 508, 654
BstFNI	CGCG	1 cut(s)	490
BstHHI	GCGC	2 cut(s)	88, 490
BstKTI	GATC	3 cut(s)	342, 399, 445
BstMBI	GATC	3 cut(s)	339, 396, 442
BstSCI	CCNGG	1 cut(s)	452
BstUI	CGCG	1 cut(s)	490
BstV1I	GCAGC	1 cut(s)	118
BstV2I	GAAGAC	1 cut(s)	685
BstX2I	RGATCY	1 cut(s)	339
BstYI	RGATCY	1 cut(s)	339
BsuRI	GGCC	2 cut(s)	286, 368
BtgI	CCRYGG	1 cut(s)	594
BtrI	CACGTC	1 cut(s)	619
BtsCI	GGATG	5 cut(s)	322, 397, 483, 508, 654
BtsIMutI	CAGTG	2 cut(s)	350, 682
BveI	ACCTGC	1 cut(s)	250
Cac8I	GCNNGC	1 cut(s)	84
CciI	TCATGA	1 cut(s)	91
CfoI	GCGC	2 cut(s)	88, 490
Cfr13I	GGNCC	3 cut(s)	284, 366, 462
CviAII	CATG	6 cut(s)	92, 151, 418, 545, 595, 695
CviJI	RGCY	7 cut(s)	5, 230, 286, 368, 458, 529, 659
CviKI_1	RGCY	7 cut(s)	5, 230, 286, 368, 458, 529, 659
DdeI	CTNAG	3 cut(s)	132, 409, 473
DpnI	GATC	3 cut(s)	341, 398, 444
DpnII	GATC	3 cut(s)	339, 396, 442
Eam1104I	CTCTTC	1 cut(s)	219
EarI	CTCTTC	1 cut(s)	219
Eco130I	CCWWGG	1 cut(s)	594
Eco32I	GATATC	1 cut(s)	114
Eco47I	GGWCC	1 cut(s)	462
Eco57I	CTGAAG	1 cut(s)	51
Eco88I	CYCGRG	1 cut(s)	643
EcoRI	GAATTC	1 cut(s)	537
EcoRV	GATATC	1 cut(s)	114
EcoT14I	CCWWGG	1 cut(s)	594
EcoT22I	ATGCAT	1 cut(s)	183
ErhI	CCWWGG	1 cut(s)	594
FaeI	CATG	6 cut(s)	95, 154, 421, 548, 598, 698
FalI	AAGNNNNNCTT	2 cut(s)	216, 248
FatI	CATG	6 cut(s)	91, 150, 417, 544, 594, 694
FbaI	TGATCA	2 cut(s)	396, 442
FblI	GTMKAC	1 cut(s)	36
Fnu4HI	GCNGC	2 cut(s)	6, 107
FokI	GGATG	5 cut(s)	329, 404, 490, 495, 661
Fsp4HI	GCNGC	2 cut(s)	6, 107
FspBI	CTAG	1 cut(s)	459
GlaI	GCGC	2 cut(s)	87, 489
GluI	GCNGC	2 cut(s)	6, 107
HaeIII	GGCC	2 cut(s)	286, 368
HapII	CCGG	1 cut(s)	453
HhaI	GCGC	2 cut(s)	88, 490
Hin1II	CATG	6 cut(s)	95, 154, 421, 548, 598, 698
Hin6I	GCGC	2 cut(s)	86, 488
HinP1I	GCGC	2 cut(s)	86, 488
HincII	GTYRAC	2 cut(s)	450, 580
HindII	GTYRAC	2 cut(s)	450, 580
HindIII	AAGCTT	1 cut(s)	527
HinfI	GANTC	1 cut(s)	590
HpaII	CCGG	1 cut(s)	453
Hpy166II	GTNNAC	5 cut(s)	37, 450, 505, 573, 580
Hpy188I	TCNGA	4 cut(s)	70, 401, 412, 712
Hpy188III	TCNNGA	3 cut(s)	92, 117, 689
Hpy8I	GTNNAC	5 cut(s)	37, 450, 505, 573, 580
Hpy99I	CGWCG	1 cut(s)	623
HpyAV	CCTTC	1 cut(s)	553
HpyCH4III	ACNGT	2 cut(s)	577, 686
HpyCH4IV	ACGT	1 cut(s)	618
HpyCH4V	TGCA	9 cut(s)	8, 42, 106, 181, 191, 206, 311, 544, 667
HpyF3I	CTNAG	3 cut(s)	132, 409, 473
HpySE526I	ACGT	1 cut(s)	618
Hsp92II	CATG	6 cut(s)	95, 154, 421, 548, 598, 698
HspAI	GCGC	2 cut(s)	86, 488
Ksp22I	TGATCA	2 cut(s)	396, 442
Kzo9I	GATC	3 cut(s)	339, 396, 442
LpnPI	CCDG	6 cut(s)	82, 102, 245, 356, 466, 688
Lsp1109I	GCAGC	1 cut(s)	118
LweI	GCATC	7 cut(s)	168, 190, 193, 475, 574, 613, 639
MaeI	CTAG	1 cut(s)	459
MaeII	ACGT	1 cut(s)	618
MaeIII	GTNAC	1 cut(s)	631
MalI	GATC	3 cut(s)	341, 398, 444
MboI	GATC	3 cut(s)	339, 396, 442
MboII	GAAGA	3 cut(s)	57, 236, 690
MfeI	CAATTG	1 cut(s)	219
MflI	RGATCY	1 cut(s)	339
MhlI	GDGCHC	1 cut(s)	618
MluCI	AATT	5 cut(s)	25, 219, 352, 379, 537
MlyI	GAGTC	1 cut(s)	599
MmeI	TCCRAC	1 cut(s)	118
MnlI	CCTC	6 cut(s)	220, 297, 330, 418, 468, 639
Mph1103I	ATGCAT	1 cut(s)	183
MseI	TTAA	3 cut(s)	24, 146, 234
MslI	CAYNNNNRTG	1 cut(s)	621
MspA1I	CMGCKG	1 cut(s)	109
MspCI	CTTAAG	2 cut(s)	145, 233
MspI	CCGG	1 cut(s)	453
MspR9I	CCNGG	1 cut(s)	454
MunI	CAATTG	1 cut(s)	219
MvnI	CGCG	1 cut(s)	490
NciI	CCSGG	1 cut(s)	454
NcoI	CCATGG	1 cut(s)	594
NdeII	GATC	3 cut(s)	339, 396, 442
NlaIII	CATG	6 cut(s)	95, 154, 421, 548, 598, 698
NlaIV	GGNNCC	1 cut(s)	341
NsiI	ATGCAT	1 cut(s)	183
PagI	TCATGA	1 cut(s)	91
PaqCI	CACCTGC	1 cut(s)	250
PflFI	GACNNNGTC	1 cut(s)	684
PkrI	GCNGC	2 cut(s)	7, 108
PleI	GAGTC	1 cut(s)	598
PpsI	GAGTC	1 cut(s)	598
PspN4I	GGNNCC	1 cut(s)	341
PspPI	GGNCC	3 cut(s)	284, 366, 462
PsuI	RGATCY	1 cut(s)	339
PsyI	GACNNNGTC	1 cut(s)	684
RseI	CAYNNNNRTG	1 cut(s)	621
SaqAI	TTAA	3 cut(s)	24, 146, 234
SatI	GCNGC	2 cut(s)	6, 107
Sau3AI	GATC	3 cut(s)	339, 396, 442
Sau96I	GGNCC	3 cut(s)	284, 366, 462
SchI	GAGTC	1 cut(s)	599
ScrFI	CCNGG	1 cut(s)	454
SduI	GDGCHC	1 cut(s)	618
SetI	ASST	7 cut(s)	138, 264, 307, 531, 564, 621, 661
SfaNI	GCATC	7 cut(s)	168, 190, 193, 475, 574, 613, 639
SinI	GGWCC	1 cut(s)	462
SmiMI	CAYNNNNRTG	1 cut(s)	621
SmlI	CTYRAG	4 cut(s)	30, 145, 233, 689
SmoI	CTYRAG	4 cut(s)	30, 145, 233, 689
Sse9I	AATT	5 cut(s)	25, 219, 352, 379, 537
SsiI	CCGC	2 cut(s)	109, 587
SspI	AATATT	1 cut(s)	211
SspMI	CTAG	1 cut(s)	459
StyD4I	CCNGG	1 cut(s)	452
StyI	CCWWGG	1 cut(s)	594
TaaI	ACNGT	2 cut(s)	577, 686
TaiI	ACGT	1 cut(s)	621
TaqI	TCGA	1 cut(s)	621
TasI	AATT	5 cut(s)	25, 219, 352, 379, 537
Tru1I	TTAA	3 cut(s)	24, 146, 234
Tru9I	TTAA	3 cut(s)	24, 146, 234
TscAI	CASTG	2 cut(s)	350, 689
TseI	GCWGC	2 cut(s)	5, 106
TspDTI	ATGAA	4 cut(s)	80, 167, 312, 537
TspRI	CASTG	2 cut(s)	350, 689
Tth111I	GACNNNGTC	1 cut(s)	684
Vha464I	CTTAAG	2 cut(s)	145, 233
VpaK11BI	GGWCC	1 cut(s)	462
XapI	RAATTY	1 cut(s)	537
XmiI	GTMKAC	1 cut(s)	36
XspI	CTAG	1 cut(s)	459
Zsp2I	ATGCAT	1 cut(s)	183

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.