pycom10g06400

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr10
OG0003937
Physical Location & Seq
Reverse (-)
7427379 .. 7429385
2007 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom10g06400.1

Sequence Viewer

Length: 555 bp
ATGTATGCTTTTGCTAATTTAGGTTTGTTTTCTTGTTTCAGTCTTTTAGTTATTGGAGTTCATAACCAGCAGGATTGCAAATTTGCAATACCTTCCAAACAAATGGGGACTAGGGAAAGCAGTGCAGCTTCAACTCAGGTTGTGGCATTCGAAATGCAAAAAGAAGAACTGATTCTCGATGAGTACACAGAGTCATTGATAATATACGAGGGAGGCTCAGTAGGTACGGATTTCGTAGGTAAAAGAGTTGCTGAAGGCGAAAAGACAACTTGTATTTCTGGAAATAATTGTGATGGTGCTTCTCAAAGGAAGATTATGAACAGAGAATGGAAAGAAGAAGACTGGCTAACAGGGAAGCTGCTAGGAGGTCAAGAATACGCAGACAGCAAGAATGTGAGAAACTACGAGCAACCGCAGAGATTCTTGAGAGCGAGATTGCCCAGATCCCACGCGATATATGGAGGCTTTCTGAGCAAATTGAGAAACTCAAGGAAGAAAACTGTGAACACGAAAGATTCCTTGAAACAAGAAACCAGAATAACGTGTACAAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

185

Amino Acids

20.77

Weight (kDa)

8.94

Isoelectric Point (pI)

43.3

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 452
AciI CCGC 1 cut(s) 413
AclWI GGATC 1 cut(s) 438
AcsI RAATTY 1 cut(s) 80
AcuI CTGAAG 1 cut(s) 273
AfaI GTAC 3 cut(s) 185, 226, 547
AflIII ACRYGT 1 cut(s) 542
AgsI TTSAA 2 cut(s) 132, 523
AluBI AGCT 2 cut(s) 128, 358
AluI AGCT 2 cut(s) 128, 358
AlwI GGATC 1 cut(s) 438
ApeKI GCWGC 2 cut(s) 125, 358
ApoI RAATTY 1 cut(s) 80
Asp700I GAANNNNTTC 1 cut(s) 171
AsuII TTCGAA 1 cut(s) 150
BbsI GAAGAC 1 cut(s) 345
BbvI GCAGC 2 cut(s) 137, 345
BccI CCATC 1 cut(s) 287
BfaI CTAG 2 cut(s) 111, 362
BisI GCNGC 2 cut(s) 126, 359
BlsI GCNGC 2 cut(s) 127, 360
BpiI GAAGAC 1 cut(s) 345
BplI GAGNNNNNCTC 2 cut(s) 200, 232
Bpu14I TTCGAA 1 cut(s) 150
BpuEI CTTGAG 2 cut(s) 445, 472
BsaXI ACNNNNNCTCC 2 cut(s) 204, 234
Bse1I ACTGG 1 cut(s) 347
BseMII CTCAG 3 cut(s) 149, 231, 461
BseNI ACTGG 1 cut(s) 347
BseXI GCAGC 2 cut(s) 137, 345
BsgI GTGCAG 1 cut(s) 144
Bsh1236I CGCG 1 cut(s) 452
BslFI GGGAC 1 cut(s) 121
BsmFI GGGAC 1 cut(s) 121
BsmI GAATGC 1 cut(s) 146
Bsp119I TTCGAA 1 cut(s) 150
Bsp1407I TGTACA 1 cut(s) 545
Bsp143I GATC 1 cut(s) 443
BspACI CCGC 1 cut(s) 413
BspCNI CTCAG 3 cut(s) 148, 230, 462
BspFNI CGCG 1 cut(s) 452
BspPI GGATC 1 cut(s) 438
BspT104I TTCGAA 1 cut(s) 150
BsrGI TGTACA 1 cut(s) 545
BsrI ACTGG 1 cut(s) 347
BssMI GATC 1 cut(s) 443
Bst4CI ACNGT 1 cut(s) 502
BstAUI TGTACA 1 cut(s) 545
BstBI TTCGAA 1 cut(s) 150
BstDEI CTNAG 3 cut(s) 135, 217, 470
BstFNI CGCG 1 cut(s) 452
BstKTI GATC 1 cut(s) 446
BstMBI GATC 1 cut(s) 443
BstMWI GCNNNNNNNGC 1 cut(s) 471
BstUI CGCG 1 cut(s) 452
BstV1I GCAGC 2 cut(s) 137, 345
BstV2I GAAGAC 1 cut(s) 345
BstX2I RGATCY 1 cut(s) 443
BstXI CCANNNNNNTGG 1 cut(s) 103
BstYI RGATCY 1 cut(s) 443
BtsI GCAGTG 1 cut(s) 127
BtsIMutI CAGTG 1 cut(s) 127
Csp6I GTAC 3 cut(s) 184, 225, 546
CviJI RGCY 5 cut(s) 128, 216, 346, 358, 465
CviKI_1 RGCY 5 cut(s) 128, 216, 346, 358, 465
CviQI GTAC 3 cut(s) 184, 225, 546
DdeI CTNAG 3 cut(s) 135, 217, 470
DpnI GATC 1 cut(s) 445
DpnII GATC 1 cut(s) 443
Eco57I CTGAAG 1 cut(s) 273
FaiI YATR 6 cut(s) 6, 63, 205, 317, 457, 459
FaqI GGGAC 1 cut(s) 121
Fnu4HI GCNGC 2 cut(s) 126, 359
Fsp4HI GCNGC 2 cut(s) 126, 359
FspBI CTAG 2 cut(s) 111, 362
GluI GCNGC 2 cut(s) 126, 359
HinfI GANTC 4 cut(s) 172, 191, 420, 515
Hpy166II GTNNAC 3 cut(s) 186, 505, 546
Hpy188I TCNGA 1 cut(s) 471
Hpy188III TCNNGA 4 cut(s) 176, 279, 371, 424
Hpy8I GTNNAC 3 cut(s) 186, 505, 546
HpyAV CCTTC 2 cut(s) 102, 248
HpyCH4III ACNGT 1 cut(s) 502
HpyCH4IV ACGT 1 cut(s) 542
HpyCH4V TGCA 4 cut(s) 78, 86, 125, 157
HpyF10VI GCNNNNNNNGC 1 cut(s) 471
HpyF3I CTNAG 3 cut(s) 135, 217, 470
HpySE526I ACGT 1 cut(s) 542
Kzo9I GATC 1 cut(s) 443
LpnPI CCDG 8 cut(s) 56, 80, 122, 264, 328, 336, 454, 547
Lsp1109I GCAGC 2 cut(s) 137, 345
MaeI CTAG 2 cut(s) 111, 362
MaeII ACGT 1 cut(s) 542
MalI GATC 1 cut(s) 445
MboI GATC 1 cut(s) 443
MboII GAAGA 5 cut(s) 176, 322, 347, 350, 505
MflI RGATCY 1 cut(s) 443
MluCI AATT 4 cut(s) 16, 80, 286, 476
MlyI GAGTC 1 cut(s) 200
MnlI CCTC 4 cut(s) 202, 206, 359, 455
MroXI GAANNNNTTC 1 cut(s) 171
Mva1269I GAATGC 1 cut(s) 146
MvnI CGCG 1 cut(s) 452
MwoI GCNNNNNNNGC 1 cut(s) 471
NdeII GATC 1 cut(s) 443
NspV TTCGAA 1 cut(s) 150
PctI GAATGC 1 cut(s) 146
PdmI GAANNNNTTC 1 cut(s) 171
PfeI GAWTC 3 cut(s) 172, 420, 515
PkrI GCNGC 2 cut(s) 127, 360
PleI GAGTC 1 cut(s) 199
PpsI GAGTC 1 cut(s) 199
PsuI RGATCY 1 cut(s) 443
RsaI GTAC 3 cut(s) 185, 226, 547
RsaNI GTAC 3 cut(s) 184, 225, 546
SatI GCNGC 2 cut(s) 126, 359
Sau3AI GATC 1 cut(s) 443
SchI GAGTC 1 cut(s) 200
SetI ASST 9 cut(s) 25, 94, 130, 141, 226, 241, 360, 370, 545
SfuI TTCGAA 1 cut(s) 150
SmlI CTYRAG 2 cut(s) 424, 487
SmoI CTYRAG 2 cut(s) 424, 487
Sse9I AATT 4 cut(s) 16, 80, 286, 476
SsiI CCGC 1 cut(s) 413
SspMI CTAG 2 cut(s) 111, 362
TaaI ACNGT 1 cut(s) 502
TaiI ACGT 1 cut(s) 545
TaqI TCGA 2 cut(s) 150, 177
TasI AATT 4 cut(s) 16, 80, 286, 476
TatI WGTACW 2 cut(s) 183, 545
TfiI GAWTC 3 cut(s) 172, 420, 515
TscAI CASTG 1 cut(s) 127
TseI GCWGC 2 cut(s) 125, 358
TspDTI ATGAA 2 cut(s) 50, 332
TspGWI ACGGA 1 cut(s) 242
TspRI CASTG 1 cut(s) 127
XapI RAATTY 1 cut(s) 80
XcmI CCANNNNNNNNNTGG 1 cut(s) 455
XmnI GAANNNNTTC 1 cut(s) 171
XspI CTAG 2 cut(s) 111, 362
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.