Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr10

Orthogroup ID

OG0003937

Physical Location & Seq

Genomic Coordinates Reverse (-)

11916806 .. 11919181

Gene Structure 2376 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD10G1080800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 570 bp

ATGGGAACTAAGGAAAGCAGTGCACCTTCAACTCAGGTTGTGGCATTCGAAATGCAAAAGAAAGAAGAACTGATTCTCGATGAGTACACGGAGTCATTGACAATATACGAGGGGGGCTCAGTAGGTACGGATTTCGTAGGTAAAAGAGTTGCTGAAGGCAAAAAGACAACTTGTATTTCTGGAAATAATTGTGATGGTGCTTCTCAAAGAGGTGAGGACTCATCAGACAAGAGCGGTGGAACTAGCCGAGAAGATTATGAACAGAGAATGGAAAGAAGAAGACTGGCTAACAGGGAAGCTGCTAGGAGGTCAAGAATACGCAGACAGCAAGAATGTGAGAAACTACAAGCAACCGCAGAGATTCTTGAGAGCGAGATTGCCCAGATCCCACGCGATATATGGAGGCTTTCTGAGCAAATTGAGAAACTCAGGGAAGAAAACGACAGCATATTTGATGAGCTAGAGAAGAAGTATGGTGCAGATGCAGTTTCTGATCTGAGAGCTGTGAAGGACTCTTTGGAAGGTAAAGGCAAAGACACTGACCCAAAGACGCCGAGCAGAGACAGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MFMR MFMR_assoc bZIP_1

Protein Analysis

190

Amino Acids

21.25

Weight (kDa)

5.0

Isoelectric Point (pI)

58.1

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
bZIP_1	PF00170	88 - 147	2e-11	bZIP transcription factor
bZIP_2	PF07716	89 - 129	2.7e-06	Basic region leucine zipper

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003937)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g08260 FvH4_2g08260 FvH4_2g08260 FvH4_2g08260
malus_domestica	MD10G1080800.v1.1
prunus_persica	Prupe.8G102100_v2.0.a1 Prupe.8G102100_v2.0.a1 Prupe.8G102100_v2.0.a1 Prupe.8G102100_v2.0.a1 Prupe.8G102100_v2.0.a1 Prupe.8G102100_v2.0.a1 Prupe.8G102100_v2.0.a1 Prupe.8G102100_v2.0.a1 Prupe.8G102100_v2.0.a1 Prupe.8G102100_v2.0.a1 Prupe.8G102100_v2.0.a1 Prupe.8G102100_v2.0.a1 Prupe.8G102100_v2.0.a1 Prupe.8G102100_v2.0.a1 Prupe.8G102100_v2.0.a1 Prupe.8G102100_v2.0.a1
pyrus_communis	pycom10g06400
rosa_chinensis	RchiOBHm_Chr6g0263141
rosa_laevigata	RLG00000014369
rosa_multiflora	Rmu_sc0015149.1_g000003 Rmu_sc0039118.1_g000001
rosa_roxburghii	Rroxscaffold_176G00430940 Rroxscaffold_7G00204630
rosa_rugosa	Rorug06G0003800
rosa_samantha	Rh6AG122900 Rh6BG117900 Rh6CG116100 Rh6DG104600
rosa_wichuraiana	Rw6G010560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	234
AccII	CGCG	1 cut(s)	393
AciI	CCGC	2 cut(s)	234, 354
AclWI	GGATC	1 cut(s)	379
AcuI	CTGAAG	1 cut(s)	174
AcyI	GRCGYC	1 cut(s)	551
AfaI	GTAC	2 cut(s)	86, 127
AgsI	TTSAA	1 cut(s)	30
AjuI	GAANNNNNNNTTGG	2 cut(s)	500, 532
AluBI	AGCT	4 cut(s)	299, 460, 503, 567
AluI	AGCT	4 cut(s)	299, 460, 503, 567
Alw21I	GWGCWC	1 cut(s)	25
Alw26I	GTCTC	1 cut(s)	555
Alw44I	GTGCAC	1 cut(s)	21
AlwI	GGATC	1 cut(s)	379
AlwNI	CAGNNNCTG	1 cut(s)	491
ApaLI	GTGCAC	1 cut(s)	21
ApeKI	GCWGC	1 cut(s)	299
ArsI	GACNNNNNNTTYG	2 cut(s)	434, 466
Asp700I	GAANNNNTTC	1 cut(s)	72
AsuHPI	GGTGA	1 cut(s)	224
AsuII	TTCGAA	1 cut(s)	48
BaeGI	GKGCMC	1 cut(s)	25
BanII	GRGCYC	1 cut(s)	119
BbsI	GAAGAC	1 cut(s)	286
Bbv12I	GWGCWC	1 cut(s)	25
BbvI	GCAGC	1 cut(s)	286
BccI	CCATC	1 cut(s)	188
BcoDI	GTCTC	1 cut(s)	555
BfaI	CTAG	3 cut(s)	243, 303, 461
BisI	GCNGC	1 cut(s)	300
BlsI	GCNGC	1 cut(s)	301
BmsI	GCATC	1 cut(s)	472
BpiI	GAAGAC	1 cut(s)	286
BplI	GAGNNNNNCTC	2 cut(s)	101, 133
Bpu14I	TTCGAA	1 cut(s)	48
BpuEI	CTTGAG	1 cut(s)	386
BsaHI	GRCGYC	1 cut(s)	551
Bse1I	ACTGG	1 cut(s)	288
BseMII	CTCAG	5 cut(s)	47, 132, 402, 442, 488
BseNI	ACTGG	1 cut(s)	288
BseSI	GKGCMC	1 cut(s)	25
BseXI	GCAGC	1 cut(s)	286
BsgI	GTGCAG	1 cut(s)	498
Bsh1236I	CGCG	1 cut(s)	393
BsiHKAI	GWGCWC	1 cut(s)	25
BsmAI	GTCTC	1 cut(s)	555
BsmI	GAATGC	1 cut(s)	44
Bsp119I	TTCGAA	1 cut(s)	48
Bsp1286I	GDGCHC	2 cut(s)	25, 119
Bsp143I	GATC	2 cut(s)	384, 493
BspACI	CCGC	2 cut(s)	234, 354
BspCNI	CTCAG	5 cut(s)	46, 131, 403, 441, 489
BspFNI	CGCG	1 cut(s)	393
BspPI	GGATC	1 cut(s)	379
BspT104I	TTCGAA	1 cut(s)	48
BsrBI	CCGCTC	1 cut(s)	234
BsrI	ACTGG	1 cut(s)	288
BssMI	GATC	2 cut(s)	384, 493
BssNI	GRCGYC	1 cut(s)	551
BstACI	GRCGYC	1 cut(s)	551
BstBI	TTCGAA	1 cut(s)	48
BstDEI	CTNAG	6 cut(s)	9, 33, 118, 411, 428, 497
BstFNI	CGCG	1 cut(s)	393
BstKTI	GATC	2 cut(s)	387, 496
BstMAI	GTCTC	1 cut(s)	555
BstMBI	GATC	2 cut(s)	384, 493
BstMWI	GCNNNNNNNGC	2 cut(s)	412, 564
BstSLI	GKGCMC	1 cut(s)	25
BstUI	CGCG	1 cut(s)	393
BstV1I	GCAGC	1 cut(s)	286
BstV2I	GAAGAC	1 cut(s)	286
BstX2I	RGATCY	1 cut(s)	384
BstYI	RGATCY	1 cut(s)	384
BtsI	GCAGTG	1 cut(s)	25
BtsIMutI	CAGTG	2 cut(s)	25, 537
CaiI	CAGNNNCTG	1 cut(s)	491
CseI	GACGC	1 cut(s)	559
Csp6I	GTAC	2 cut(s)	85, 126
CspCI	CAANNNNNGTGG	2 cut(s)	217, 252
CviJI	RGCY	8 cut(s)	117, 246, 287, 299, 406, 460, 503, 567
CviKI_1	RGCY	8 cut(s)	117, 246, 287, 299, 406, 460, 503, 567
CviQI	GTAC	2 cut(s)	85, 126
DdeI	CTNAG	6 cut(s)	9, 33, 118, 411, 428, 497
DpnI	GATC	2 cut(s)	386, 495
DpnII	GATC	2 cut(s)	384, 493
Eco24I	GRGCYC	1 cut(s)	119
Eco57I	CTGAAG	1 cut(s)	174
EcoT38I	GRGCYC	1 cut(s)	119
FaiI	YATR	6 cut(s)	106, 258, 398, 400, 449, 474
Fnu4HI	GCNGC	1 cut(s)	300
FriOI	GRGCYC	1 cut(s)	119
Fsp4HI	GCNGC	1 cut(s)	300
FspBI	CTAG	3 cut(s)	243, 303, 461
GluI	GCNGC	1 cut(s)	300
HgaI	GACGC	1 cut(s)	559
Hin1I	GRCGYC	1 cut(s)	551
HinfI	GANTC	5 cut(s)	73, 92, 218, 361, 512
HphI	GGTGA	1 cut(s)	224
Hpy166II	GTNNAC	2 cut(s)	23, 87
Hpy188I	TCNGA	4 cut(s)	226, 412, 493, 498
Hpy188III	TCNNGA	4 cut(s)	77, 180, 312, 365
Hpy8I	GTNNAC	2 cut(s)	23, 87
HpyAV	CCTTC	4 cut(s)	36, 149, 502, 515
HpyCH4V	TGCA	4 cut(s)	23, 55, 479, 485
HpyF10VI	GCNNNNNNNGC	2 cut(s)	412, 564
HpyF3I	CTNAG	6 cut(s)	9, 33, 118, 411, 428, 497
Hsp92I	GRCGYC	1 cut(s)	551
Kzo9I	GATC	2 cut(s)	384, 493
LpnPI	CCDG	6 cut(s)	20, 165, 269, 277, 395, 415
Lsp1109I	GCAGC	1 cut(s)	286
LweI	GCATC	1 cut(s)	472
MaeI	CTAG	3 cut(s)	243, 303, 461
MalI	GATC	2 cut(s)	386, 495
MbiI	CCGCTC	1 cut(s)	234
MboI	GATC	2 cut(s)	384, 493
MboII	GAAGA	6 cut(s)	77, 263, 288, 291, 446, 478
MflI	RGATCY	1 cut(s)	384
MhlI	GDGCHC	2 cut(s)	25, 119
MluCI	AATT	2 cut(s)	187, 417
MlyI	GAGTC	3 cut(s)	101, 212, 506
MnlI	CCTC	5 cut(s)	103, 203, 208, 300, 396
MroXI	GAANNNNTTC	1 cut(s)	72
MspA1I	CMGCKG	1 cut(s)	567
Mva1269I	GAATGC	1 cut(s)	44
MvnI	CGCG	1 cut(s)	393
MwoI	GCNNNNNNNGC	2 cut(s)	412, 564
NdeII	GATC	2 cut(s)	384, 493
NmeAIII	GCCGAG	1 cut(s)	272
NspV	TTCGAA	1 cut(s)	48
PctI	GAATGC	1 cut(s)	44
PdmI	GAANNNNTTC	1 cut(s)	72
PfeI	GAWTC	2 cut(s)	73, 361
PkrI	GCNGC	1 cut(s)	301
PleI	GAGTC	3 cut(s)	100, 212, 506
PpsI	GAGTC	3 cut(s)	100, 212, 506
PstNI	CAGNNNCTG	1 cut(s)	491
PsuI	RGATCY	1 cut(s)	384
PvuII	CAGCTG	1 cut(s)	567
RsaI	GTAC	2 cut(s)	86, 127
RsaNI	GTAC	2 cut(s)	85, 126
SatI	GCNGC	1 cut(s)	300
Sau3AI	GATC	2 cut(s)	384, 493
SchI	GAGTC	3 cut(s)	101, 212, 506
SduI	GDGCHC	2 cut(s)	25, 119
SfaNI	GCATC	1 cut(s)	472
SfuI	TTCGAA	1 cut(s)	48
SmlI	CTYRAG	1 cut(s)	365
SmoI	CTYRAG	1 cut(s)	365
Sse9I	AATT	2 cut(s)	187, 417
SsiI	CCGC	2 cut(s)	234, 354
SspMI	CTAG	3 cut(s)	243, 303, 461
TaqI	TCGA	2 cut(s)	48, 78
TasI	AATT	2 cut(s)	187, 417
TatI	WGTACW	1 cut(s)	84
TfiI	GAWTC	2 cut(s)	73, 361
TscAI	CASTG	2 cut(s)	25, 544
TseI	GCWGC	1 cut(s)	299
TspDTI	ATGAA	1 cut(s)	273
TspGWI	ACGGA	2 cut(s)	104, 143
TspRI	CASTG	2 cut(s)	25, 544
VneI	GTGCAC	1 cut(s)	21
XcmI	CCANNNNNNNNNTGG	1 cut(s)	396
XmnI	GAANNNNTTC	1 cut(s)	72
XspI	CTAG	3 cut(s)	243, 303, 461

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.