Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr6

Orthogroup ID

OG0003937

Physical Location & Seq

Genomic Coordinates Forward (+)

18196769 .. 18202210

Gene Structure 5442 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw6G010560.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1020 bp

ATGCGGTGGTCGATTGTGGGTCACATTGGCTATCTGGGGAAATGCAAGGCTTCAGTGGCCATTGTTGAGATCTATGGCTTGTACATTGTAGATGGTACAGGATTGCAAATTTGCTATACCATGGAGACTAAGGAAACCAGTGCTGCTTCAACTCAGGGTGTGGCATTAGAAATTCAAGATAAAGAAGAAAGGGTTCTCAATGAGAAGGACATGGAATCAATGACGCCAATGACAACAACTAAGGAAGGCTCAGTAGACATTGAGGTGGTAGGCAATAGAGTTGCAGATAGCGAAAAGGAAACTTCTTTTTCTGGAAATAGTGGTGACGGTGTTTCACAGGGTGCTGCAGGCAGAGGCGAGGATTCATCAGATGAGAATGCTGACACTAACCGAGATTTTTCTGCAATTCAAAAGCAAATTTTTAACCAGATGGGGGCAGTTCAGAATAATTCTAGAGTCCTTTATAGTGGCATGGATACAAATTTGAAATTGTTGAATATTGGGGTAAACATGCCTGAAACCCATCCGAATTCGGGACTGGACCTGAATGTATCCAGTGCTCATGCCATACACACAGAGGAAGATCACGACTGGAGAAGAAGAGAAAAGAGAAAGCAGTCTAATAGGGAGTCAGCTAAGAGGTCAAGATTCCGTAGGCAGCAAGAATGTGAGAAACTACGAGAAACTGCAGCGATGCTGAATAGTGAAATCTTGGAGCTCCCAAATGAGTTAAGAAGGCTTTCTGAGGAGTGTGGGAAACTTGATGAAGAAAACAGTTCCCTAATTGATGAGATGGAGAAGATGTATGGTCCAGATGCAGTTGCTGATCTCAGAGCTGTGAAAGTCAACTCTTCCGATGATGGAAGCAACAGCATCGAATCAAAAACTCCAAGCAGAGACAACTCAACTTCTCCTACTCCTCATCAAAAAGAGACTTCTCCTACTCCTGAGCCTCGATTATTTGGTGTCAGCCTACGACCAAACTTGGCTGATTGTTTACATAGTTCAAAGGTCCAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MFMR MFMR_assoc bZIP_1

Protein Analysis

339

Amino Acids

37.51

Weight (kDa)

5.06

Isoelectric Point (pI)

52.36

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
bZIP_1	PF00170	200 - 258	3.1e-11	bZIP transcription factor

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003937)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g08260 FvH4_2g08260 FvH4_2g08260 FvH4_2g08260
malus_domestica	MD10G1080800.v1.1
prunus_persica	Prupe.8G102100_v2.0.a1 Prupe.8G102100_v2.0.a1 Prupe.8G102100_v2.0.a1 Prupe.8G102100_v2.0.a1 Prupe.8G102100_v2.0.a1 Prupe.8G102100_v2.0.a1 Prupe.8G102100_v2.0.a1 Prupe.8G102100_v2.0.a1 Prupe.8G102100_v2.0.a1 Prupe.8G102100_v2.0.a1 Prupe.8G102100_v2.0.a1 Prupe.8G102100_v2.0.a1 Prupe.8G102100_v2.0.a1 Prupe.8G102100_v2.0.a1 Prupe.8G102100_v2.0.a1 Prupe.8G102100_v2.0.a1
pyrus_communis	pycom10g06400
rosa_chinensis	RchiOBHm_Chr6g0263141
rosa_laevigata	RLG00000014369
rosa_multiflora	Rmu_sc0015149.1_g000003 Rmu_sc0039118.1_g000001
rosa_roxburghii	Rroxscaffold_176G00430940 Rroxscaffold_7G00204630
rosa_rugosa	Rorug06G0003800
rosa_samantha	Rh6AG122900 Rh6BG117900 Rh6CG116100 Rh6DG104600
rosa_wichuraiana	Rw6G010560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	255
AciI	CCGC	1 cut(s)	4
AcoI	YGGCCR	1 cut(s)	57
AcsI	RAATTY	5 cut(s)	108, 171, 417, 481, 529
AcuI	CTGAAG	1 cut(s)	36
AcyI	GRCGYC	1 cut(s)	224
AdeI	CACNNNGTG	1 cut(s)	341
AfaI	GTAC	2 cut(s)	83, 97
AfiI	CCNNNNNNNGG	2 cut(s)	433, 533
AgsI	TTSAA	6 cut(s)	150, 176, 410, 487, 496, 1008
AluBI	AGCT	3 cut(s)	635, 718, 836
AluI	AGCT	3 cut(s)	635, 718, 836
Alw21I	GWGCWC	2 cut(s)	562, 720
Alw26I	GTCTC	3 cut(s)	119, 891, 926
AlwNI	CAGNNNCTG	1 cut(s)	824
AoxI	GGCC	1 cut(s)	57
ApeKI	GCWGC	4 cut(s)	143, 344, 658, 689
ApoI	RAATTY	5 cut(s)	108, 171, 417, 481, 529
Asp700I	GAANNNNTTC	2 cut(s)	192, 739
AspS9I	GGNCC	3 cut(s)	541, 809, 1012
AsuHPI	GGTGA	1 cut(s)	335
AvaII	GGWCC	3 cut(s)	541, 809, 1012
BalI	TGGCCA	1 cut(s)	59
BanII	GRGCYC	1 cut(s)	720
Bbv12I	GWGCWC	2 cut(s)	562, 720
BbvI	GCAGC	4 cut(s)	130, 331, 670, 701
BccI	CCATC	5 cut(s)	86, 424, 531, 787, 854
BcgI	CGANNNNNNTGC	2 cut(s)	856, 890
BciVI	GTATCC	2 cut(s)	469, 562
BcoDI	GTCTC	3 cut(s)	119, 891, 926
BfaI	CTAG	1 cut(s)	453
BfmI	CTRYAG	2 cut(s)	345, 687
BfuI	GTATCC	2 cut(s)	469, 562
BglII	AGATCT	1 cut(s)	69
BisI	GCNGC	4 cut(s)	144, 345, 659, 690
BlsI	GCNGC	4 cut(s)	145, 346, 660, 691
Bme18I	GGWCC	3 cut(s)	541, 809, 1012
BmgT120I	GGNCC	3 cut(s)	541, 809, 1012
BmsI	GCATC	3 cut(s)	684, 805, 882
BpmI	CTGGAG	1 cut(s)	613
Bpu10I	CCTNAGC	1 cut(s)	948
BsaHI	GRCGYC	1 cut(s)	224
BsaJI	CCNNGG	1 cut(s)	120
BsaXI	ACNNNNNCTCC	2 cut(s)	788, 818
Bsc4I	CCNNNNNNNGG	2 cut(s)	433, 533
Bse1I	ACTGG	5 cut(s)	138, 543, 555, 596, 1015
BseDI	CCNNGG	1 cut(s)	120
BseGI	GGATG	1 cut(s)	523
BseLI	CCNNNNNNNGG	2 cut(s)	433, 533
BseMII	CTCAG	5 cut(s)	167, 264, 735, 844, 939
BseNI	ACTGG	5 cut(s)	138, 543, 555, 596, 1015
BseRI	GAGGAG	2 cut(s)	761, 909
BseXI	GCAGC	4 cut(s)	130, 331, 670, 701
BshFI	GGCC	1 cut(s)	59
BsiHKAI	GWGCWC	2 cut(s)	562, 720
BslFI	GGGAC	1 cut(s)	549
BslI	CCNNNNNNNGG	2 cut(s)	433, 533
BsmAI	GTCTC	3 cut(s)	119, 891, 926
BsmFI	GGGAC	1 cut(s)	549
BsmI	GAATGC	1 cut(s)	382
BsnI	GGCC	1 cut(s)	59
Bsp1286I	GDGCHC	2 cut(s)	562, 720
Bsp1407I	TGTACA	1 cut(s)	81
Bsp143I	GATC	3 cut(s)	69, 583, 826
Bsp19I	CCATGG	1 cut(s)	120
BspACI	CCGC	1 cut(s)	4
BspANI	GGCC	1 cut(s)	59
BspCNI	CTCAG	5 cut(s)	166, 263, 736, 843, 940
BspMAI	CTGCAG	2 cut(s)	349, 691
BsrGI	TGTACA	1 cut(s)	81
BsrI	ACTGG	5 cut(s)	138, 543, 555, 596, 1015
BssECI	CCNNGG	1 cut(s)	120
BssMI	GATC	3 cut(s)	69, 583, 826
BssNI	GRCGYC	1 cut(s)	224
BssT1I	CCWWGG	1 cut(s)	120
Bst4CI	ACNGT	2 cut(s)	329, 776
Bst6I	CTCTTC	2 cut(s)	595, 856
BstACI	GRCGYC	1 cut(s)	224
BstAUI	TGTACA	1 cut(s)	81
BstC8I	GCNNGC	1 cut(s)	349
BstDEI	CTNAG	8 cut(s)	129, 153, 240, 250, 636, 744, 830, 948
BstDSI	CCRYGG	1 cut(s)	120
BstF5I	GGATG	1 cut(s)	523
BstKTI	GATC	3 cut(s)	72, 586, 829
BstMAI	GTCTC	3 cut(s)	119, 891, 926
BstMBI	GATC	3 cut(s)	69, 583, 826
BstMWI	GCNNNNNNNGC	1 cut(s)	56
BstNSI	RCATGY	1 cut(s)	514
BstSFI	CTRYAG	2 cut(s)	345, 687
BstV1I	GCAGC	4 cut(s)	130, 331, 670, 701
BstX2I	RGATCY	1 cut(s)	69
BstYI	RGATCY	1 cut(s)	69
BsuI	GTATCC	2 cut(s)	469, 562
BsuRI	GGCC	1 cut(s)	59
BtgI	CCRYGG	1 cut(s)	120
BtgZI	GCGATG	1 cut(s)	707
BtsCI	GGATG	1 cut(s)	523
BtsIMutI	CAGTG	3 cut(s)	60, 145, 562
Cac8I	GCNNGC	1 cut(s)	349
CaiI	CAGNNNCTG	1 cut(s)	824
Cfr13I	GGNCC	3 cut(s)	541, 809, 1012
CseI	GACGC	1 cut(s)	232
Csp6I	GTAC	2 cut(s)	82, 96
CviAII	CATG	5 cut(s)	121, 211, 472, 511, 563
CviQI	GTAC	2 cut(s)	82, 96
DdeI	CTNAG	8 cut(s)	129, 153, 240, 250, 636, 744, 830, 948
DpnI	GATC	3 cut(s)	71, 585, 828
DpnII	GATC	3 cut(s)	69, 583, 826
DraIII	CACNNNGTG	1 cut(s)	341
EaeI	YGGCCR	1 cut(s)	57
Eam1104I	CTCTTC	2 cut(s)	595, 856
EarI	CTCTTC	2 cut(s)	595, 856
Ecl136II	GAGCTC	1 cut(s)	718
Eco130I	CCWWGG	1 cut(s)	120
Eco24I	GRGCYC	1 cut(s)	720
Eco47I	GGWCC	3 cut(s)	541, 809, 1012
Eco53kI	GAGCTC	1 cut(s)	718
Eco57I	CTGAAG	1 cut(s)	36
EcoICRI	GAGCTC	1 cut(s)	718
EcoRI	GAATTC	1 cut(s)	529
EcoT14I	CCWWGG	1 cut(s)	120
EcoT38I	GRGCYC	1 cut(s)	720
ErhI	CCWWGG	1 cut(s)	120
FaeI	CATG	5 cut(s)	124, 214, 475, 514, 566
FaqI	GGGAC	1 cut(s)	549
FatI	CATG	5 cut(s)	120, 210, 471, 510, 562
FblI	GTMKAC	1 cut(s)	255
Fnu4HI	GCNGC	4 cut(s)	144, 345, 659, 690
FokI	GGATG	1 cut(s)	510
FriOI	GRGCYC	1 cut(s)	720
Fsp4HI	GCNGC	4 cut(s)	144, 345, 659, 690
FspBI	CTAG	1 cut(s)	453
GluI	GCNGC	4 cut(s)	144, 345, 659, 690
GsuI	CTGGAG	1 cut(s)	613
HaeIII	GGCC	1 cut(s)	59
HgaI	GACGC	1 cut(s)	232
Hin1I	GRCGYC	1 cut(s)	224
Hin1II	CATG	5 cut(s)	124, 214, 475, 514, 566
HincII	GTYRAC	1 cut(s)	847
HindII	GTYRAC	1 cut(s)	847
HinfI	GANTC	6 cut(s)	215, 362, 456, 629, 648, 878
HphI	GGTGA	1 cut(s)	335
Hpy166II	GTNNAC	4 cut(s)	256, 508, 847, 998
Hpy188I	TCNGA	6 cut(s)	370, 444, 528, 745, 833, 856
Hpy188III	TCNNGA	8 cut(s)	176, 312, 453, 534, 587, 645, 812, 947
Hpy8I	GTNNAC	4 cut(s)	256, 508, 847, 998
HpyAV	CCTTC	3 cut(s)	199, 239, 729
HpyCH4III	ACNGT	2 cut(s)	329, 776
HpyCH4V	TGCA	7 cut(s)	45, 106, 284, 347, 404, 689, 818
HpyF10VI	GCNNNNNNNGC	1 cut(s)	56
HpyF3I	CTNAG	8 cut(s)	129, 153, 240, 250, 636, 744, 830, 948
Hsp92I	GRCGYC	1 cut(s)	224
Hsp92II	CATG	5 cut(s)	124, 214, 475, 514, 566
Kzo9I	GATC	3 cut(s)	69, 583, 826
LmnI	GCTCC	2 cut(s)	715, 723
Lsp1109I	GCAGC	4 cut(s)	130, 331, 670, 701
LweI	GCATC	3 cut(s)	684, 805, 882
MaeI	CTAG	1 cut(s)	453
MaeIII	GTNAC	2 cut(s)	20, 323
MalI	GATC	3 cut(s)	71, 585, 828
MboI	GATC	3 cut(s)	69, 583, 826
MboII	GAAGA	7 cut(s)	197, 593, 609, 612, 779, 811, 843
MflI	RGATCY	1 cut(s)	69
MhlI	GDGCHC	2 cut(s)	562, 720
MlsI	TGGCCA	1 cut(s)	59
MluCI	AATT	9 cut(s)	108, 171, 405, 417, 448, 481, 488, 529, 783
MluNI	TGGCCA	1 cut(s)	59
MlyI	GAGTC	2 cut(s)	465, 638
MnlI	CCTC	8 cut(s)	256, 347, 352, 571, 633, 739, 930, 963
Mox20I	TGGCCA	1 cut(s)	59
MroXI	GAANNNNTTC	2 cut(s)	192, 739
MscI	TGGCCA	1 cut(s)	59
MseI	TTAA	2 cut(s)	423, 731
MslI	CAYNNNNRTG	1 cut(s)	263
Msp20I	TGGCCA	1 cut(s)	59
Mva1269I	GAATGC	1 cut(s)	382
MwoI	GCNNNNNNNGC	1 cut(s)	56
NcoI	CCATGG	1 cut(s)	120
NdeII	GATC	3 cut(s)	69, 583, 826
NlaIII	CATG	5 cut(s)	124, 214, 475, 514, 566
NmuCI	GTSAC	2 cut(s)	20, 323
NspI	RCATGY	1 cut(s)	514
PctI	GAATGC	1 cut(s)	382
PdmI	GAANNNNTTC	2 cut(s)	192, 739
PfeI	GAWTC	4 cut(s)	215, 362, 648, 878
PkrI	GCNGC	4 cut(s)	145, 346, 660, 691
PleI	GAGTC	2 cut(s)	464, 637
PpsI	GAGTC	2 cut(s)	464, 637
Psp124BI	GAGCTC	1 cut(s)	720
PspPI	GGNCC	3 cut(s)	541, 809, 1012
PstI	CTGCAG	2 cut(s)	349, 691
PstNI	CAGNNNCTG	1 cut(s)	824
PsuI	RGATCY	1 cut(s)	69
RsaI	GTAC	2 cut(s)	83, 97
RsaNI	GTAC	2 cut(s)	82, 96
RseI	CAYNNNNRTG	1 cut(s)	263
SacI	GAGCTC	1 cut(s)	720
SaqAI	TTAA	2 cut(s)	423, 731
SatI	GCNGC	4 cut(s)	144, 345, 659, 690
Sau3AI	GATC	3 cut(s)	69, 583, 826
Sau96I	GGNCC	3 cut(s)	541, 809, 1012
SchI	GAGTC	2 cut(s)	465, 638
SduI	GDGCHC	2 cut(s)	562, 720
SetI	ASST	7 cut(s)	267, 546, 637, 644, 720, 838, 1014
SfaNI	GCATC	3 cut(s)	684, 805, 882
SfcI	CTRYAG	2 cut(s)	345, 687
SinI	GGWCC	3 cut(s)	541, 809, 1012
SmiMI	CAYNNNNRTG	1 cut(s)	263
Sse9I	AATT	9 cut(s)	108, 171, 405, 417, 448, 481, 488, 529, 783
SsiI	CCGC	1 cut(s)	4
SspI	AATATT	1 cut(s)	499
SspMI	CTAG	1 cut(s)	453
SstI	GAGCTC	1 cut(s)	720
StyI	CCWWGG	1 cut(s)	120
TaaI	ACNGT	2 cut(s)	329, 776
TaqI	TCGA	3 cut(s)	11, 876, 955
TasI	AATT	9 cut(s)	108, 171, 405, 417, 448, 481, 488, 529, 783
TatI	WGTACW	1 cut(s)	81
TfiI	GAWTC	4 cut(s)	215, 362, 648, 878
Tru1I	TTAA	2 cut(s)	423, 731
Tru9I	TTAA	2 cut(s)	423, 731
TscAI	CASTG	3 cut(s)	60, 145, 562
TseFI	GTSAC	2 cut(s)	20, 323
TseI	GCWGC	4 cut(s)	143, 344, 658, 689
Tsp45I	GTSAC	2 cut(s)	20, 323
TspDTI	ATGAA	2 cut(s)	354, 780
TspGWI	ACGGA	1 cut(s)	641
TspRI	CASTG	3 cut(s)	60, 145, 562
VpaK11BI	GGWCC	3 cut(s)	541, 809, 1012
XapI	RAATTY	5 cut(s)	108, 171, 417, 481, 529
XbaI	TCTAGA	1 cut(s)	452
XceI	RCATGY	1 cut(s)	514
XmiI	GTMKAC	1 cut(s)	255
XmnI	GAANNNNTTC	2 cut(s)	192, 739
XspI	CTAG	1 cut(s)	453

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.