Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000176

Orthogroup ID

OG0003937

Physical Location & Seq

Genomic Coordinates Forward (+)

35304 .. 39765

Gene Structure 4462 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_176G00430940.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 888 bp

ATGCTAGTGAGATGCAAATCAGAGGGTGTGGCATTAGAAATTCAAGATAAAGAAGAAAGGGTTCTCAATGAGAAGGACATGGAATCAATGACGCCAATGACAACAACTAAGGAAGGCTCAGTAGACATTGAGGTGGTAGGCAATAGAGTTGCAGATAGCGAAAAGGAAACTTCTTTTTCTGGAAATAGTGGTGACGGTGTTTCACAGGGTGCTGCAGGCAGAGGTGAGGATTCATCAGATGAGAATGCTGACACTAACCGAGATTTTTCTGCAATTCAAAAGAAATTTTTTAACCAGATGGGGGCAGTTCAGAATAATTCTAGAGTCATTTATAGTGGCATGGATACAAATTTGAAATTGTTGAATATTGGGGTAAACATGCCTGAAACCCATCCGAATTCGGGACTGGACCTGAATGTATCCAGTGCTCATGCCATACACACTGAGGAAGATCACGACTGGAGAAGAAGAGAAAAGAGAAAGCAGTCTAATAGGGAGTCAGCTAAGAGGTCAAGATTCCGTAGGCAGCAAGAATGTGAGAAACTACGAGAAACTGCAGCGCTGCTGAATAGTGAAATCTCGGAGCTCCCAAATGAGTTAAGAAGGCTTTCTGAGGAGTGTGGGAAACTTGATGAAGAAAACAGTTCCCTAATTGATGAGATGGAGAAGATGTATGGTCCAGATGCAGTTGCTGATCTCAGAGCTGTGAAAGTCAACTCTTCCGATGATGGAAGCAACAGCATCGAATCAAAAACTCCAAGCAGAGACAACTCAACTTCTCCTACTCCTCATCAAAAAGAGACTTCTCCTACTCCTGAGCCTCGATTATTTGGTGTCAGCCTACGACCAAACTTGGCTGATTGTTTACATAGTTCAAAGGTCCAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MFMR MFMR_assoc bZIP_1

Protein Analysis

295

Amino Acids

32.8

Weight (kDa)

5.09

Isoelectric Point (pI)

57.24

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
bZIP_1	PF00170	156 - 214	7e-12	bZIP transcription factor

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003937)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g08260 FvH4_2g08260 FvH4_2g08260 FvH4_2g08260
malus_domestica	MD10G1080800.v1.1
prunus_persica	Prupe.8G102100_v2.0.a1 Prupe.8G102100_v2.0.a1 Prupe.8G102100_v2.0.a1 Prupe.8G102100_v2.0.a1 Prupe.8G102100_v2.0.a1 Prupe.8G102100_v2.0.a1 Prupe.8G102100_v2.0.a1 Prupe.8G102100_v2.0.a1 Prupe.8G102100_v2.0.a1 Prupe.8G102100_v2.0.a1 Prupe.8G102100_v2.0.a1 Prupe.8G102100_v2.0.a1 Prupe.8G102100_v2.0.a1 Prupe.8G102100_v2.0.a1 Prupe.8G102100_v2.0.a1 Prupe.8G102100_v2.0.a1
pyrus_communis	pycom10g06400
rosa_chinensis	RchiOBHm_Chr6g0263141
rosa_laevigata	RLG00000014369
rosa_multiflora	Rmu_sc0015149.1_g000003 Rmu_sc0039118.1_g000001
rosa_roxburghii	Rroxscaffold_176G00430940 Rroxscaffold_7G00204630
rosa_rugosa	Rorug06G0003800
rosa_samantha	Rh6AG122900 Rh6BG117900 Rh6CG116100 Rh6DG104600
rosa_wichuraiana	Rw6G010560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	123
AcsI	RAATTY	4 cut(s)	39, 284, 349, 397
AcyI	GRCGYC	1 cut(s)	92
AdeI	CACNNNGTG	1 cut(s)	209
AfeI	AGCGCT	1 cut(s)	561
AfiI	CCNNNNNNNGG	2 cut(s)	301, 401
AgsI	TTSAA	5 cut(s)	44, 278, 355, 364, 876
AluBI	AGCT	3 cut(s)	503, 586, 704
AluI	AGCT	3 cut(s)	503, 586, 704
Alw21I	GWGCWC	2 cut(s)	430, 588
Alw26I	GTCTC	2 cut(s)	759, 794
AlwNI	CAGNNNCTG	1 cut(s)	692
Aor51HI	AGCGCT	1 cut(s)	561
ApeKI	GCWGC	4 cut(s)	212, 526, 557, 562
ApoI	RAATTY	4 cut(s)	39, 284, 349, 397
Asp700I	GAANNNNTTC	2 cut(s)	60, 607
AspLEI	GCGC	1 cut(s)	562
AspS9I	GGNCC	3 cut(s)	409, 677, 880
AsuHPI	GGTGA	2 cut(s)	203, 236
AvaII	GGWCC	3 cut(s)	409, 677, 880
BanII	GRGCYC	1 cut(s)	588
Bbv12I	GWGCWC	2 cut(s)	430, 588
BbvI	GCAGC	4 cut(s)	199, 538, 549, 569
BccI	CCATC	4 cut(s)	292, 399, 655, 722
BcgI	CGANNNNNNTGC	2 cut(s)	724, 758
BciVI	GTATCC	2 cut(s)	337, 430
BcoDI	GTCTC	2 cut(s)	759, 794
BfaI	CTAG	2 cut(s)	5, 321
BfmI	CTRYAG	2 cut(s)	213, 555
BfoI	RGCGCY	1 cut(s)	563
BfuI	GTATCC	2 cut(s)	337, 430
BisI	GCNGC	4 cut(s)	213, 527, 558, 563
BlsI	GCNGC	4 cut(s)	214, 528, 559, 564
Bme18I	GGWCC	3 cut(s)	409, 677, 880
BmgT120I	GGNCC	3 cut(s)	409, 677, 880
BmsI	GCATC	3 cut(s)	2, 673, 750
BpmI	CTGGAG	1 cut(s)	481
Bpu10I	CCTNAGC	1 cut(s)	816
BsaBI	GATNNNNATC	1 cut(s)	16
BsaHI	GRCGYC	1 cut(s)	92
BsaXI	ACNNNNNCTCC	2 cut(s)	656, 686
Bsc4I	CCNNNNNNNGG	2 cut(s)	301, 401
Bse1I	ACTGG	4 cut(s)	411, 423, 464, 883
Bse8I	GATNNNNATC	1 cut(s)	16
BseGI	GGATG	1 cut(s)	391
BseJI	GATNNNNATC	1 cut(s)	16
BseLI	CCNNNNNNNGG	2 cut(s)	301, 401
BseMII	CTCAG	5 cut(s)	132, 435, 603, 712, 807
BseNI	ACTGG	4 cut(s)	411, 423, 464, 883
BseRI	GAGGAG	2 cut(s)	629, 777
BseXI	GCAGC	4 cut(s)	199, 538, 549, 569
BsiHKAI	GWGCWC	2 cut(s)	430, 588
BslFI	GGGAC	1 cut(s)	417
BslI	CCNNNNNNNGG	2 cut(s)	301, 401
BsmAI	GTCTC	2 cut(s)	759, 794
BsmFI	GGGAC	1 cut(s)	417
BsmI	GAATGC	1 cut(s)	250
Bsp1286I	GDGCHC	2 cut(s)	430, 588
Bsp143I	GATC	2 cut(s)	451, 694
BspCNI	CTCAG	5 cut(s)	131, 436, 604, 711, 808
BspMAI	CTGCAG	2 cut(s)	217, 559
BsrI	ACTGG	4 cut(s)	411, 423, 464, 883
BssMI	GATC	2 cut(s)	451, 694
BssNI	GRCGYC	1 cut(s)	92
Bst4CI	ACNGT	2 cut(s)	197, 644
Bst6I	CTCTTC	2 cut(s)	463, 724
BstACI	GRCGYC	1 cut(s)	92
BstC8I	GCNNGC	1 cut(s)	217
BstDEI	CTNAG	7 cut(s)	108, 118, 444, 504, 612, 698, 816
BstF5I	GGATG	1 cut(s)	391
BstH2I	RGCGCY	1 cut(s)	563
BstHHI	GCGC	1 cut(s)	562
BstKTI	GATC	2 cut(s)	454, 697
BstMAI	GTCTC	2 cut(s)	759, 794
BstMBI	GATC	2 cut(s)	451, 694
BstNSI	RCATGY	1 cut(s)	382
BstSFI	CTRYAG	2 cut(s)	213, 555
BstV1I	GCAGC	4 cut(s)	199, 538, 549, 569
BsuI	GTATCC	2 cut(s)	337, 430
BtsCI	GGATG	1 cut(s)	391
BtsIMutI	CAGTG	2 cut(s)	430, 441
Cac8I	GCNNGC	1 cut(s)	217
CaiI	CAGNNNCTG	1 cut(s)	692
CfoI	GCGC	1 cut(s)	562
Cfr13I	GGNCC	3 cut(s)	409, 677, 880
CseI	GACGC	1 cut(s)	100
CviAII	CATG	4 cut(s)	79, 340, 379, 431
CviJI	RGCY	8 cut(s)	117, 503, 586, 607, 704, 820, 840, 857
CviKI_1	RGCY	8 cut(s)	117, 503, 586, 607, 704, 820, 840, 857
DdeI	CTNAG	7 cut(s)	108, 118, 444, 504, 612, 698, 816
DpnI	GATC	2 cut(s)	453, 696
DpnII	GATC	2 cut(s)	451, 694
DraIII	CACNNNGTG	1 cut(s)	209
Eam1104I	CTCTTC	2 cut(s)	463, 724
EarI	CTCTTC	2 cut(s)	463, 724
Ecl136II	GAGCTC	1 cut(s)	586
Eco24I	GRGCYC	1 cut(s)	588
Eco47I	GGWCC	3 cut(s)	409, 677, 880
Eco47III	AGCGCT	1 cut(s)	561
Eco53kI	GAGCTC	1 cut(s)	586
EcoICRI	GAGCTC	1 cut(s)	586
EcoRI	GAATTC	1 cut(s)	397
EcoT38I	GRGCYC	1 cut(s)	588
FaeI	CATG	4 cut(s)	82, 343, 382, 434
FaiI	YATR	8 cut(s)	80, 333, 341, 380, 432, 437, 675, 870
FaqI	GGGAC	1 cut(s)	417
FatI	CATG	4 cut(s)	78, 339, 378, 430
FblI	GTMKAC	1 cut(s)	123
Fnu4HI	GCNGC	4 cut(s)	213, 527, 558, 563
FokI	GGATG	1 cut(s)	378
FriOI	GRGCYC	1 cut(s)	588
Fsp4HI	GCNGC	4 cut(s)	213, 527, 558, 563
FspBI	CTAG	2 cut(s)	5, 321
GlaI	GCGC	1 cut(s)	561
GluI	GCNGC	4 cut(s)	213, 527, 558, 563
GsuI	CTGGAG	1 cut(s)	481
HaeII	RGCGCY	1 cut(s)	563
HgaI	GACGC	1 cut(s)	100
HhaI	GCGC	1 cut(s)	562
Hin1I	GRCGYC	1 cut(s)	92
Hin1II	CATG	4 cut(s)	82, 343, 382, 434
Hin6I	GCGC	1 cut(s)	560
HinP1I	GCGC	1 cut(s)	560
HincII	GTYRAC	1 cut(s)	715
HindII	GTYRAC	1 cut(s)	715
HinfI	GANTC	6 cut(s)	83, 230, 324, 497, 516, 746
HphI	GGTGA	2 cut(s)	203, 236
Hpy166II	GTNNAC	4 cut(s)	124, 376, 715, 866
Hpy188I	TCNGA	8 cut(s)	22, 238, 312, 396, 583, 613, 701, 724
Hpy188III	TCNNGA	8 cut(s)	44, 180, 321, 402, 455, 513, 680, 815
Hpy8I	GTNNAC	4 cut(s)	124, 376, 715, 866
HpyAV	CCTTC	3 cut(s)	67, 107, 597
HpyCH4III	ACNGT	2 cut(s)	197, 644
HpyCH4V	TGCA	6 cut(s)	15, 152, 215, 272, 557, 686
HpyF3I	CTNAG	7 cut(s)	108, 118, 444, 504, 612, 698, 816
Hsp92I	GRCGYC	1 cut(s)	92
Hsp92II	CATG	4 cut(s)	82, 343, 382, 434
HspAI	GCGC	1 cut(s)	560
Kzo9I	GATC	2 cut(s)	451, 694
LmnI	GCTCC	2 cut(s)	583, 591
Lsp1109I	GCAGC	4 cut(s)	199, 538, 549, 569
LweI	GCATC	3 cut(s)	2, 673, 750
MaeI	CTAG	2 cut(s)	5, 321
MaeIII	GTNAC	1 cut(s)	191
MalI	GATC	2 cut(s)	453, 696
MboI	GATC	2 cut(s)	451, 694
MboII	GAAGA	7 cut(s)	65, 461, 477, 480, 647, 679, 711
MhlI	GDGCHC	2 cut(s)	430, 588
MluCI	AATT	8 cut(s)	39, 273, 284, 316, 349, 356, 397, 651
MlyI	GAGTC	2 cut(s)	333, 506
MnlI	CCTC	9 cut(s)	16, 124, 215, 220, 439, 501, 607, 798, 831
MroXI	GAANNNNTTC	2 cut(s)	60, 607
MseI	TTAA	2 cut(s)	291, 599
MslI	CAYNNNNRTG	1 cut(s)	131
Mva1269I	GAATGC	1 cut(s)	250
NdeII	GATC	2 cut(s)	451, 694
NlaIII	CATG	4 cut(s)	82, 343, 382, 434
NmuCI	GTSAC	1 cut(s)	191
NspI	RCATGY	1 cut(s)	382
PctI	GAATGC	1 cut(s)	250
PdmI	GAANNNNTTC	2 cut(s)	60, 607
PfeI	GAWTC	4 cut(s)	83, 230, 516, 746
PkrI	GCNGC	4 cut(s)	214, 528, 559, 564
PleI	GAGTC	2 cut(s)	332, 505
PpsI	GAGTC	2 cut(s)	332, 505
Psp124BI	GAGCTC	1 cut(s)	588
PspPI	GGNCC	3 cut(s)	409, 677, 880
PstI	CTGCAG	2 cut(s)	217, 559
PstNI	CAGNNNCTG	1 cut(s)	692
RseI	CAYNNNNRTG	1 cut(s)	131
SacI	GAGCTC	1 cut(s)	588
SaqAI	TTAA	2 cut(s)	291, 599
SatI	GCNGC	4 cut(s)	213, 527, 558, 563
Sau3AI	GATC	2 cut(s)	451, 694
Sau96I	GGNCC	3 cut(s)	409, 677, 880
SchI	GAGTC	2 cut(s)	333, 506
SduI	GDGCHC	2 cut(s)	430, 588
SetI	ASST	8 cut(s)	135, 226, 414, 505, 512, 588, 706, 882
SfaNI	GCATC	3 cut(s)	2, 673, 750
SfcI	CTRYAG	2 cut(s)	213, 555
SinI	GGWCC	3 cut(s)	409, 677, 880
SmiMI	CAYNNNNRTG	1 cut(s)	131
Sse9I	AATT	8 cut(s)	39, 273, 284, 316, 349, 356, 397, 651
SspI	AATATT	1 cut(s)	367
SspMI	CTAG	2 cut(s)	5, 321
SstI	GAGCTC	1 cut(s)	588
TaaI	ACNGT	2 cut(s)	197, 644
TaqI	TCGA	2 cut(s)	744, 823
TasI	AATT	8 cut(s)	39, 273, 284, 316, 349, 356, 397, 651
TfiI	GAWTC	4 cut(s)	83, 230, 516, 746
Tru1I	TTAA	2 cut(s)	291, 599
Tru9I	TTAA	2 cut(s)	291, 599
TscAI	CASTG	2 cut(s)	430, 448
TseFI	GTSAC	1 cut(s)	191
TseI	GCWGC	4 cut(s)	212, 526, 557, 562
Tsp45I	GTSAC	1 cut(s)	191
TspDTI	ATGAA	2 cut(s)	222, 648
TspGWI	ACGGA	1 cut(s)	509
TspRI	CASTG	2 cut(s)	430, 448
VpaK11BI	GGWCC	3 cut(s)	409, 677, 880
XapI	RAATTY	4 cut(s)	39, 284, 349, 397
XbaI	TCTAGA	1 cut(s)	320
XceI	RCATGY	1 cut(s)	382
XmiI	GTMKAC	1 cut(s)	123
XmnI	GAANNNNTTC	2 cut(s)	60, 607
XspI	CTAG	2 cut(s)	5, 321

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.