Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0003937

Physical Location & Seq

Genomic Coordinates Forward (+)

18309465 .. 18313678

Gene Structure 4214 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG122900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1101 bp

ATGAACGGCTTCTTCTGGACCGTTGATATTACCGTTCAACATATTATCTTACATTCTTACACTACTTGCTCTCTCCGTATATATAACAAGCTCCAGCTCTACCCTGCAAAAAACCGAAACCTACTGTCTCTACTCCCTCTCCTTCTCTTTCTCTTGTTTGGCGCCACAAACACTTTGACAGGATTGCAAATTTGCTATACCATGGAGGCTAAGGAAACCAGTGCTGCTTCAACTCAGGGTGTGGCATTAGAAATTCAAGATAAAGAAGAAAGGGTTCTCAATGAGAAGGACATGGAATCAATGACGCCAATGACAACAACTAAGGAAGGCTCAGTAGACATTGAGGTGGTAGGCAATAGAGTTGCAGATAGCGAAAAGGAAACTTCTTTTTCTGGAAATAGTGGTGACGGTGTTTCACAGGGTGCTGCAGGCAGAGGTGAGGATTCATCAGATGAGAATGCTGACACTAACCGAGATTTTTCTGCAATTCAAAAGAAATTTTTTAACCAGATGGGGGCAGTTCAGAATAATTCTAGAGTCATTTATAGTGGCATGGATACAAATTTGAAATTGTTGAATATTGGGGTAAACATGCCTGAAACCCATCCGAATTCGGGACTGGACCTGAATGTATCCAGTGCTCATGCCATACACACTGAGGAAGATCACGACTGGAGAAGAAGAGAAAAGAGAAAGCAGTCTAATAGGGAGTCAGCTAAGAGGTCAAGATTCCGTAGGCAGCAAGAATGTGAGAAACTACGAGAAACTGCAGCGCTGCTGAATAGTGAAATCTTGGAGCTCCCAAATGAGTTAAGAAGGCTTTCTGAGGAGTGTGGGAAACTTGATGAAGAAAACAGTTCCCTAATTGATGAGATGGAGAAGATGTATGGTCCAGATGCAGTTGCTGATCTCAGAGCTGTGAAAGTCAACTCTTCCGATGATGGAAGCAACAGCATCGAATCAAAAACTCCAAGCAGAGACAACTCAACTTCTCCTACTCCTCATCAAAAAGAGACTTCTCCTACTCCTGAGCCTCGATTATTTGGTGTCAGCCTACGACCAAACTTGGCTGATTGTTTACATAGTTCAAAGGTCCAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MFMR MFMR_assoc bZIP_1

Protein Analysis

366

Amino Acids

40.83

Weight (kDa)

5.29

Isoelectric Point (pI)

50.72

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
bZIP_1	PF00170	227 - 285	2.9e-11	bZIP transcription factor

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003937)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g08260 FvH4_2g08260 FvH4_2g08260 FvH4_2g08260
malus_domestica	MD10G1080800.v1.1
prunus_persica	Prupe.8G102100_v2.0.a1 Prupe.8G102100_v2.0.a1 Prupe.8G102100_v2.0.a1 Prupe.8G102100_v2.0.a1 Prupe.8G102100_v2.0.a1 Prupe.8G102100_v2.0.a1 Prupe.8G102100_v2.0.a1 Prupe.8G102100_v2.0.a1 Prupe.8G102100_v2.0.a1 Prupe.8G102100_v2.0.a1 Prupe.8G102100_v2.0.a1 Prupe.8G102100_v2.0.a1 Prupe.8G102100_v2.0.a1 Prupe.8G102100_v2.0.a1 Prupe.8G102100_v2.0.a1 Prupe.8G102100_v2.0.a1
pyrus_communis	pycom10g06400
rosa_chinensis	RchiOBHm_Chr6g0263141
rosa_laevigata	RLG00000014369
rosa_multiflora	Rmu_sc0015149.1_g000003 Rmu_sc0039118.1_g000001
rosa_roxburghii	Rroxscaffold_176G00430940 Rroxscaffold_7G00204630
rosa_rugosa	Rorug06G0003800
rosa_samantha	Rh6AG122900 Rh6BG117900 Rh6CG116100 Rh6DG104600
rosa_wichuraiana	Rw6G010560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	161
AccI	GTMKAC	1 cut(s)	336
AcsI	RAATTY	5 cut(s)	189, 252, 497, 562, 610
AcyI	GRCGYC	2 cut(s)	162, 305
AdeI	CACNNNGTG	1 cut(s)	422
AfeI	AGCGCT	1 cut(s)	774
AfiI	CCNNNNNNNGG	2 cut(s)	514, 614
AgsI	TTSAA	7 cut(s)	38, 231, 257, 491, 568, 577, 1089
AluBI	AGCT	5 cut(s)	91, 97, 716, 799, 917
AluI	AGCT	5 cut(s)	91, 97, 716, 799, 917
Alw21I	GWGCWC	2 cut(s)	643, 801
Alw26I	GTCTC	3 cut(s)	132, 972, 1007
AlwNI	CAGNNNCTG	1 cut(s)	905
Aor51HI	AGCGCT	1 cut(s)	774
ApeKI	GCWGC	5 cut(s)	224, 425, 739, 770, 775
ApoI	RAATTY	5 cut(s)	189, 252, 497, 562, 610
Asp700I	GAANNNNTTC	3 cut(s)	8, 273, 820
AspLEI	GCGC	2 cut(s)	164, 775
AspS9I	GGNCC	4 cut(s)	18, 622, 890, 1093
AsuHPI	GGTGA	2 cut(s)	416, 449
AvaII	GGWCC	4 cut(s)	18, 622, 890, 1093
BanI	GGYRCC	1 cut(s)	161
BanII	GRGCYC	1 cut(s)	801
Bbv12I	GWGCWC	2 cut(s)	643, 801
BbvI	GCAGC	5 cut(s)	211, 412, 751, 762, 782
BccI	CCATC	4 cut(s)	505, 612, 868, 935
BceAI	ACGGC	1 cut(s)	22
BcgI	CGANNNNNNTGC	2 cut(s)	937, 971
BciVI	GTATCC	2 cut(s)	550, 643
BcoDI	GTCTC	3 cut(s)	132, 972, 1007
BfaI	CTAG	1 cut(s)	534
BfmI	CTRYAG	2 cut(s)	426, 768
BfoI	RGCGCY	2 cut(s)	165, 776
BfuI	GTATCC	2 cut(s)	550, 643
BisI	GCNGC	5 cut(s)	225, 426, 740, 771, 776
BlsI	GCNGC	5 cut(s)	226, 427, 741, 772, 777
Bme18I	GGWCC	4 cut(s)	18, 622, 890, 1093
BmgT120I	GGNCC	4 cut(s)	18, 622, 890, 1093
BmiI	GGNNCC	1 cut(s)	163
BmsI	GCATC	2 cut(s)	886, 963
BpmI	CTGGAG	2 cut(s)	77, 694
Bpu10I	CCTNAGC	2 cut(s)	210, 1029
BsaHI	GRCGYC	2 cut(s)	162, 305
BsaJI	CCNNGG	1 cut(s)	201
BsaXI	ACNNNNNCTCC	4 cut(s)	123, 153, 869, 899
Bsc4I	CCNNNNNNNGG	2 cut(s)	514, 614
Bse1I	ACTGG	5 cut(s)	219, 624, 636, 677, 1096
BseDI	CCNNGG	1 cut(s)	201
BseGI	GGATG	1 cut(s)	604
BseLI	CCNNNNNNNGG	2 cut(s)	514, 614
BseMII	CTCAG	6 cut(s)	248, 345, 648, 816, 925, 1020
BseNI	ACTGG	5 cut(s)	219, 624, 636, 677, 1096
BseRI	GAGGAG	2 cut(s)	842, 990
BseXI	GCAGC	5 cut(s)	211, 412, 751, 762, 782
BshNI	GGYRCC	1 cut(s)	161
BsiHKAI	GWGCWC	2 cut(s)	643, 801
BslFI	GGGAC	1 cut(s)	630
BslI	CCNNNNNNNGG	2 cut(s)	514, 614
BsmAI	GTCTC	3 cut(s)	132, 972, 1007
BsmFI	GGGAC	1 cut(s)	630
BsmI	GAATGC	1 cut(s)	463
Bsp1286I	GDGCHC	2 cut(s)	643, 801
Bsp143I	GATC	2 cut(s)	664, 907
Bsp19I	CCATGG	1 cut(s)	201
BspCNI	CTCAG	6 cut(s)	247, 344, 649, 817, 924, 1021
BspLI	GGNNCC	1 cut(s)	163
BspMAI	CTGCAG	2 cut(s)	430, 772
BspT107I	GGYRCC	1 cut(s)	161
BsrI	ACTGG	5 cut(s)	219, 624, 636, 677, 1096
BssECI	CCNNGG	1 cut(s)	201
BssMI	GATC	2 cut(s)	664, 907
BssNI	GRCGYC	2 cut(s)	162, 305
BssT1I	CCWWGG	1 cut(s)	201
Bst4CI	ACNGT	5 cut(s)	22, 34, 126, 410, 857
Bst6I	CTCTTC	2 cut(s)	676, 937
BstACI	GRCGYC	2 cut(s)	162, 305
BstC8I	GCNNGC	1 cut(s)	430
BstDEI	CTNAG	9 cut(s)	210, 234, 321, 331, 657, 717, 825, 911, 1029
BstDSI	CCRYGG	1 cut(s)	201
BstF5I	GGATG	1 cut(s)	604
BstH2I	RGCGCY	2 cut(s)	165, 776
BstHHI	GCGC	2 cut(s)	164, 775
BstKTI	GATC	2 cut(s)	667, 910
BstMAI	GTCTC	3 cut(s)	132, 972, 1007
BstMBI	GATC	2 cut(s)	664, 907
BstNSI	RCATGY	1 cut(s)	595
BstSFI	CTRYAG	2 cut(s)	426, 768
BstV1I	GCAGC	5 cut(s)	211, 412, 751, 762, 782
BsuI	GTATCC	2 cut(s)	550, 643
BtgI	CCRYGG	1 cut(s)	201
BtsCI	GGATG	1 cut(s)	604
BtsIMutI	CAGTG	3 cut(s)	226, 643, 654
Cac8I	GCNNGC	1 cut(s)	430
CaiI	CAGNNNCTG	1 cut(s)	905
CfoI	GCGC	2 cut(s)	164, 775
Cfr13I	GGNCC	4 cut(s)	18, 622, 890, 1093
CseI	GACGC	1 cut(s)	313
CviAII	CATG	5 cut(s)	202, 292, 553, 592, 644
DdeI	CTNAG	9 cut(s)	210, 234, 321, 331, 657, 717, 825, 911, 1029
DinI	GGCGCC	1 cut(s)	163
DpnI	GATC	2 cut(s)	666, 909
DpnII	GATC	2 cut(s)	664, 907
DraIII	CACNNNGTG	1 cut(s)	422
Eam1104I	CTCTTC	2 cut(s)	676, 937
EarI	CTCTTC	2 cut(s)	676, 937
Ecl136II	GAGCTC	1 cut(s)	799
Eco130I	CCWWGG	1 cut(s)	201
Eco24I	GRGCYC	1 cut(s)	801
Eco47I	GGWCC	4 cut(s)	18, 622, 890, 1093
Eco47III	AGCGCT	1 cut(s)	774
Eco53kI	GAGCTC	1 cut(s)	799
EcoICRI	GAGCTC	1 cut(s)	799
EcoRI	GAATTC	1 cut(s)	610
EcoT14I	CCWWGG	1 cut(s)	201
EcoT38I	GRGCYC	1 cut(s)	801
EgeI	GGCGCC	1 cut(s)	163
EheI	GGCGCC	1 cut(s)	163
ErhI	CCWWGG	1 cut(s)	201
FaeI	CATG	5 cut(s)	205, 295, 556, 595, 647
FaqI	GGGAC	1 cut(s)	630
FatI	CATG	5 cut(s)	201, 291, 552, 591, 643
FblI	GTMKAC	1 cut(s)	336
Fnu4HI	GCNGC	5 cut(s)	225, 426, 740, 771, 776
FokI	GGATG	1 cut(s)	591
FriOI	GRGCYC	1 cut(s)	801
Fsp4HI	GCNGC	5 cut(s)	225, 426, 740, 771, 776
FspBI	CTAG	1 cut(s)	534
GlaI	GCGC	2 cut(s)	163, 774
GluI	GCNGC	5 cut(s)	225, 426, 740, 771, 776
GsuI	CTGGAG	2 cut(s)	77, 694
HaeII	RGCGCY	2 cut(s)	165, 776
HgaI	GACGC	1 cut(s)	313
HhaI	GCGC	2 cut(s)	164, 775
Hin1I	GRCGYC	2 cut(s)	162, 305
Hin1II	CATG	5 cut(s)	205, 295, 556, 595, 647
Hin6I	GCGC	2 cut(s)	162, 773
HinP1I	GCGC	2 cut(s)	162, 773
HincII	GTYRAC	1 cut(s)	928
HindII	GTYRAC	1 cut(s)	928
HinfI	GANTC	6 cut(s)	296, 443, 537, 710, 729, 959
HphI	GGTGA	2 cut(s)	416, 449
Hpy166II	GTNNAC	4 cut(s)	337, 589, 928, 1079
Hpy188I	TCNGA	6 cut(s)	451, 525, 609, 826, 914, 937
Hpy188III	TCNNGA	9 cut(s)	16, 257, 393, 534, 615, 668, 726, 893, 1028
Hpy8I	GTNNAC	4 cut(s)	337, 589, 928, 1079
HpyAV	CCTTC	4 cut(s)	152, 280, 320, 810
HpyCH4III	ACNGT	5 cut(s)	22, 34, 126, 410, 857
HpyCH4V	TGCA	7 cut(s)	107, 187, 365, 428, 485, 770, 899
HpyF3I	CTNAG	9 cut(s)	210, 234, 321, 331, 657, 717, 825, 911, 1029
Hsp92I	GRCGYC	2 cut(s)	162, 305
Hsp92II	CATG	5 cut(s)	205, 295, 556, 595, 647
HspAI	GCGC	2 cut(s)	162, 773
KasI	GGCGCC	1 cut(s)	161
Kzo9I	GATC	2 cut(s)	664, 907
LmnI	GCTCC	3 cut(s)	96, 796, 804
Lsp1109I	GCAGC	5 cut(s)	211, 412, 751, 762, 782
LweI	GCATC	2 cut(s)	886, 963
MaeI	CTAG	1 cut(s)	534
MaeIII	GTNAC	1 cut(s)	404
MalI	GATC	2 cut(s)	666, 909
MboI	GATC	2 cut(s)	664, 907
MboII	GAAGA	8 cut(s)	4, 278, 674, 690, 693, 860, 892, 924
MhlI	GDGCHC	2 cut(s)	643, 801
MluCI	AATT	9 cut(s)	189, 252, 486, 497, 529, 562, 569, 610, 864
Mly113I	GGCGCC	1 cut(s)	162
MlyI	GAGTC	2 cut(s)	546, 719
MroXI	GAANNNNTTC	3 cut(s)	8, 273, 820
MseI	TTAA	2 cut(s)	504, 812
MslI	CAYNNNNRTG	1 cut(s)	344
Mva1269I	GAATGC	1 cut(s)	463
NarI	GGCGCC	1 cut(s)	162
NcoI	CCATGG	1 cut(s)	201
NdeII	GATC	2 cut(s)	664, 907
NlaIII	CATG	5 cut(s)	205, 295, 556, 595, 647
NlaIV	GGNNCC	1 cut(s)	163
NmuCI	GTSAC	1 cut(s)	404
NspI	RCATGY	1 cut(s)	595
PctI	GAATGC	1 cut(s)	463
PdmI	GAANNNNTTC	3 cut(s)	8, 273, 820
PfeI	GAWTC	4 cut(s)	296, 443, 729, 959
PkrI	GCNGC	5 cut(s)	226, 427, 741, 772, 777
PleI	GAGTC	2 cut(s)	545, 718
PluTI	GGCGCC	1 cut(s)	165
PpsI	GAGTC	2 cut(s)	545, 718
Psp124BI	GAGCTC	1 cut(s)	801
PspN4I	GGNNCC	1 cut(s)	163
PspPI	GGNCC	4 cut(s)	18, 622, 890, 1093
PstI	CTGCAG	2 cut(s)	430, 772
PstNI	CAGNNNCTG	1 cut(s)	905
RseI	CAYNNNNRTG	1 cut(s)	344
SacI	GAGCTC	1 cut(s)	801
SaqAI	TTAA	2 cut(s)	504, 812
SatI	GCNGC	5 cut(s)	225, 426, 740, 771, 776
Sau3AI	GATC	2 cut(s)	664, 907
Sau96I	GGNCC	4 cut(s)	18, 622, 890, 1093
SchI	GAGTC	2 cut(s)	546, 719
SduI	GDGCHC	2 cut(s)	643, 801
SfaNI	GCATC	2 cut(s)	886, 963
SfcI	CTRYAG	2 cut(s)	426, 768
SfoI	GGCGCC	1 cut(s)	163
SinI	GGWCC	4 cut(s)	18, 622, 890, 1093
SmiMI	CAYNNNNRTG	1 cut(s)	344
Sse9I	AATT	9 cut(s)	189, 252, 486, 497, 529, 562, 569, 610, 864
SspDI	GGCGCC	1 cut(s)	161
SspI	AATATT	1 cut(s)	580
SspMI	CTAG	1 cut(s)	534
SstI	GAGCTC	1 cut(s)	801
StyI	CCWWGG	1 cut(s)	201
TaaI	ACNGT	5 cut(s)	22, 34, 126, 410, 857
TaqI	TCGA	2 cut(s)	957, 1036
TasI	AATT	9 cut(s)	189, 252, 486, 497, 529, 562, 569, 610, 864
TfiI	GAWTC	4 cut(s)	296, 443, 729, 959
Tru1I	TTAA	2 cut(s)	504, 812
Tru9I	TTAA	2 cut(s)	504, 812
TscAI	CASTG	3 cut(s)	226, 643, 661
TseFI	GTSAC	1 cut(s)	404
TseI	GCWGC	5 cut(s)	224, 425, 739, 770, 775
Tsp45I	GTSAC	1 cut(s)	404
TspDTI	ATGAA	3 cut(s)	17, 435, 861
TspGWI	ACGGA	2 cut(s)	65, 722
TspRI	CASTG	3 cut(s)	226, 643, 661
VpaK11BI	GGWCC	4 cut(s)	18, 622, 890, 1093
XapI	RAATTY	5 cut(s)	189, 252, 497, 562, 610
XbaI	TCTAGA	1 cut(s)	533
XceI	RCATGY	1 cut(s)	595
XmiI	GTMKAC	1 cut(s)	336
XmnI	GAANNNNTTC	3 cut(s)	8, 273, 820
XspI	CTAG	1 cut(s)	534

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.