Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0015149.1

Orthogroup ID

OG0003937

Physical Location & Seq

Genomic Coordinates Reverse (-)

9517 .. 12692

Gene Structure 3176 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0015149.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 900 bp

atggagaacaaggaaaccagtgctgcttcaactcagggtgtggcattagaaattcaagataaagaagaaagggttctcaatgagaaggacatggaatcaatgacgccaatgacaacaactaaggaaggctcagtagacattgaggtggtaggcaatagagttgcagatagcgaaaaggaaacttctttttctggaaatagtggtgacggtgtttcacagggtgctgcaggcagaggcgaggattcatcagatgagaatgctgacactaaccgagatttttctgcaattcaaaagcaaatttttaaccagatgggggcagttcagaataattctagagtcctttatagtggcatggatacaaatttgaaattgttgaatattgggataaacatgcctgaaacccatccgaattcgggactggacctgaatgtatccagtgctcatgccatactcacagaggaagatcacgactggagaagaagagaaaagagaaagcagtctaatagggagtcagctaagaggtcaagattccgtaggcagcaagaatgtgagaaactacgagaaactgcagcgatgctgaatagtgaaatctcagagctcccaaatgagttaagaaggctttctgaggagtgtgggaaacttgatgaagaaaacagttccctaattgatgagatggagaagatgtatggtccagatgcagttgctgatctcagagctgtgaaagtcaactcttccgatgatggaagcaacagcatcgaatcaaaaactccaagcagagacaactcaacttctcctactcctcatcaaaaagagacttctcctactcctgagcctcgattatttggtgtcagcctacgaccaaacttggctgattgtttacatagttcaaaggtccagtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MFMR MFMR_assoc bZIP_1

Protein Analysis

299

Amino Acids

33.11

Weight (kDa)

4.89

Isoelectric Point (pI)

57.49

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003937)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g08260 FvH4_2g08260 FvH4_2g08260 FvH4_2g08260
malus_domestica	MD10G1080800.v1.1
prunus_persica	Prupe.8G102100_v2.0.a1 Prupe.8G102100_v2.0.a1 Prupe.8G102100_v2.0.a1 Prupe.8G102100_v2.0.a1 Prupe.8G102100_v2.0.a1 Prupe.8G102100_v2.0.a1 Prupe.8G102100_v2.0.a1 Prupe.8G102100_v2.0.a1 Prupe.8G102100_v2.0.a1 Prupe.8G102100_v2.0.a1 Prupe.8G102100_v2.0.a1 Prupe.8G102100_v2.0.a1 Prupe.8G102100_v2.0.a1 Prupe.8G102100_v2.0.a1 Prupe.8G102100_v2.0.a1 Prupe.8G102100_v2.0.a1
pyrus_communis	pycom10g06400
rosa_chinensis	RchiOBHm_Chr6g0263141
rosa_laevigata	RLG00000014369
rosa_multiflora	Rmu_sc0015149.1_g000003 Rmu_sc0039118.1_g000001
rosa_roxburghii	Rroxscaffold_176G00430940 Rroxscaffold_7G00204630
rosa_rugosa	Rorug06G0003800
rosa_samantha	Rh6AG122900 Rh6BG117900 Rh6CG116100 Rh6DG104600
rosa_wichuraiana	Rw6G010560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	135
AcsI	RAATTY	4 cut(s)	51, 297, 361, 409
AcyI	GRCGYC	1 cut(s)	104
AdeI	CACNNNGTG	1 cut(s)	221
AfiI	CCNNNNNNNGG	2 cut(s)	313, 413
AgsI	TTSAA	6 cut(s)	30, 56, 290, 367, 376, 888
AluBI	AGCT	3 cut(s)	515, 598, 716
AluI	AGCT	3 cut(s)	515, 598, 716
Alw21I	GWGCWC	2 cut(s)	442, 600
Alw26I	GTCTC	2 cut(s)	771, 806
AlwNI	CAGNNNCTG	1 cut(s)	704
ApeKI	GCWGC	4 cut(s)	23, 224, 538, 569
ApoI	RAATTY	4 cut(s)	51, 297, 361, 409
Asp700I	GAANNNNTTC	2 cut(s)	72, 619
AspS9I	GGNCC	3 cut(s)	421, 689, 892
AsuHPI	GGTGA	1 cut(s)	215
AvaII	GGWCC	3 cut(s)	421, 689, 892
BanII	GRGCYC	1 cut(s)	600
Bbv12I	GWGCWC	2 cut(s)	442, 600
BbvI	GCAGC	4 cut(s)	10, 211, 550, 581
BccI	CCATC	4 cut(s)	304, 411, 667, 734
BcgI	CGANNNNNNTGC	2 cut(s)	736, 770
BciVI	GTATCC	2 cut(s)	349, 442
BcoDI	GTCTC	2 cut(s)	771, 806
BfaI	CTAG	1 cut(s)	333
BfmI	CTRYAG	2 cut(s)	225, 567
BfuI	GTATCC	2 cut(s)	349, 442
BisI	GCNGC	4 cut(s)	24, 225, 539, 570
BlsI	GCNGC	4 cut(s)	25, 226, 540, 571
Bme18I	GGWCC	3 cut(s)	421, 689, 892
BmgT120I	GGNCC	3 cut(s)	421, 689, 892
BmsI	GCATC	3 cut(s)	564, 685, 762
BpmI	CTGGAG	1 cut(s)	493
Bpu10I	CCTNAGC	1 cut(s)	828
BsaHI	GRCGYC	1 cut(s)	104
BsaXI	ACNNNNNCTCC	2 cut(s)	668, 698
Bsc4I	CCNNNNNNNGG	2 cut(s)	313, 413
Bse1I	ACTGG	5 cut(s)	18, 423, 435, 476, 895
BseGI	GGATG	1 cut(s)	403
BseLI	CCNNNNNNNGG	2 cut(s)	313, 413
BseMII	CTCAG	6 cut(s)	47, 144, 606, 615, 724, 819
BseNI	ACTGG	5 cut(s)	18, 423, 435, 476, 895
BseRI	GAGGAG	2 cut(s)	641, 789
BseXI	GCAGC	4 cut(s)	10, 211, 550, 581
BsiHKAI	GWGCWC	2 cut(s)	442, 600
BslFI	GGGAC	1 cut(s)	429
BslI	CCNNNNNNNGG	2 cut(s)	313, 413
BsmAI	GTCTC	2 cut(s)	771, 806
BsmFI	GGGAC	1 cut(s)	429
BsmI	GAATGC	1 cut(s)	262
Bsp1286I	GDGCHC	2 cut(s)	442, 600
Bsp143I	GATC	2 cut(s)	463, 706
BspCNI	CTCAG	6 cut(s)	46, 143, 605, 616, 723, 820
BspMAI	CTGCAG	2 cut(s)	229, 571
BsrI	ACTGG	5 cut(s)	18, 423, 435, 476, 895
BssMI	GATC	2 cut(s)	463, 706
BssNI	GRCGYC	1 cut(s)	104
Bst4CI	ACNGT	2 cut(s)	209, 656
Bst6I	CTCTTC	2 cut(s)	475, 736
BstACI	GRCGYC	1 cut(s)	104
BstC8I	GCNNGC	1 cut(s)	229
BstDEI	CTNAG	8 cut(s)	33, 120, 130, 516, 592, 624, 710, 828
BstF5I	GGATG	1 cut(s)	403
BstKTI	GATC	2 cut(s)	466, 709
BstMAI	GTCTC	2 cut(s)	771, 806
BstMBI	GATC	2 cut(s)	463, 706
BstNSI	RCATGY	1 cut(s)	394
BstSFI	CTRYAG	2 cut(s)	225, 567
BstV1I	GCAGC	4 cut(s)	10, 211, 550, 581
BsuI	GTATCC	2 cut(s)	349, 442
BtgZI	GCGATG	1 cut(s)	587
BtsCI	GGATG	1 cut(s)	403
BtsIMutI	CAGTG	2 cut(s)	25, 442
Cac8I	GCNNGC	1 cut(s)	229
CaiI	CAGNNNCTG	1 cut(s)	704
Cfr13I	GGNCC	3 cut(s)	421, 689, 892
CseI	GACGC	1 cut(s)	112
CviAII	CATG	4 cut(s)	91, 352, 391, 443
CviJI	RGCY	8 cut(s)	129, 515, 598, 619, 716, 832, 852, 869
CviKI_1	RGCY	8 cut(s)	129, 515, 598, 619, 716, 832, 852, 869
DdeI	CTNAG	8 cut(s)	33, 120, 130, 516, 592, 624, 710, 828
DpnI	GATC	2 cut(s)	465, 708
DpnII	GATC	2 cut(s)	463, 706
DraIII	CACNNNGTG	1 cut(s)	221
Eam1104I	CTCTTC	2 cut(s)	475, 736
EarI	CTCTTC	2 cut(s)	475, 736
Ecl136II	GAGCTC	1 cut(s)	598
Eco24I	GRGCYC	1 cut(s)	600
Eco47I	GGWCC	3 cut(s)	421, 689, 892
Eco53kI	GAGCTC	1 cut(s)	598
EcoICRI	GAGCTC	1 cut(s)	598
EcoRI	GAATTC	1 cut(s)	409
EcoT38I	GRGCYC	1 cut(s)	600
FaeI	CATG	4 cut(s)	94, 355, 394, 446
FaiI	YATR	8 cut(s)	92, 345, 353, 392, 444, 449, 687, 882
FaqI	GGGAC	1 cut(s)	429
FatI	CATG	4 cut(s)	90, 351, 390, 442
FblI	GTMKAC	1 cut(s)	135
Fnu4HI	GCNGC	4 cut(s)	24, 225, 539, 570
FokI	GGATG	1 cut(s)	390
FriOI	GRGCYC	1 cut(s)	600
Fsp4HI	GCNGC	4 cut(s)	24, 225, 539, 570
FspBI	CTAG	1 cut(s)	333
GluI	GCNGC	4 cut(s)	24, 225, 539, 570
GsuI	CTGGAG	1 cut(s)	493
HgaI	GACGC	1 cut(s)	112
Hin1I	GRCGYC	1 cut(s)	104
Hin1II	CATG	4 cut(s)	94, 355, 394, 446
HincII	GTYRAC	1 cut(s)	727
HindII	GTYRAC	1 cut(s)	727
HinfI	GANTC	6 cut(s)	95, 242, 336, 509, 528, 758
HphI	GGTGA	1 cut(s)	215
Hpy166II	GTNNAC	3 cut(s)	136, 727, 878
Hpy188I	TCNGA	7 cut(s)	250, 324, 408, 595, 625, 713, 736
Hpy188III	TCNNGA	8 cut(s)	56, 192, 333, 414, 467, 525, 692, 827
Hpy8I	GTNNAC	3 cut(s)	136, 727, 878
HpyAV	CCTTC	3 cut(s)	79, 119, 609
HpyCH4III	ACNGT	2 cut(s)	209, 656
HpyCH4V	TGCA	5 cut(s)	164, 227, 284, 569, 698
HpyF3I	CTNAG	8 cut(s)	33, 120, 130, 516, 592, 624, 710, 828
Hsp92I	GRCGYC	1 cut(s)	104
Hsp92II	CATG	4 cut(s)	94, 355, 394, 446
Kzo9I	GATC	2 cut(s)	463, 706
LmnI	GCTCC	1 cut(s)	603
Lsp1109I	GCAGC	4 cut(s)	10, 211, 550, 581
LweI	GCATC	3 cut(s)	564, 685, 762
MaeI	CTAG	1 cut(s)	333
MaeIII	GTNAC	1 cut(s)	203
MalI	GATC	2 cut(s)	465, 708
MboI	GATC	2 cut(s)	463, 706
MboII	GAAGA	7 cut(s)	77, 473, 489, 492, 659, 691, 723
MhlI	GDGCHC	2 cut(s)	442, 600
MluCI	AATT	8 cut(s)	51, 285, 297, 328, 361, 368, 409, 663
MlyI	GAGTC	2 cut(s)	345, 518
MnlI	CCTC	8 cut(s)	136, 227, 232, 451, 513, 619, 810, 843
MroXI	GAANNNNTTC	2 cut(s)	72, 619
MseI	TTAA	2 cut(s)	303, 611
MslI	CAYNNNNRTG	1 cut(s)	143
Mva1269I	GAATGC	1 cut(s)	262
NdeII	GATC	2 cut(s)	463, 706
NlaIII	CATG	4 cut(s)	94, 355, 394, 446
NmuCI	GTSAC	1 cut(s)	203
NspI	RCATGY	1 cut(s)	394
PctI	GAATGC	1 cut(s)	262
PdmI	GAANNNNTTC	2 cut(s)	72, 619
PfeI	GAWTC	4 cut(s)	95, 242, 528, 758
PkrI	GCNGC	4 cut(s)	25, 226, 540, 571
PleI	GAGTC	2 cut(s)	344, 517
PpsI	GAGTC	2 cut(s)	344, 517
Psp124BI	GAGCTC	1 cut(s)	600
PspPI	GGNCC	3 cut(s)	421, 689, 892
PstI	CTGCAG	2 cut(s)	229, 571
PstNI	CAGNNNCTG	1 cut(s)	704
RseI	CAYNNNNRTG	1 cut(s)	143
SacI	GAGCTC	1 cut(s)	600
SaqAI	TTAA	2 cut(s)	303, 611
SatI	GCNGC	4 cut(s)	24, 225, 539, 570
Sau3AI	GATC	2 cut(s)	463, 706
Sau96I	GGNCC	3 cut(s)	421, 689, 892
SchI	GAGTC	2 cut(s)	345, 518
SduI	GDGCHC	2 cut(s)	442, 600
SetI	ASST	7 cut(s)	147, 426, 517, 524, 600, 718, 894
SfaNI	GCATC	3 cut(s)	564, 685, 762
SfcI	CTRYAG	2 cut(s)	225, 567
SinI	GGWCC	3 cut(s)	421, 689, 892
SmiMI	CAYNNNNRTG	1 cut(s)	143
Sse9I	AATT	8 cut(s)	51, 285, 297, 328, 361, 368, 409, 663
SspI	AATATT	1 cut(s)	379
SspMI	CTAG	1 cut(s)	333
SstI	GAGCTC	1 cut(s)	600
TaaI	ACNGT	2 cut(s)	209, 656
TaqI	TCGA	2 cut(s)	756, 835
TasI	AATT	8 cut(s)	51, 285, 297, 328, 361, 368, 409, 663
TfiI	GAWTC	4 cut(s)	95, 242, 528, 758
Tru1I	TTAA	2 cut(s)	303, 611
Tru9I	TTAA	2 cut(s)	303, 611
TscAI	CASTG	2 cut(s)	25, 442
TseFI	GTSAC	1 cut(s)	203
TseI	GCWGC	4 cut(s)	23, 224, 538, 569
Tsp45I	GTSAC	1 cut(s)	203
TspDTI	ATGAA	2 cut(s)	234, 660
TspGWI	ACGGA	1 cut(s)	521
TspRI	CASTG	2 cut(s)	25, 442
VpaK11BI	GGWCC	3 cut(s)	421, 689, 892
XapI	RAATTY	4 cut(s)	51, 297, 361, 409
XbaI	TCTAGA	1 cut(s)	332
XceI	RCATGY	1 cut(s)	394
XmiI	GTMKAC	1 cut(s)	135
XmnI	GAANNNNTTC	2 cut(s)	72, 619
XspI	CTAG	1 cut(s)	333

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.