Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0039118.1

Orthogroup ID

OG0003937

Physical Location & Seq

Genomic Coordinates Forward (+)

284 .. 2599

Gene Structure 2316 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0039118.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 591 bp

atgggggcagttcagaataattctagagtcctttatagtggcatggatacaaatttgaaattgttgaatattggggtaaacatgcctgaaacccatccgaattcgggactggacctgaatgtatccagtgctcatgccatacacactgaggaagatcacgactggagaagaagagaaaagagaaagcagtctaatagggagtcagctaagaggtcaagattccgtaggcagcaagaatgtgagaaactacgagaaactgcagcgctgctgaatagtgaaatctcggagctcccaaatgagttaagaaggctttctgaggagtgtgggaaacttgatgaagaaaacagttccctaattgatgagatggagaagatgtatggtccagatgcagttgctgatctcagagctgtgaaagtcaactcttccgatgatggaagcaacagcatcgaatcaaaaactccaagcagagacaactcaacttctcctactcctcatcaaaaagagacttctcctactcctgagcctcgattatttggtgtcagcctacgaccaaacttggctgattgtttacatagttcaaaggtccagtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MFMR MFMR_assoc bZIP_1

Protein Analysis

196

Amino Acids

22.05

Weight (kDa)

5.91

Isoelectric Point (pI)

74.96

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003937)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g08260 FvH4_2g08260 FvH4_2g08260 FvH4_2g08260
malus_domestica	MD10G1080800.v1.1
prunus_persica	Prupe.8G102100_v2.0.a1 Prupe.8G102100_v2.0.a1 Prupe.8G102100_v2.0.a1 Prupe.8G102100_v2.0.a1 Prupe.8G102100_v2.0.a1 Prupe.8G102100_v2.0.a1 Prupe.8G102100_v2.0.a1 Prupe.8G102100_v2.0.a1 Prupe.8G102100_v2.0.a1 Prupe.8G102100_v2.0.a1 Prupe.8G102100_v2.0.a1 Prupe.8G102100_v2.0.a1 Prupe.8G102100_v2.0.a1 Prupe.8G102100_v2.0.a1 Prupe.8G102100_v2.0.a1 Prupe.8G102100_v2.0.a1
pyrus_communis	pycom10g06400
rosa_chinensis	RchiOBHm_Chr6g0263141
rosa_laevigata	RLG00000014369
rosa_multiflora	Rmu_sc0015149.1_g000003 Rmu_sc0039118.1_g000001
rosa_roxburghii	Rroxscaffold_176G00430940 Rroxscaffold_7G00204630
rosa_rugosa	Rorug06G0003800
rosa_samantha	Rh6AG122900 Rh6BG117900 Rh6CG116100 Rh6DG104600
rosa_wichuraiana	Rw6G010560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	2 cut(s)	52, 100
AfeI	AGCGCT	1 cut(s)	264
AfiI	CCNNNNNNNGG	1 cut(s)	104
AgsI	TTSAA	3 cut(s)	58, 67, 579
AluBI	AGCT	3 cut(s)	206, 289, 407
AluI	AGCT	3 cut(s)	206, 289, 407
Alw21I	GWGCWC	2 cut(s)	133, 291
Alw26I	GTCTC	2 cut(s)	462, 497
AlwNI	CAGNNNCTG	1 cut(s)	395
Aor51HI	AGCGCT	1 cut(s)	264
ApeKI	GCWGC	3 cut(s)	229, 260, 265
ApoI	RAATTY	2 cut(s)	52, 100
Asp700I	GAANNNNTTC	1 cut(s)	310
AspLEI	GCGC	1 cut(s)	265
AspS9I	GGNCC	3 cut(s)	112, 380, 583
AvaII	GGWCC	3 cut(s)	112, 380, 583
BanII	GRGCYC	1 cut(s)	291
Bbv12I	GWGCWC	2 cut(s)	133, 291
BbvI	GCAGC	3 cut(s)	241, 252, 272
BccI	CCATC	3 cut(s)	102, 358, 425
BcgI	CGANNNNNNTGC	2 cut(s)	427, 461
BciVI	GTATCC	2 cut(s)	40, 133
BcoDI	GTCTC	2 cut(s)	462, 497
BfaI	CTAG	1 cut(s)	24
BfmI	CTRYAG	1 cut(s)	258
BfoI	RGCGCY	1 cut(s)	266
BfuI	GTATCC	2 cut(s)	40, 133
BisI	GCNGC	3 cut(s)	230, 261, 266
BlsI	GCNGC	3 cut(s)	231, 262, 267
Bme18I	GGWCC	3 cut(s)	112, 380, 583
BmgT120I	GGNCC	3 cut(s)	112, 380, 583
BmsI	GCATC	2 cut(s)	376, 453
BpmI	CTGGAG	1 cut(s)	184
Bpu10I	CCTNAGC	1 cut(s)	519
BsaXI	ACNNNNNCTCC	2 cut(s)	359, 389
Bsc4I	CCNNNNNNNGG	1 cut(s)	104
Bse1I	ACTGG	4 cut(s)	114, 126, 167, 586
BseGI	GGATG	1 cut(s)	94
BseLI	CCNNNNNNNGG	1 cut(s)	104
BseMII	CTCAG	4 cut(s)	138, 306, 415, 510
BseNI	ACTGG	4 cut(s)	114, 126, 167, 586
BseRI	GAGGAG	2 cut(s)	332, 480
BseXI	GCAGC	3 cut(s)	241, 252, 272
BsiHKAI	GWGCWC	2 cut(s)	133, 291
BslFI	GGGAC	1 cut(s)	120
BslI	CCNNNNNNNGG	1 cut(s)	104
BsmAI	GTCTC	2 cut(s)	462, 497
BsmFI	GGGAC	1 cut(s)	120
Bsp1286I	GDGCHC	2 cut(s)	133, 291
Bsp143I	GATC	2 cut(s)	154, 397
BspCNI	CTCAG	4 cut(s)	139, 307, 414, 511
BspMAI	CTGCAG	1 cut(s)	262
BsrI	ACTGG	4 cut(s)	114, 126, 167, 586
BssMI	GATC	2 cut(s)	154, 397
Bst4CI	ACNGT	1 cut(s)	347
Bst6I	CTCTTC	2 cut(s)	166, 427
BstDEI	CTNAG	5 cut(s)	147, 207, 315, 401, 519
BstF5I	GGATG	1 cut(s)	94
BstH2I	RGCGCY	1 cut(s)	266
BstHHI	GCGC	1 cut(s)	265
BstKTI	GATC	2 cut(s)	157, 400
BstMAI	GTCTC	2 cut(s)	462, 497
BstMBI	GATC	2 cut(s)	154, 397
BstNSI	RCATGY	1 cut(s)	85
BstSFI	CTRYAG	1 cut(s)	258
BstV1I	GCAGC	3 cut(s)	241, 252, 272
BsuI	GTATCC	2 cut(s)	40, 133
BtsCI	GGATG	1 cut(s)	94
BtsIMutI	CAGTG	2 cut(s)	133, 144
CaiI	CAGNNNCTG	1 cut(s)	395
CfoI	GCGC	1 cut(s)	265
Cfr13I	GGNCC	3 cut(s)	112, 380, 583
CviAII	CATG	3 cut(s)	43, 82, 134
CviJI	RGCY	7 cut(s)	206, 289, 310, 407, 523, 543, 560
CviKI_1	RGCY	7 cut(s)	206, 289, 310, 407, 523, 543, 560
DdeI	CTNAG	5 cut(s)	147, 207, 315, 401, 519
DpnI	GATC	2 cut(s)	156, 399
DpnII	GATC	2 cut(s)	154, 397
Eam1104I	CTCTTC	2 cut(s)	166, 427
EarI	CTCTTC	2 cut(s)	166, 427
Ecl136II	GAGCTC	1 cut(s)	289
Eco24I	GRGCYC	1 cut(s)	291
Eco47I	GGWCC	3 cut(s)	112, 380, 583
Eco47III	AGCGCT	1 cut(s)	264
Eco53kI	GAGCTC	1 cut(s)	289
EcoICRI	GAGCTC	1 cut(s)	289
EcoRI	GAATTC	1 cut(s)	100
EcoT38I	GRGCYC	1 cut(s)	291
FaeI	CATG	3 cut(s)	46, 85, 137
FaiI	YATR	7 cut(s)	36, 44, 83, 135, 140, 378, 573
FaqI	GGGAC	1 cut(s)	120
FatI	CATG	3 cut(s)	42, 81, 133
Fnu4HI	GCNGC	3 cut(s)	230, 261, 266
FokI	GGATG	1 cut(s)	81
FriOI	GRGCYC	1 cut(s)	291
Fsp4HI	GCNGC	3 cut(s)	230, 261, 266
FspBI	CTAG	1 cut(s)	24
GlaI	GCGC	1 cut(s)	264
GluI	GCNGC	3 cut(s)	230, 261, 266
GsuI	CTGGAG	1 cut(s)	184
HaeII	RGCGCY	1 cut(s)	266
HhaI	GCGC	1 cut(s)	265
Hin1II	CATG	3 cut(s)	46, 85, 137
Hin6I	GCGC	1 cut(s)	263
HinP1I	GCGC	1 cut(s)	263
HincII	GTYRAC	1 cut(s)	418
HindII	GTYRAC	1 cut(s)	418
HinfI	GANTC	4 cut(s)	27, 200, 219, 449
Hpy166II	GTNNAC	3 cut(s)	79, 418, 569
Hpy188I	TCNGA	6 cut(s)	15, 99, 286, 316, 404, 427
Hpy188III	TCNNGA	6 cut(s)	24, 105, 158, 216, 383, 518
Hpy8I	GTNNAC	3 cut(s)	79, 418, 569
HpyAV	CCTTC	1 cut(s)	300
HpyCH4III	ACNGT	1 cut(s)	347
HpyCH4V	TGCA	2 cut(s)	260, 389
HpyF3I	CTNAG	5 cut(s)	147, 207, 315, 401, 519
Hsp92II	CATG	3 cut(s)	46, 85, 137
HspAI	GCGC	1 cut(s)	263
Kzo9I	GATC	2 cut(s)	154, 397
LmnI	GCTCC	2 cut(s)	286, 294
LpnPI	CCDG	7 cut(s)	95, 99, 128, 139, 148, 396, 531
Lsp1109I	GCAGC	3 cut(s)	241, 252, 272
LweI	GCATC	2 cut(s)	376, 453
MaeI	CTAG	1 cut(s)	24
MalI	GATC	2 cut(s)	156, 399
MboI	GATC	2 cut(s)	154, 397
MboII	GAAGA	6 cut(s)	164, 180, 183, 350, 382, 414
MhlI	GDGCHC	2 cut(s)	133, 291
MluCI	AATT	5 cut(s)	19, 52, 59, 100, 354
MlyI	GAGTC	2 cut(s)	36, 209
MnlI	CCTC	5 cut(s)	142, 204, 310, 501, 534
MroXI	GAANNNNTTC	1 cut(s)	310
MseI	TTAA	1 cut(s)	302
NdeII	GATC	2 cut(s)	154, 397
NlaIII	CATG	3 cut(s)	46, 85, 137
NspI	RCATGY	1 cut(s)	85
PdmI	GAANNNNTTC	1 cut(s)	310
PfeI	GAWTC	2 cut(s)	219, 449
PkrI	GCNGC	3 cut(s)	231, 262, 267
PleI	GAGTC	2 cut(s)	35, 208
PpsI	GAGTC	2 cut(s)	35, 208
Psp124BI	GAGCTC	1 cut(s)	291
PspPI	GGNCC	3 cut(s)	112, 380, 583
PstI	CTGCAG	1 cut(s)	262
PstNI	CAGNNNCTG	1 cut(s)	395
SacI	GAGCTC	1 cut(s)	291
SaqAI	TTAA	1 cut(s)	302
SatI	GCNGC	3 cut(s)	230, 261, 266
Sau3AI	GATC	2 cut(s)	154, 397
Sau96I	GGNCC	3 cut(s)	112, 380, 583
SchI	GAGTC	2 cut(s)	36, 209
SduI	GDGCHC	2 cut(s)	133, 291
SetI	ASST	6 cut(s)	117, 208, 215, 291, 409, 585
SfaNI	GCATC	2 cut(s)	376, 453
SfcI	CTRYAG	1 cut(s)	258
SinI	GGWCC	3 cut(s)	112, 380, 583
Sse9I	AATT	5 cut(s)	19, 52, 59, 100, 354
SspI	AATATT	1 cut(s)	70
SspMI	CTAG	1 cut(s)	24
SstI	GAGCTC	1 cut(s)	291
TaaI	ACNGT	1 cut(s)	347
TaqI	TCGA	2 cut(s)	447, 526
TasI	AATT	5 cut(s)	19, 52, 59, 100, 354
TfiI	GAWTC	2 cut(s)	219, 449
Tru1I	TTAA	1 cut(s)	302
Tru9I	TTAA	1 cut(s)	302
TscAI	CASTG	2 cut(s)	133, 151
TseI	GCWGC	3 cut(s)	229, 260, 265
TspDTI	ATGAA	1 cut(s)	351
TspGWI	ACGGA	1 cut(s)	212
TspRI	CASTG	2 cut(s)	133, 151
VpaK11BI	GGWCC	3 cut(s)	112, 380, 583
XapI	RAATTY	2 cut(s)	52, 100
XbaI	TCTAGA	1 cut(s)	23
XceI	RCATGY	1 cut(s)	85
XmnI	GAANNNNTTC	1 cut(s)	310
XspI	CTAG	1 cut(s)	24

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.