Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp08

Orthogroup ID

OG0003937

Physical Location & Seq

Genomic Coordinates Reverse (-)

13353281 .. 13358417

Gene Structure 5137 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.8G102100.5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 846 bp

ATGGGGACTAGGGAAAGCAGTGAACCTTCAACTCAGGGTGCGCCCTTTGAAATTCAGAAGAAAGAGGAAACGTTTTTTGATGAGTACACAGAATCATTGACAATATATGAGGAAGGCTCAATAGGTACGGAGTTTGTAGGTAATGGATTGGCGGAAAGTGAGAAGACAATTTCTTTTTCTGGAAATAATGGTTATGGTGCTTCACAAAGTGCTGCAAGCAGAGTTGAGGACTCATCAGATGAGAGTGGTGACGCTAATCGAGATTTTTCAGCAACTCAAAATCAAATGCTTGACCTGATGCATCAAGATGGGGATGCTGAGAATAATTCTACAGACCAGTATAGTGGTACAAATAAAGATTTGGCATTTCAGGATTTTGGGGTAAATGTGCCTGAGACCCATTTGGATTTGGGAATGGGCCTCAATGTCTCCAGTGGTCAAGCCATACGTACCAAGGAAGATTATGAACAGAGAACAGAAAAGAGAAAGCAGTCTAATAGGGAGTCAGCTAAGAGGTCAAGATTACGTAGACAGCAGGAATGTGAGAAACTACGAGCAACTGCAGAGACACTGCAGAGTGAAATTTCCGAGATCCCACAAAAGTTATGGAGGCTTTCTGAGAAATGTGAGAAACTCAATGAAGAAAACAATGACATAATTGATGAACTAGAGAAGACGTATGGTCCAGATGCCGTTTCTGAACTCAAAGCTGCGAAAGTTGAGTCTTTTGATGGCAAAAGCAACAGCCCTGAACCTTTTGATGGCGAAAACAACAGTGCTGAACCGAAAAGTCCAAGCAGAGACAACTCAAGTCCTGATCCTCTAATGCTTAGTTTGGGGCTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MFMR MFMR_assoc bZIP_1

Protein Analysis

282

Amino Acids

31.14

Weight (kDa)

4.47

Isoelectric Point (pI)

61.15

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003937)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g08260 FvH4_2g08260 FvH4_2g08260 FvH4_2g08260
malus_domestica	MD10G1080800.v1.1
prunus_persica	Prupe.8G102100_v2.0.a1 Prupe.8G102100_v2.0.a1 Prupe.8G102100_v2.0.a1 Prupe.8G102100_v2.0.a1 Prupe.8G102100_v2.0.a1 Prupe.8G102100_v2.0.a1 Prupe.8G102100_v2.0.a1 Prupe.8G102100_v2.0.a1 Prupe.8G102100_v2.0.a1 Prupe.8G102100_v2.0.a1 Prupe.8G102100_v2.0.a1 Prupe.8G102100_v2.0.a1 Prupe.8G102100_v2.0.a1 Prupe.8G102100_v2.0.a1 Prupe.8G102100_v2.0.a1 Prupe.8G102100_v2.0.a1
pyrus_communis	pycom10g06400
rosa_chinensis	RchiOBHm_Chr6g0263141
rosa_laevigata	RLG00000014369
rosa_multiflora	Rmu_sc0015149.1_g000003 Rmu_sc0039118.1_g000001
rosa_roxburghii	Rroxscaffold_176G00430940 Rroxscaffold_7G00204630
rosa_rugosa	Rorug06G0003800
rosa_samantha	Rh6AG122900 Rh6BG117900 Rh6CG116100 Rh6DG104600
rosa_wichuraiana	Rw6G010560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	529
AciI	CCGC	1 cut(s)	152
AclI	AACGTT	1 cut(s)	71
AclWI	GGATC	2 cut(s)	586, 812
AcsI	RAATTY	2 cut(s)	51, 582
AdeI	CACNNNGTG	1 cut(s)	209
AfaI	GTAC	4 cut(s)	86, 127, 349, 451
AfiI	CCNNNNNNNGG	1 cut(s)	761
AgsI	TTSAA	2 cut(s)	30, 50
AhdI	GACNNNNNGTC	1 cut(s)	681
AluBI	AGCT	2 cut(s)	509, 710
AluI	AGCT	2 cut(s)	509, 710
Alw26I	GTCTC	4 cut(s)	389, 433, 560, 795
AlwI	GGATC	2 cut(s)	586, 812
AoxI	GGCC	1 cut(s)	418
ApeKI	GCWGC	2 cut(s)	212, 710
ApoI	RAATTY	2 cut(s)	51, 582
ArsI	GACNNNNNNTTYG	2 cut(s)	707, 739
AspLEI	GCGC	1 cut(s)	43
AspS9I	GGNCC	2 cut(s)	418, 683
AsuHPI	GGTGA	1 cut(s)	260
AvaII	GGWCC	1 cut(s)	683
BbsI	GAAGAC	2 cut(s)	170, 680
BbvI	GCAGC	2 cut(s)	199, 697
BccI	CCATC	3 cut(s)	302, 725, 755
BceAI	ACGGC	1 cut(s)	677
BcoDI	GTCTC	4 cut(s)	389, 433, 560, 795
BfaI	CTAG	2 cut(s)	9, 668
BfmI	CTRYAG	3 cut(s)	330, 561, 572
BisI	GCNGC	2 cut(s)	213, 711
BlsI	GCNGC	2 cut(s)	214, 712
Bme18I	GGWCC	1 cut(s)	683
BmeRI	GACNNNNNGTC	1 cut(s)	681
BmgT120I	GGNCC	2 cut(s)	418, 683
BmsI	GCATC	4 cut(s)	288, 304, 310, 679
BpiI	GAAGAC	2 cut(s)	170, 680
BplI	GAGNNNNNCTC	2 cut(s)	101, 133
BpmI	CTGGAG	1 cut(s)	415
BpuEI	CTTGAG	1 cut(s)	793
BsaAI	YACGTR	2 cut(s)	449, 527
BsaI	GGTCTC	1 cut(s)	389
BsaJI	CCNNGG	1 cut(s)	453
Bsc4I	CCNNNNNNNGG	1 cut(s)	761
Bse1I	ACTGG	2 cut(s)	337, 432
BseDI	CCNNGG	1 cut(s)	453
BseGI	GGATG	1 cut(s)	319
BseLI	CCNNNNNNNGG	1 cut(s)	761
BseMII	CTCAG	4 cut(s)	47, 309, 384, 609
BseNI	ACTGG	2 cut(s)	337, 432
BseXI	GCAGC	2 cut(s)	199, 697
BshFI	GGCC	1 cut(s)	420
BslFI	GGGAC	1 cut(s)	19
BslI	CCNNNNNNNGG	1 cut(s)	761
BsmAI	GTCTC	4 cut(s)	389, 433, 560, 795
BsmFI	GGGAC	1 cut(s)	19
BsnI	GGCC	1 cut(s)	420
Bso31I	GGTCTC	1 cut(s)	389
Bsp143I	GATC	2 cut(s)	591, 817
BspACI	CCGC	1 cut(s)	152
BspANI	GGCC	1 cut(s)	420
BspCNI	CTCAG	4 cut(s)	46, 310, 385, 610
BspMAI	CTGCAG	2 cut(s)	565, 576
BspPI	GGATC	2 cut(s)	586, 812
BspTNI	GGTCTC	1 cut(s)	389
BsrI	ACTGG	2 cut(s)	337, 432
BssECI	CCNNGG	1 cut(s)	453
BssMI	GATC	2 cut(s)	591, 817
BssT1I	CCWWGG	1 cut(s)	453
Bst4CI	ACNGT	1 cut(s)	776
BstBAI	YACGTR	2 cut(s)	449, 527
BstC8I	GCNNGC	1 cut(s)	217
BstDEI	CTNAG	6 cut(s)	33, 318, 393, 510, 618, 830
BstF5I	GGATG	1 cut(s)	319
BstHHI	GCGC	1 cut(s)	43
BstKTI	GATC	2 cut(s)	594, 820
BstMAI	GTCTC	4 cut(s)	389, 433, 560, 795
BstMBI	GATC	2 cut(s)	591, 817
BstSFI	CTRYAG	3 cut(s)	330, 561, 572
BstSNI	TACGTA	2 cut(s)	449, 527
BstV1I	GCAGC	2 cut(s)	199, 697
BstV2I	GAAGAC	2 cut(s)	170, 680
BstX2I	RGATCY	1 cut(s)	591
BstXI	CCANNNNNNTGG	1 cut(s)	344
BstYI	RGATCY	1 cut(s)	591
BsuRI	GGCC	1 cut(s)	420
BtsCI	GGATG	1 cut(s)	319
BtsI	GCAGTG	2 cut(s)	25, 569
BtsIMutI	CAGTG	4 cut(s)	25, 439, 569, 781
Cac8I	GCNNGC	1 cut(s)	217
CfoI	GCGC	1 cut(s)	43
Cfr13I	GGNCC	2 cut(s)	418, 683
CseI	GACGC	1 cut(s)	260
Csp6I	GTAC	4 cut(s)	85, 126, 348, 450
CviJI	RGCY	8 cut(s)	117, 420, 443, 509, 613, 710, 747, 841
CviKI_1	RGCY	8 cut(s)	117, 420, 443, 509, 613, 710, 747, 841
CviQI	GTAC	4 cut(s)	85, 126, 348, 450
DdeI	CTNAG	6 cut(s)	33, 318, 393, 510, 618, 830
DpnI	GATC	2 cut(s)	593, 819
DpnII	GATC	2 cut(s)	591, 817
DraIII	CACNNNGTG	1 cut(s)	209
DriI	GACNNNNNGTC	1 cut(s)	681
Eam1105I	GACNNNNNGTC	1 cut(s)	681
EciI	GGCGGA	1 cut(s)	167
Eco105I	TACGTA	2 cut(s)	449, 527
Eco130I	CCWWGG	1 cut(s)	453
Eco31I	GGTCTC	1 cut(s)	389
Eco47I	GGWCC	1 cut(s)	683
EcoT14I	CCWWGG	1 cut(s)	453
EcoT22I	ATGCAT	1 cut(s)	303
ErhI	CCWWGG	1 cut(s)	453
FaqI	GGGAC	1 cut(s)	19
FblI	GTMKAC	1 cut(s)	529
Fnu4HI	GCNGC	2 cut(s)	213, 711
FokI	GGATG	1 cut(s)	326
Fsp4HI	GCNGC	2 cut(s)	213, 711
FspBI	CTAG	2 cut(s)	9, 668
GlaI	GCGC	1 cut(s)	42
GluI	GCNGC	2 cut(s)	213, 711
GsuI	CTGGAG	1 cut(s)	415
HaeIII	GGCC	1 cut(s)	420
HgaI	GACGC	1 cut(s)	260
HhaI	GCGC	1 cut(s)	43
Hin6I	GCGC	1 cut(s)	41
HinP1I	GCGC	1 cut(s)	41
HinfI	GANTC	4 cut(s)	92, 230, 503, 722
HphI	GGTGA	1 cut(s)	260
Hpy166II	GTNNAC	3 cut(s)	23, 87, 530
Hpy188I	TCNGA	5 cut(s)	57, 238, 589, 619, 700
Hpy188III	TCNNGA	7 cut(s)	180, 260, 305, 371, 519, 686, 815
Hpy8I	GTNNAC	3 cut(s)	23, 87, 530
HpyAV	CCTTC	2 cut(s)	36, 107
HpyCH4III	ACNGT	1 cut(s)	776
HpyCH4IV	ACGT	4 cut(s)	71, 448, 526, 677
HpyCH4V	TGCA	4 cut(s)	215, 301, 563, 574
HpyF3I	CTNAG	6 cut(s)	33, 318, 393, 510, 618, 830
HpySE526I	ACGT	4 cut(s)	71, 448, 526, 677
HspAI	GCGC	1 cut(s)	41
Kzo9I	GATC	2 cut(s)	591, 817
Lsp1109I	GCAGC	2 cut(s)	199, 697
LweI	GCATC	4 cut(s)	288, 304, 310, 679
MaeI	CTAG	2 cut(s)	9, 668
MaeII	ACGT	4 cut(s)	71, 448, 526, 677
MaeIII	GTNAC	1 cut(s)	248
MalI	GATC	2 cut(s)	593, 819
MboI	GATC	2 cut(s)	591, 817
MboII	GAAGA	5 cut(s)	70, 175, 470, 653, 685
MflI	RGATCY	1 cut(s)	591
MluCI	AATT	5 cut(s)	51, 168, 325, 582, 657
MlyI	GAGTC	3 cut(s)	224, 512, 731
MnlI	CCTC	7 cut(s)	58, 103, 220, 431, 507, 603, 831
Mph1103I	ATGCAT	1 cut(s)	303
MslI	CAYNNNNRTG	1 cut(s)	306
NdeII	GATC	2 cut(s)	591, 817
NmuCI	GTSAC	1 cut(s)	248
NsiI	ATGCAT	1 cut(s)	303
PfeI	GAWTC	1 cut(s)	92
PkrI	GCNGC	2 cut(s)	214, 712
PleI	GAGTC	3 cut(s)	224, 511, 730
PpsI	GAGTC	3 cut(s)	224, 511, 730
Ppu21I	YACGTR	2 cut(s)	449, 527
Psp1406I	AACGTT	1 cut(s)	71
PspPI	GGNCC	2 cut(s)	418, 683
PstI	CTGCAG	2 cut(s)	565, 576
PsuI	RGATCY	1 cut(s)	591
RsaI	GTAC	4 cut(s)	86, 127, 349, 451
RsaNI	GTAC	4 cut(s)	85, 126, 348, 450
RseI	CAYNNNNRTG	1 cut(s)	306
SatI	GCNGC	2 cut(s)	213, 711
Sau3AI	GATC	2 cut(s)	591, 817
Sau96I	GGNCC	2 cut(s)	418, 683
SchI	GAGTC	3 cut(s)	224, 512, 731
SfaNI	GCATC	4 cut(s)	288, 304, 310, 679
SfcI	CTRYAG	3 cut(s)	330, 561, 572
SinI	GGWCC	1 cut(s)	683
SmiMI	CAYNNNNRTG	1 cut(s)	306
SmlI	CTYRAG	1 cut(s)	808
SmoI	CTYRAG	1 cut(s)	808
SnaBI	TACGTA	2 cut(s)	449, 527
Sse9I	AATT	5 cut(s)	51, 168, 325, 582, 657
SsiI	CCGC	1 cut(s)	152
SspMI	CTAG	2 cut(s)	9, 668
StyI	CCWWGG	1 cut(s)	453
TaaI	ACNGT	1 cut(s)	776
TaiI	ACGT	4 cut(s)	74, 451, 529, 680
TaqI	TCGA	1 cut(s)	259
TasI	AATT	5 cut(s)	51, 168, 325, 582, 657
TatI	WGTACW	1 cut(s)	84
TfiI	GAWTC	1 cut(s)	92
TscAI	CASTG	4 cut(s)	25, 439, 576, 781
TseFI	GTSAC	1 cut(s)	248
TseI	GCWGC	2 cut(s)	212, 710
Tsp45I	GTSAC	1 cut(s)	248
TspDTI	ATGAA	3 cut(s)	480, 654, 678
TspGWI	ACGGA	1 cut(s)	143
TspRI	CASTG	4 cut(s)	25, 439, 576, 781
VpaK11BI	GGWCC	1 cut(s)	683
XapI	RAATTY	2 cut(s)	51, 582
XcmI	CCANNNNNNNNNTGG	1 cut(s)	603
XmiI	GTMKAC	1 cut(s)	529
XspI	CTAG	2 cut(s)	9, 668
Zsp2I	ATGCAT	1 cut(s)	303

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.