Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0003937

Physical Location & Seq

Genomic Coordinates Reverse (-)

52250970 .. 52256340

Gene Structure 5371 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000014369

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1092 bp

ATGTGGTGGTCGATTGTGGGTCACATTGGCTATTTGGGGAAATGCAAGGCTTCAGTGGCCATTGTTGAGATCTATGGCTTGTACGTTCTCTACCCTGCAAAAAACCGAAACCTACTGTCTCTACTCCCTCTCCTTCTCTTTCTCTTGTTTGGCGCCACAAACACTTTGACAGGATTGCAAATTTGCTATACCATGGAGACTAAGGAAACCAGTGCTGCTTCAACTCAGGGTGTGGCATTAGAAATTCAAGATAAAGAAGAAAGGGTTCTCAATGAGAAGGACATGGAATCAATGACGCCAATGACAACAACTAAGGAAGGCTCAGTAGACATTGAGGTGGTAGGCAATAGAGGTGCAGATAGCGAAAAGGAAACTTCTTTTTCTGGAAATAGTGGTGACGGTGTTTCACAGGGTGCTGCAGGCAGAGGCGAGGATTCATCAGATGAGAATGCTGACACTAACCGAGATTTTTCTGCAATTCAAAAGCAAATTTTTAACCAGATGGGGGCAGTTCAGAATAATTCTAGAGTCCTTTATAGTGGCATGGATACAAATTTGAAATTGTTGAATATTGGGGTAAACATGCCTGAAACCCATCCGAATTCGGGACTGGACCTGAATGTATCCAGTGCTCATGCCATACACACAGAGGAAGATCACGACTGGAGAAGAAGAGAAAAGAGAAAGCAGTCTAATAGGGAGTCAGCTAAGAGGTCAAGATTCCGTAGGCAGCAAGAATGTGAGAAACTACGAGAAACTGCAGCGATGCTGAATAGTGAAATCTCGGAGCTCCCAAATGAGTTAAGAAGGCTTTCTGAGGAGTGTGGGAAACTTGATGAAGAAAACAGTTCCCTAATTGATGAGATGGAGAAGATGTATGGTCCAGATGCAGTTGCTGATCTCAGAGCTGTGAAAGTCAACTCTTCCGATGATGGAAGCAACAGCATCGAATCAAAAACTCCAAGCAGAGACAACTCAACTTCTCCTACTCCTCATCAAAAAGAGACTTCTCCTACTCCTGAGCCTCGATTATTTGGTGTCAGCCTACGACCAAACTTGGCTGATTGTTTACATAGTTCAAAGGTCCAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MFMR MFMR_assoc bZIP_1

Protein Analysis

364

Amino Acids

40.19

Weight (kDa)

5.17

Isoelectric Point (pI)

49.46

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
bZIP_1	PF00170	224 - 282	1.2e-11	bZIP transcription factor

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003937)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g08260 FvH4_2g08260 FvH4_2g08260 FvH4_2g08260
malus_domestica	MD10G1080800.v1.1
prunus_persica	Prupe.8G102100_v2.0.a1 Prupe.8G102100_v2.0.a1 Prupe.8G102100_v2.0.a1 Prupe.8G102100_v2.0.a1 Prupe.8G102100_v2.0.a1 Prupe.8G102100_v2.0.a1 Prupe.8G102100_v2.0.a1 Prupe.8G102100_v2.0.a1 Prupe.8G102100_v2.0.a1 Prupe.8G102100_v2.0.a1 Prupe.8G102100_v2.0.a1 Prupe.8G102100_v2.0.a1 Prupe.8G102100_v2.0.a1 Prupe.8G102100_v2.0.a1 Prupe.8G102100_v2.0.a1 Prupe.8G102100_v2.0.a1
pyrus_communis	pycom10g06400
rosa_chinensis	RchiOBHm_Chr6g0263141
rosa_laevigata	RLG00000014369
rosa_multiflora	Rmu_sc0015149.1_g000003 Rmu_sc0039118.1_g000001
rosa_roxburghii	Rroxscaffold_176G00430940 Rroxscaffold_7G00204630
rosa_rugosa	Rorug06G0003800
rosa_samantha	Rh6AG122900 Rh6BG117900 Rh6CG116100 Rh6DG104600
rosa_wichuraiana	Rw6G010560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	152
AccI	GTMKAC	1 cut(s)	327
AcoI	YGGCCR	1 cut(s)	57
AcsI	RAATTY	5 cut(s)	180, 243, 489, 553, 601
AcuI	CTGAAG	1 cut(s)	36
AcyI	GRCGYC	2 cut(s)	153, 296
AdeI	CACNNNGTG	1 cut(s)	413
AfaI	GTAC	1 cut(s)	83
AfiI	CCNNNNNNNGG	2 cut(s)	505, 605
AgsI	TTSAA	6 cut(s)	222, 248, 482, 559, 568, 1080
AluBI	AGCT	3 cut(s)	707, 790, 908
AluI	AGCT	3 cut(s)	707, 790, 908
Alw21I	GWGCWC	2 cut(s)	634, 792
Alw26I	GTCTC	4 cut(s)	123, 191, 963, 998
AlwNI	CAGNNNCTG	1 cut(s)	896
AoxI	GGCC	1 cut(s)	57
ApeKI	GCWGC	4 cut(s)	215, 416, 730, 761
ApoI	RAATTY	5 cut(s)	180, 243, 489, 553, 601
Asp700I	GAANNNNTTC	2 cut(s)	264, 811
AspLEI	GCGC	1 cut(s)	155
AspS9I	GGNCC	3 cut(s)	613, 881, 1084
AsuHPI	GGTGA	1 cut(s)	407
AvaII	GGWCC	3 cut(s)	613, 881, 1084
BalI	TGGCCA	1 cut(s)	59
BanI	GGYRCC	1 cut(s)	152
BanII	GRGCYC	1 cut(s)	792
Bbv12I	GWGCWC	2 cut(s)	634, 792
BbvI	GCAGC	4 cut(s)	202, 403, 742, 773
BccI	CCATC	4 cut(s)	496, 603, 859, 926
BcgI	CGANNNNNNTGC	2 cut(s)	928, 962
BciVI	GTATCC	2 cut(s)	541, 634
BcoDI	GTCTC	4 cut(s)	123, 191, 963, 998
BfaI	CTAG	1 cut(s)	525
BfmI	CTRYAG	2 cut(s)	417, 759
BfoI	RGCGCY	1 cut(s)	156
BfuI	GTATCC	2 cut(s)	541, 634
BglII	AGATCT	1 cut(s)	69
BisI	GCNGC	4 cut(s)	216, 417, 731, 762
BlsI	GCNGC	4 cut(s)	217, 418, 732, 763
Bme18I	GGWCC	3 cut(s)	613, 881, 1084
BmgT120I	GGNCC	3 cut(s)	613, 881, 1084
BmiI	GGNNCC	1 cut(s)	154
BmsI	GCATC	3 cut(s)	756, 877, 954
BpmI	CTGGAG	1 cut(s)	685
Bpu10I	CCTNAGC	1 cut(s)	1020
BsaHI	GRCGYC	2 cut(s)	153, 296
BsaJI	CCNNGG	1 cut(s)	192
BsaXI	ACNNNNNCTCC	4 cut(s)	114, 144, 860, 890
Bsc4I	CCNNNNNNNGG	2 cut(s)	505, 605
Bse1I	ACTGG	5 cut(s)	210, 615, 627, 668, 1087
BseDI	CCNNGG	1 cut(s)	192
BseGI	GGATG	1 cut(s)	595
BseLI	CCNNNNNNNGG	2 cut(s)	505, 605
BseMII	CTCAG	5 cut(s)	239, 336, 807, 916, 1011
BseNI	ACTGG	5 cut(s)	210, 615, 627, 668, 1087
BseRI	GAGGAG	2 cut(s)	833, 981
BseXI	GCAGC	4 cut(s)	202, 403, 742, 773
BsgI	GTGCAG	1 cut(s)	375
BshFI	GGCC	1 cut(s)	59
BshNI	GGYRCC	1 cut(s)	152
BsiHKAI	GWGCWC	2 cut(s)	634, 792
BslFI	GGGAC	1 cut(s)	621
BslI	CCNNNNNNNGG	2 cut(s)	505, 605
BsmAI	GTCTC	4 cut(s)	123, 191, 963, 998
BsmFI	GGGAC	1 cut(s)	621
BsmI	GAATGC	1 cut(s)	454
BsnI	GGCC	1 cut(s)	59
Bsp1286I	GDGCHC	2 cut(s)	634, 792
Bsp143I	GATC	3 cut(s)	69, 655, 898
Bsp19I	CCATGG	1 cut(s)	192
BspANI	GGCC	1 cut(s)	59
BspCNI	CTCAG	5 cut(s)	238, 335, 808, 915, 1012
BspLI	GGNNCC	1 cut(s)	154
BspMAI	CTGCAG	2 cut(s)	421, 763
BspT107I	GGYRCC	1 cut(s)	152
BsrI	ACTGG	5 cut(s)	210, 615, 627, 668, 1087
BssECI	CCNNGG	1 cut(s)	192
BssMI	GATC	3 cut(s)	69, 655, 898
BssNI	GRCGYC	2 cut(s)	153, 296
BssT1I	CCWWGG	1 cut(s)	192
Bst4CI	ACNGT	3 cut(s)	117, 401, 848
Bst6I	CTCTTC	2 cut(s)	667, 928
BstACI	GRCGYC	2 cut(s)	153, 296
BstC8I	GCNNGC	1 cut(s)	421
BstDEI	CTNAG	8 cut(s)	201, 225, 312, 322, 708, 816, 902, 1020
BstDSI	CCRYGG	1 cut(s)	192
BstF5I	GGATG	1 cut(s)	595
BstH2I	RGCGCY	1 cut(s)	156
BstHHI	GCGC	1 cut(s)	155
BstKTI	GATC	3 cut(s)	72, 658, 901
BstMAI	GTCTC	4 cut(s)	123, 191, 963, 998
BstMBI	GATC	3 cut(s)	69, 655, 898
BstMWI	GCNNNNNNNGC	1 cut(s)	56
BstNSI	RCATGY	1 cut(s)	586
BstSFI	CTRYAG	2 cut(s)	417, 759
BstV1I	GCAGC	4 cut(s)	202, 403, 742, 773
BstX2I	RGATCY	1 cut(s)	69
BstYI	RGATCY	1 cut(s)	69
BsuI	GTATCC	2 cut(s)	541, 634
BsuRI	GGCC	1 cut(s)	59
BtgI	CCRYGG	1 cut(s)	192
BtgZI	GCGATG	1 cut(s)	779
BtsCI	GGATG	1 cut(s)	595
BtsIMutI	CAGTG	3 cut(s)	60, 217, 634
Cac8I	GCNNGC	1 cut(s)	421
CaiI	CAGNNNCTG	1 cut(s)	896
CfoI	GCGC	1 cut(s)	155
Cfr13I	GGNCC	3 cut(s)	613, 881, 1084
CseI	GACGC	1 cut(s)	304
Csp6I	GTAC	1 cut(s)	82
CviAII	CATG	5 cut(s)	193, 283, 544, 583, 635
CviQI	GTAC	1 cut(s)	82
DdeI	CTNAG	8 cut(s)	201, 225, 312, 322, 708, 816, 902, 1020
DinI	GGCGCC	1 cut(s)	154
DpnI	GATC	3 cut(s)	71, 657, 900
DpnII	GATC	3 cut(s)	69, 655, 898
DraIII	CACNNNGTG	1 cut(s)	413
EaeI	YGGCCR	1 cut(s)	57
Eam1104I	CTCTTC	2 cut(s)	667, 928
EarI	CTCTTC	2 cut(s)	667, 928
Ecl136II	GAGCTC	1 cut(s)	790
Eco130I	CCWWGG	1 cut(s)	192
Eco24I	GRGCYC	1 cut(s)	792
Eco47I	GGWCC	3 cut(s)	613, 881, 1084
Eco53kI	GAGCTC	1 cut(s)	790
Eco57I	CTGAAG	1 cut(s)	36
EcoICRI	GAGCTC	1 cut(s)	790
EcoRI	GAATTC	1 cut(s)	601
EcoT14I	CCWWGG	1 cut(s)	192
EcoT38I	GRGCYC	1 cut(s)	792
EgeI	GGCGCC	1 cut(s)	154
EheI	GGCGCC	1 cut(s)	154
ErhI	CCWWGG	1 cut(s)	192
FaeI	CATG	5 cut(s)	196, 286, 547, 586, 638
FaqI	GGGAC	1 cut(s)	621
FatI	CATG	5 cut(s)	192, 282, 543, 582, 634
FblI	GTMKAC	1 cut(s)	327
Fnu4HI	GCNGC	4 cut(s)	216, 417, 731, 762
FokI	GGATG	1 cut(s)	582
FriOI	GRGCYC	1 cut(s)	792
Fsp4HI	GCNGC	4 cut(s)	216, 417, 731, 762
FspBI	CTAG	1 cut(s)	525
GlaI	GCGC	1 cut(s)	154
GluI	GCNGC	4 cut(s)	216, 417, 731, 762
GsuI	CTGGAG	1 cut(s)	685
HaeII	RGCGCY	1 cut(s)	156
HaeIII	GGCC	1 cut(s)	59
HgaI	GACGC	1 cut(s)	304
HhaI	GCGC	1 cut(s)	155
Hin1I	GRCGYC	2 cut(s)	153, 296
Hin1II	CATG	5 cut(s)	196, 286, 547, 586, 638
Hin6I	GCGC	1 cut(s)	153
HinP1I	GCGC	1 cut(s)	153
HincII	GTYRAC	1 cut(s)	919
HindII	GTYRAC	1 cut(s)	919
HinfI	GANTC	6 cut(s)	287, 434, 528, 701, 720, 950
HphI	GGTGA	1 cut(s)	407
Hpy166II	GTNNAC	4 cut(s)	328, 580, 919, 1070
Hpy188I	TCNGA	7 cut(s)	442, 516, 600, 787, 817, 905, 928
Hpy188III	TCNNGA	8 cut(s)	248, 384, 525, 606, 659, 717, 884, 1019
Hpy8I	GTNNAC	4 cut(s)	328, 580, 919, 1070
HpyAV	CCTTC	4 cut(s)	143, 271, 311, 801
HpyCH4III	ACNGT	3 cut(s)	117, 401, 848
HpyCH4IV	ACGT	1 cut(s)	84
HpyCH4V	TGCA	8 cut(s)	45, 98, 178, 356, 419, 476, 761, 890
HpyF10VI	GCNNNNNNNGC	1 cut(s)	56
HpyF3I	CTNAG	8 cut(s)	201, 225, 312, 322, 708, 816, 902, 1020
HpySE526I	ACGT	1 cut(s)	84
Hsp92I	GRCGYC	2 cut(s)	153, 296
Hsp92II	CATG	5 cut(s)	196, 286, 547, 586, 638
HspAI	GCGC	1 cut(s)	153
KasI	GGCGCC	1 cut(s)	152
Kzo9I	GATC	3 cut(s)	69, 655, 898
LmnI	GCTCC	2 cut(s)	787, 795
Lsp1109I	GCAGC	4 cut(s)	202, 403, 742, 773
LweI	GCATC	3 cut(s)	756, 877, 954
MaeI	CTAG	1 cut(s)	525
MaeII	ACGT	1 cut(s)	84
MaeIII	GTNAC	2 cut(s)	20, 395
MalI	GATC	3 cut(s)	71, 657, 900
MboI	GATC	3 cut(s)	69, 655, 898
MboII	GAAGA	7 cut(s)	269, 665, 681, 684, 851, 883, 915
MflI	RGATCY	1 cut(s)	69
MhlI	GDGCHC	2 cut(s)	634, 792
MlsI	TGGCCA	1 cut(s)	59
MluCI	AATT	9 cut(s)	180, 243, 477, 489, 520, 553, 560, 601, 855
MluNI	TGGCCA	1 cut(s)	59
Mly113I	GGCGCC	1 cut(s)	153
MlyI	GAGTC	2 cut(s)	537, 710
Mox20I	TGGCCA	1 cut(s)	59
MroXI	GAANNNNTTC	2 cut(s)	264, 811
MscI	TGGCCA	1 cut(s)	59
MseI	TTAA	2 cut(s)	495, 803
MslI	CAYNNNNRTG	1 cut(s)	335
Msp20I	TGGCCA	1 cut(s)	59
Mva1269I	GAATGC	1 cut(s)	454
MwoI	GCNNNNNNNGC	1 cut(s)	56
NarI	GGCGCC	1 cut(s)	153
NcoI	CCATGG	1 cut(s)	192
NdeII	GATC	3 cut(s)	69, 655, 898
NlaIII	CATG	5 cut(s)	196, 286, 547, 586, 638
NlaIV	GGNNCC	1 cut(s)	154
NmuCI	GTSAC	2 cut(s)	20, 395
NspI	RCATGY	1 cut(s)	586
PctI	GAATGC	1 cut(s)	454
PdmI	GAANNNNTTC	2 cut(s)	264, 811
PfeI	GAWTC	4 cut(s)	287, 434, 720, 950
PkrI	GCNGC	4 cut(s)	217, 418, 732, 763
PleI	GAGTC	2 cut(s)	536, 709
PluTI	GGCGCC	1 cut(s)	156
PpsI	GAGTC	2 cut(s)	536, 709
Psp124BI	GAGCTC	1 cut(s)	792
PspN4I	GGNNCC	1 cut(s)	154
PspPI	GGNCC	3 cut(s)	613, 881, 1084
PstI	CTGCAG	2 cut(s)	421, 763
PstNI	CAGNNNCTG	1 cut(s)	896
PsuI	RGATCY	1 cut(s)	69
RsaI	GTAC	1 cut(s)	83
RsaNI	GTAC	1 cut(s)	82
RseI	CAYNNNNRTG	1 cut(s)	335
SacI	GAGCTC	1 cut(s)	792
SaqAI	TTAA	2 cut(s)	495, 803
SatI	GCNGC	4 cut(s)	216, 417, 731, 762
Sau3AI	GATC	3 cut(s)	69, 655, 898
Sau96I	GGNCC	3 cut(s)	613, 881, 1084
SchI	GAGTC	2 cut(s)	537, 710
SduI	GDGCHC	2 cut(s)	634, 792
SfaNI	GCATC	3 cut(s)	756, 877, 954
SfcI	CTRYAG	2 cut(s)	417, 759
SfoI	GGCGCC	1 cut(s)	154
SinI	GGWCC	3 cut(s)	613, 881, 1084
SmiMI	CAYNNNNRTG	1 cut(s)	335
Sse9I	AATT	9 cut(s)	180, 243, 477, 489, 520, 553, 560, 601, 855
SspDI	GGCGCC	1 cut(s)	152
SspI	AATATT	1 cut(s)	571
SspMI	CTAG	1 cut(s)	525
SstI	GAGCTC	1 cut(s)	792
StyI	CCWWGG	1 cut(s)	192
TaaI	ACNGT	3 cut(s)	117, 401, 848
TaiI	ACGT	1 cut(s)	87
TaqI	TCGA	3 cut(s)	11, 948, 1027
TasI	AATT	9 cut(s)	180, 243, 477, 489, 520, 553, 560, 601, 855
TfiI	GAWTC	4 cut(s)	287, 434, 720, 950
Tru1I	TTAA	2 cut(s)	495, 803
Tru9I	TTAA	2 cut(s)	495, 803
TscAI	CASTG	3 cut(s)	60, 217, 634
TseFI	GTSAC	2 cut(s)	20, 395
TseI	GCWGC	4 cut(s)	215, 416, 730, 761
Tsp45I	GTSAC	2 cut(s)	20, 395
TspDTI	ATGAA	2 cut(s)	426, 852
TspGWI	ACGGA	1 cut(s)	713
TspRI	CASTG	3 cut(s)	60, 217, 634
VpaK11BI	GGWCC	3 cut(s)	613, 881, 1084
XapI	RAATTY	5 cut(s)	180, 243, 489, 553, 601
XbaI	TCTAGA	1 cut(s)	524
XceI	RCATGY	1 cut(s)	586
XmiI	GTMKAC	1 cut(s)	327
XmnI	GAANNNNTTC	2 cut(s)	264, 811
XspI	CTAG	1 cut(s)	525

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.