Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0003937

Physical Location & Seq

Genomic Coordinates Forward (+)

17938811 .. 17943059

Gene Structure 4249 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ23600

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1029 bp

ATGTATAACAAGCTCCAGCTCTACCCTGCAAAAAACCGAAACCTACTGTCTCTACTCCCTCTCCTTCTCTTTCTCTTGTTTGGCGCCACAAACACTTTGACAGGATTGCAAATTTGCTATACCATGGAGACTAGGGAAACCAGTGCTGCTTCAACTCAGGGTGTGGCATTAGAAATTCAAGATAAAGAAGAAAGGGTTCTCAATGAGAAGGACTTGGAACCAATGACACCAATGACAACAACTAAGGAAGGCTCAGTAGACATTGAGTTGGTAGGCAATAGAGTTGCAGATAGCGAAAAGGATACTTCTTTTTCTGGAAATAGTGGTGACGGTGTTTCACAGGGTGCTGCAGGCAGAGGCGAGGATTCATCAGATGAGAATGCTGACACTAACCGAGATTTTTCTGCAATTCAAAAGCAAATTTTTAACCAGATGGGGGCAGTTCAGAATAATTCTAGAGTCCTTTACAGTGCCACGGATACAAATTTGAAATTGTTGAATATTGAGGTAAACATGCCTGAAACTCATCCGAATTCGGGACTGGACCTGAATGTATCCAGTGCTCATGCCATACGCACAGAGGAAGATCACGACCGGAGAAGAAGAGAAAAGAGAAAGCAGTCTAATAGGGAGTCAGCTAAGAGGTCAAGATTCCGTAGGCAGCAAGAATGTGAGAAACTACGAGAAACTGCAGCAATGCTGAATGGTGAAATCTCGGAGCTCCCAAATGAGTTAAGAAGGCTTTCTGAGGAGTGTGGGAAACTTGATGAAGAAAACAGTTCCCTAATTGATGAGATGGAGAAGATGTATGGTCCAGATGCAGTTGCTGATCTCAGAGCTGTGAAAGTCAACTCTTCCGATGATGGAAGCAACAGCATCGAATCAAAAACTCCAAGCAGAGACAACTCAACTTCTCCTACTCCTTCTCATCGAAAAGAGACTTCTCCTACTCCTCCTGAGCCTCGATTATTTGGTGTCAGCCTACGACCAAACTTGGCTGATTGTTTACATAGTTCAAAGGTCCAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MFMR MFMR_assoc bZIP_1

Protein Analysis

342

Amino Acids

38.02

Weight (kDa)

5.18

Isoelectric Point (pI)

55.95

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
bZIP_1	PF00170	199 - 259	3.2e-12	bZIP transcription factor

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003937)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g08260 FvH4_2g08260 FvH4_2g08260 FvH4_2g08260
malus_domestica	MD10G1080800.v1.1
prunus_persica	Prupe.8G102100_v2.0.a1 Prupe.8G102100_v2.0.a1 Prupe.8G102100_v2.0.a1 Prupe.8G102100_v2.0.a1 Prupe.8G102100_v2.0.a1 Prupe.8G102100_v2.0.a1 Prupe.8G102100_v2.0.a1 Prupe.8G102100_v2.0.a1 Prupe.8G102100_v2.0.a1 Prupe.8G102100_v2.0.a1 Prupe.8G102100_v2.0.a1 Prupe.8G102100_v2.0.a1 Prupe.8G102100_v2.0.a1 Prupe.8G102100_v2.0.a1 Prupe.8G102100_v2.0.a1 Prupe.8G102100_v2.0.a1
pyrus_communis	pycom10g06400
rosa_chinensis	RchiOBHm_Chr6g0263141
rosa_laevigata	RLG00000014369
rosa_multiflora	Rmu_sc0015149.1_g000003 Rmu_sc0039118.1_g000001
rosa_roxburghii	Rroxscaffold_176G00430940 Rroxscaffold_7G00204630
rosa_rugosa	Rorug06G0003800
rosa_samantha	Rh6AG122900 Rh6BG117900 Rh6CG116100 Rh6DG104600
rosa_wichuraiana	Rw6G010560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	83
AccI	GTMKAC	1 cut(s)	258
AcsI	RAATTY	5 cut(s)	111, 174, 420, 484, 532
AcyI	GRCGYC	1 cut(s)	84
AdeI	CACNNNGTG	1 cut(s)	344
AfiI	CCNNNNNNNGG	2 cut(s)	436, 536
AgsI	TTSAA	6 cut(s)	153, 179, 413, 490, 499, 1017
AluBI	AGCT	5 cut(s)	13, 19, 638, 721, 839
AluI	AGCT	5 cut(s)	13, 19, 638, 721, 839
Alw21I	GWGCWC	2 cut(s)	565, 723
Alw26I	GTCTC	4 cut(s)	54, 122, 894, 932
AlwNI	CAGNNNCTG	1 cut(s)	827
ApeKI	GCWGC	4 cut(s)	146, 347, 661, 692
ApoI	RAATTY	5 cut(s)	111, 174, 420, 484, 532
Asp700I	GAANNNNTTC	2 cut(s)	195, 742
AspLEI	GCGC	1 cut(s)	86
AspS9I	GGNCC	3 cut(s)	544, 812, 1021
AsuHPI	GGTGA	2 cut(s)	338, 719
AvaII	GGWCC	3 cut(s)	544, 812, 1021
BanI	GGYRCC	1 cut(s)	83
BanII	GRGCYC	1 cut(s)	723
Bbv12I	GWGCWC	2 cut(s)	565, 723
BbvI	GCAGC	4 cut(s)	133, 334, 673, 704
BccI	CCATC	3 cut(s)	427, 790, 857
BcgI	CGANNNNNNTGC	2 cut(s)	859, 893
BciVI	GTATCC	3 cut(s)	295, 472, 565
BcoDI	GTCTC	4 cut(s)	54, 122, 894, 932
BfaI	CTAG	2 cut(s)	132, 456
BfmI	CTRYAG	2 cut(s)	348, 690
BfoI	RGCGCY	1 cut(s)	87
BfuI	GTATCC	3 cut(s)	295, 472, 565
BisI	GCNGC	4 cut(s)	147, 348, 662, 693
BlsI	GCNGC	4 cut(s)	148, 349, 663, 694
Bme18I	GGWCC	3 cut(s)	544, 812, 1021
BmgT120I	GGNCC	3 cut(s)	544, 812, 1021
BmiI	GGNNCC	2 cut(s)	85, 219
BmsI	GCATC	2 cut(s)	808, 885
Bpu10I	CCTNAGC	1 cut(s)	957
BsaHI	GRCGYC	1 cut(s)	84
BsaJI	CCNNGG	2 cut(s)	123, 474
BsaWI	WCCGGW	1 cut(s)	594
BsaXI	ACNNNNNCTCC	4 cut(s)	45, 75, 791, 821
Bsc4I	CCNNNNNNNGG	2 cut(s)	436, 536
Bse1I	ACTGG	4 cut(s)	141, 546, 558, 1024
Bse3DI	GCAATG	1 cut(s)	702
BseDI	CCNNGG	2 cut(s)	123, 474
BseGI	GGATG	1 cut(s)	526
BseLI	CCNNNNNNNGG	2 cut(s)	436, 536
BseMI	GCAATG	1 cut(s)	702
BseMII	CTCAG	5 cut(s)	170, 267, 738, 847, 948
BseNI	ACTGG	4 cut(s)	141, 546, 558, 1024
BseRI	GAGGAG	2 cut(s)	764, 942
BseXI	GCAGC	4 cut(s)	133, 334, 673, 704
Bsh1285I	CGRYCG	1 cut(s)	595
BshNI	GGYRCC	1 cut(s)	83
BsiEI	CGRYCG	1 cut(s)	595
BsiHKAI	GWGCWC	2 cut(s)	565, 723
BsiSI	CCGG	1 cut(s)	595
BslFI	GGGAC	1 cut(s)	552
BslI	CCNNNNNNNGG	2 cut(s)	436, 536
BsmAI	GTCTC	4 cut(s)	54, 122, 894, 932
BsmFI	GGGAC	1 cut(s)	552
BsmI	GAATGC	1 cut(s)	385
Bsp1286I	GDGCHC	2 cut(s)	565, 723
Bsp143I	GATC	2 cut(s)	586, 829
Bsp19I	CCATGG	1 cut(s)	123
BspCNI	CTCAG	5 cut(s)	169, 266, 739, 846, 949
BspLI	GGNNCC	2 cut(s)	85, 219
BspMAI	CTGCAG	2 cut(s)	352, 694
BspT107I	GGYRCC	1 cut(s)	83
BsrDI	GCAATG	1 cut(s)	702
BsrI	ACTGG	4 cut(s)	141, 546, 558, 1024
BssECI	CCNNGG	2 cut(s)	123, 474
BssMI	GATC	2 cut(s)	586, 829
BssNI	GRCGYC	1 cut(s)	84
BssT1I	CCWWGG	1 cut(s)	123
Bst4CI	ACNGT	4 cut(s)	48, 332, 470, 779
Bst6I	CTCTTC	2 cut(s)	598, 859
BstACI	GRCGYC	1 cut(s)	84
BstC8I	GCNNGC	1 cut(s)	352
BstDEI	CTNAG	7 cut(s)	156, 243, 253, 639, 747, 833, 957
BstDSI	CCRYGG	2 cut(s)	123, 474
BstF5I	GGATG	1 cut(s)	526
BstH2I	RGCGCY	1 cut(s)	87
BstHHI	GCGC	1 cut(s)	86
BstKTI	GATC	2 cut(s)	589, 832
BstMAI	GTCTC	4 cut(s)	54, 122, 894, 932
BstMBI	GATC	2 cut(s)	586, 829
BstMCI	CGRYCG	1 cut(s)	595
BstNSI	RCATGY	1 cut(s)	517
BstSFI	CTRYAG	2 cut(s)	348, 690
BstV1I	GCAGC	4 cut(s)	133, 334, 673, 704
BsuI	GTATCC	3 cut(s)	295, 472, 565
BtgI	CCRYGG	2 cut(s)	123, 474
BtsCI	GGATG	1 cut(s)	526
BtsIMutI	CAGTG	3 cut(s)	148, 475, 565
Cac8I	GCNNGC	1 cut(s)	352
CaiI	CAGNNNCTG	1 cut(s)	827
CfoI	GCGC	1 cut(s)	86
Cfr13I	GGNCC	3 cut(s)	544, 812, 1021
CviAII	CATG	3 cut(s)	124, 514, 566
DdeI	CTNAG	7 cut(s)	156, 243, 253, 639, 747, 833, 957
DinI	GGCGCC	1 cut(s)	85
DpnI	GATC	2 cut(s)	588, 831
DpnII	GATC	2 cut(s)	586, 829
DraIII	CACNNNGTG	1 cut(s)	344
Eam1104I	CTCTTC	2 cut(s)	598, 859
EarI	CTCTTC	2 cut(s)	598, 859
Ecl136II	GAGCTC	1 cut(s)	721
Eco130I	CCWWGG	1 cut(s)	123
Eco24I	GRGCYC	1 cut(s)	723
Eco47I	GGWCC	3 cut(s)	544, 812, 1021
Eco53kI	GAGCTC	1 cut(s)	721
EcoICRI	GAGCTC	1 cut(s)	721
EcoRI	GAATTC	1 cut(s)	532
EcoT14I	CCWWGG	1 cut(s)	123
EcoT38I	GRGCYC	1 cut(s)	723
EgeI	GGCGCC	1 cut(s)	85
EheI	GGCGCC	1 cut(s)	85
ErhI	CCWWGG	1 cut(s)	123
FaeI	CATG	3 cut(s)	127, 517, 569
FaiI	YATR	8 cut(s)	6, 120, 125, 515, 567, 572, 810, 1011
FaqI	GGGAC	1 cut(s)	552
FatI	CATG	3 cut(s)	123, 513, 565
FblI	GTMKAC	1 cut(s)	258
Fnu4HI	GCNGC	4 cut(s)	147, 348, 662, 693
FokI	GGATG	1 cut(s)	513
FriOI	GRGCYC	1 cut(s)	723
Fsp4HI	GCNGC	4 cut(s)	147, 348, 662, 693
FspBI	CTAG	2 cut(s)	132, 456
GlaI	GCGC	1 cut(s)	85
GluI	GCNGC	4 cut(s)	147, 348, 662, 693
HaeII	RGCGCY	1 cut(s)	87
HapII	CCGG	1 cut(s)	595
HhaI	GCGC	1 cut(s)	86
Hin1I	GRCGYC	1 cut(s)	84
Hin1II	CATG	3 cut(s)	127, 517, 569
Hin6I	GCGC	1 cut(s)	84
HinP1I	GCGC	1 cut(s)	84
HincII	GTYRAC	1 cut(s)	850
HindII	GTYRAC	1 cut(s)	850
HinfI	GANTC	5 cut(s)	365, 459, 632, 651, 881
HpaII	CCGG	1 cut(s)	595
HphI	GGTGA	2 cut(s)	338, 719
Hpy166II	GTNNAC	4 cut(s)	259, 511, 850, 1007
Hpy188I	TCNGA	7 cut(s)	373, 447, 531, 718, 748, 836, 859
Hpy188III	TCNNGA	8 cut(s)	179, 315, 456, 537, 590, 648, 815, 956
Hpy8I	GTNNAC	4 cut(s)	259, 511, 850, 1007
HpyAV	CCTTC	5 cut(s)	74, 202, 242, 732, 933
HpyCH4III	ACNGT	4 cut(s)	48, 332, 470, 779
HpyCH4V	TGCA	7 cut(s)	29, 109, 287, 350, 407, 692, 821
HpyF3I	CTNAG	7 cut(s)	156, 243, 253, 639, 747, 833, 957
Hsp92I	GRCGYC	1 cut(s)	84
Hsp92II	CATG	3 cut(s)	127, 517, 569
HspAI	GCGC	1 cut(s)	84
KasI	GGCGCC	1 cut(s)	83
Kzo9I	GATC	2 cut(s)	586, 829
LmnI	GCTCC	3 cut(s)	18, 718, 726
Lsp1109I	GCAGC	4 cut(s)	133, 334, 673, 704
LweI	GCATC	2 cut(s)	808, 885
MaeI	CTAG	2 cut(s)	132, 456
MaeIII	GTNAC	1 cut(s)	326
MalI	GATC	2 cut(s)	588, 831
MboI	GATC	2 cut(s)	586, 829
MboII	GAAGA	7 cut(s)	200, 596, 612, 615, 782, 814, 846
MhlI	GDGCHC	2 cut(s)	565, 723
MluCI	AATT	9 cut(s)	111, 174, 408, 420, 451, 484, 491, 532, 786
Mly113I	GGCGCC	1 cut(s)	84
MlyI	GAGTC	2 cut(s)	468, 641
MnlI	CCTC	9 cut(s)	69, 350, 355, 499, 574, 636, 742, 963, 972
MroXI	GAANNNNTTC	2 cut(s)	195, 742
MseI	TTAA	2 cut(s)	426, 734
MspI	CCGG	1 cut(s)	595
Mva1269I	GAATGC	1 cut(s)	385
NarI	GGCGCC	1 cut(s)	84
NcoI	CCATGG	1 cut(s)	123
NdeII	GATC	2 cut(s)	586, 829
NlaIII	CATG	3 cut(s)	127, 517, 569
NlaIV	GGNNCC	2 cut(s)	85, 219
NmuCI	GTSAC	1 cut(s)	326
NspI	RCATGY	1 cut(s)	517
PctI	GAATGC	1 cut(s)	385
PdmI	GAANNNNTTC	2 cut(s)	195, 742
PfeI	GAWTC	3 cut(s)	365, 651, 881
PkrI	GCNGC	4 cut(s)	148, 349, 663, 694
PleI	GAGTC	2 cut(s)	467, 640
PluTI	GGCGCC	1 cut(s)	87
PpsI	GAGTC	2 cut(s)	467, 640
Psp124BI	GAGCTC	1 cut(s)	723
PspN4I	GGNNCC	2 cut(s)	85, 219
PspPI	GGNCC	3 cut(s)	544, 812, 1021
PstI	CTGCAG	2 cut(s)	352, 694
PstNI	CAGNNNCTG	1 cut(s)	827
SacI	GAGCTC	1 cut(s)	723
SaqAI	TTAA	2 cut(s)	426, 734
SatI	GCNGC	4 cut(s)	147, 348, 662, 693
Sau3AI	GATC	2 cut(s)	586, 829
Sau96I	GGNCC	3 cut(s)	544, 812, 1021
SchI	GAGTC	2 cut(s)	468, 641
SduI	GDGCHC	2 cut(s)	565, 723
SfaNI	GCATC	2 cut(s)	808, 885
SfcI	CTRYAG	2 cut(s)	348, 690
SfoI	GGCGCC	1 cut(s)	85
SinI	GGWCC	3 cut(s)	544, 812, 1021
Sse9I	AATT	9 cut(s)	111, 174, 408, 420, 451, 484, 491, 532, 786
SspDI	GGCGCC	1 cut(s)	83
SspI	AATATT	1 cut(s)	502
SspMI	CTAG	2 cut(s)	132, 456
SstI	GAGCTC	1 cut(s)	723
StyI	CCWWGG	1 cut(s)	123
TaaI	ACNGT	4 cut(s)	48, 332, 470, 779
TaqI	TCGA	3 cut(s)	879, 931, 964
TasI	AATT	9 cut(s)	111, 174, 408, 420, 451, 484, 491, 532, 786
TfiI	GAWTC	3 cut(s)	365, 651, 881
Tru1I	TTAA	2 cut(s)	426, 734
Tru9I	TTAA	2 cut(s)	426, 734
TscAI	CASTG	3 cut(s)	148, 475, 565
TseFI	GTSAC	1 cut(s)	326
TseI	GCWGC	4 cut(s)	146, 347, 661, 692
Tsp45I	GTSAC	1 cut(s)	326
TspDTI	ATGAA	2 cut(s)	357, 783
TspGWI	ACGGA	2 cut(s)	491, 644
TspRI	CASTG	3 cut(s)	148, 475, 565
VpaK11BI	GGWCC	3 cut(s)	544, 812, 1021
XapI	RAATTY	5 cut(s)	111, 174, 420, 484, 532
XbaI	TCTAGA	1 cut(s)	455
XceI	RCATGY	1 cut(s)	517
XmiI	GTMKAC	1 cut(s)	258
XmnI	GAANNNNTTC	2 cut(s)	195, 742
XspI	CTAG	2 cut(s)	132, 456

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.