Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0010139

Physical Location & Seq

Genomic Coordinates Forward (+)

9614757 .. 9617483

Gene Structure 2727 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g10990.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1179 bp

ATGATGGAAGGTTCGTCGTCTGTAACTCCCTTGCTATTCCGCAACCTTATAACCTCCCTCTTCATATTAGCAGAGACTTCCATTTCCAGCTTGACCCAAAAACACAAAACCCTAGAACTCATACGCTACGTTTTCATCTCTTCCTTCCTCTTTTTCCTGCGTTTACTTCTTTCTTTAAACCCTAGGTCGACCAAGAATAATGAATCCTCCTTGTACGAGGCCGACTGTAGTAGAAGAAATCACAAGTTTATGCCCGCTGCTAACGCCGGAGGGGACGACAGCGACACGGCTATAGCTCGAGCACTTTCGCAGCTACTGTCGATCGTCAATGATATCCCGGTAAGCTCCCGCAAGTATCAAGCTGTTCGGTCTTTAGCGGAAAACGTCATCCATGACAACCAGCGAGAGGGCGTGGAGGCTTTGCGTCAAGTGAATCGCACGGTTTTGTCGGCAGCGTTTTCAAGGACTCTTAGCCAGCTTGAAGCCGCTGCAACTGTCGAACAGCAGCACCACGGCGGAGGCGGCGATGGTGATATTGGTGGTTTAGATACTGGTCATCATCATCACTGGATAGTAAGGGCTGTTCGGTCCGTTGCAGATGTGGTTTGGACAAAGAGGGTTAGCAGCGGCGGGTCGAGAAGCTCGGCGGAGAAACTAGCGGCGGAGCTGCTCTGGTTGGCTGAGACGATGGCGAGTTGTGGCTTTGCTCAAGAGTCTGTGAGGAGATGGGCGTCCGCTTCTATATTGGCTCGCCTCTCTCTTTCAGCCGAGCCCCGCCTGCAAGCCTCCTTAGTCAAGCTTTCAGCGTTGTTGTTAAAGTATGCCAAAGACATGGGAGTAAATGAAGGTATTGATGATGATACTGAGAGCAAGAAAGAGCAGCAAAAAAGAAACGAAGCAAAGATGCAGATGCAGATGTTGATGTTGTGGATTCCATTGCTGTGCATAGCAAGCAATGGCACTGATGTGCCTGTTTTGAGCGTCGGCGAAAGGGCTGAGCTTGAGAGAGTAATGGAAGAGACCATAGAAACGTTGGAAGAAGAAGATCAAGAGGGAGTACTATCCTTGTGGCTCCACCACTTCACATATTGCTCGTCTTCTGATTGGCCAAATCTACATGCCTCATATGCTCGATGGTGTAACGCATCGCGCAAGCAGTTTTTAATTCACAATTCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

393

Amino Acids

43.58

Weight (kDa)

6.24

Isoelectric Point (pI)

50.22

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010139)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G64230
fragaria_vesca	FvH4_2g10990 FvH4_2g10991
malus_domestica	MD05G1044100.v1.1 MD10G1051300.v1.1
prunus_persica	Prupe.8G059500_v2.0.a1 Prupe.8G059500_v2.0.a1 Prupe.8G059500_v2.0.a1
pyrus_communis	pycom05g03680 pycom10g03610
rosa_chinensis	RchiOBHm_Chr6g0269191
rosa_laevigata	RLG00000013873
rosa_multiflora	Rmu_sc0001891.1_g000055 Rmu_ssc0000381.1_g000001
rosa_roxburghii	Rroxscaffold_7G00198960
rosa_rugosa	Rorug06G0045800
rosa_samantha	Rh6AG166100 Rh6BG171600 Rh6CG165200 Rh6DG156800
rosa_wichuraiana	Rw6G014340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	50
AccI	GTMKAC	1 cut(s)	188
AccII	CGCG	1 cut(s)	1150
AclI	AACGTT	1 cut(s)	1031
AcoI	YGGCCR	1 cut(s)	1106
AcyI	GRCGYC	1 cut(s)	731
AfaI	GTAC	2 cut(s)	215, 1059
AfiI	CCNNNNNNNGG	1 cut(s)	406
AgsI	TTSAA	2 cut(s)	462, 482
AleI	CACNNNNGTG	1 cut(s)	965
Alw21I	GWGCWC	1 cut(s)	304
Alw26I	GTCTC	3 cut(s)	68, 677, 1013
AlwNI	CAGNNNCTG	1 cut(s)	316
Ama87I	CYCGRG	1 cut(s)	297
AoxI	GGCC	2 cut(s)	219, 1106
ApeKI	GCWGC	8 cut(s)	257, 310, 452, 488, 505, 624, 667, 880
AspA2I	CCTAGG	1 cut(s)	182
AspLEI	GCGC	1 cut(s)	1152
AspS9I	GGNCC	1 cut(s)	588
AsuC2I	CCSGG	1 cut(s)	338
AsuHPI	GGTGA	1 cut(s)	542
AvaI	CYCGRG	1 cut(s)	297
AvaII	GGWCC	1 cut(s)	588
AvrII	CCTAGG	1 cut(s)	182
BalI	TGGCCA	1 cut(s)	1108
BanII	GRGCYC	1 cut(s)	774
BbsI	GAAGAC	1 cut(s)	1089
Bbv12I	GWGCWC	1 cut(s)	304
BbvI	GCAGC	8 cut(s)	244, 322, 464, 475, 517, 636, 654, 892
BccI	CCATC	4 cut(s)	521, 682, 720, 1128
BceAI	ACGGC	2 cut(s)	303, 529
BcnI	CCSGG	1 cut(s)	338
BcoDI	GTCTC	3 cut(s)	68, 677, 1013
BfaI	CTAG	3 cut(s)	113, 183, 656
BfmI	CTRYAG	2 cut(s)	226, 291
BlnI	CCTAGG	1 cut(s)	182
BlpI	GCTNAGC	1 cut(s)	996
BmcAI	AGTACT	1 cut(s)	1059
Bme1390I	CCNGG	1 cut(s)	338
Bme18I	GGWCC	1 cut(s)	588
BmeT110I	CYCGRG	1 cut(s)	297
BmgT120I	GGNCC	1 cut(s)	588
BmiI	GGNNCC	1 cut(s)	1073
BmrFI	CCNGG	1 cut(s)	338
BmsI	GCATC	3 cut(s)	894, 900, 1154
BpiI	GAAGAC	1 cut(s)	1089
Bpu1102I	GCTNAGC	1 cut(s)	996
BpuEI	CTTGAG	2 cut(s)	693, 1022
BpuMI	CCSGG	1 cut(s)	338
BsaHI	GRCGYC	1 cut(s)	731
BsaI	GGTCTC	1 cut(s)	1013
BsaJI	CCNNGG	2 cut(s)	182, 511
Bsc4I	CCNNNNNNNGG	1 cut(s)	406
Bse1I	ACTGG	2 cut(s)	556, 572
Bse3DI	GCAATG	2 cut(s)	935, 961
BseDI	CCNNGG	2 cut(s)	182, 511
BseGI	GGATG	1 cut(s)	387
BseLI	CCNNNNNNNGG	1 cut(s)	406
BseMI	GCAATG	2 cut(s)	935, 961
BseMII	CTCAG	3 cut(s)	672, 855, 987
BseNI	ACTGG	2 cut(s)	556, 572
BseRI	GAGGAG	1 cut(s)	736
BseXI	GCAGC	8 cut(s)	244, 322, 464, 475, 517, 636, 654, 892
Bsh1236I	CGCG	1 cut(s)	1150
Bsh1285I	CGRYCG	1 cut(s)	324
BshFI	GGCC	2 cut(s)	221, 1108
BsiEI	CGRYCG	1 cut(s)	324
BsiHKAI	GWGCWC	1 cut(s)	304
BsiHKCI	CYCGRG	1 cut(s)	297
BsiSI	CCGG	2 cut(s)	267, 338
BslFI	GGGAC	1 cut(s)	287
BslI	CCNNNNNNNGG	1 cut(s)	406
BsmAI	GTCTC	3 cut(s)	68, 677, 1013
BsmBI	CGTCTC	1 cut(s)	677
BsmFI	GGGAC	1 cut(s)	287
BsnI	GGCC	2 cut(s)	221, 1108
Bso31I	GGTCTC	1 cut(s)	1013
BsoBI	CYCGRG	1 cut(s)	297
Bsp1286I	GDGCHC	2 cut(s)	304, 774
Bsp143I	GATC	2 cut(s)	321, 1045
Bsp1720I	GCTNAGC	1 cut(s)	996
BspANI	GGCC	2 cut(s)	221, 1108
BspCNI	CTCAG	3 cut(s)	673, 856, 988
BspFNI	CGCG	1 cut(s)	1150
BspLI	GGNNCC	1 cut(s)	1073
BspTNI	GGTCTC	1 cut(s)	1013
BsrDI	GCAATG	2 cut(s)	935, 961
BsrI	ACTGG	2 cut(s)	556, 572
BssECI	CCNNGG	2 cut(s)	182, 511
BssMI	GATC	2 cut(s)	321, 1045
BssNI	GRCGYC	1 cut(s)	731
BssT1I	CCWWGG	1 cut(s)	182
Bst4CI	ACNGT	4 cut(s)	227, 318, 442, 496
Bst6I	CTCTTC	3 cut(s)	65, 145, 1011
BstACI	GRCGYC	1 cut(s)	731
BstC8I	GCNNGC	7 cut(s)	255, 476, 751, 779, 783, 952, 1154
BstDEI	CTNAG	5 cut(s)	470, 681, 790, 864, 996
BstDSI	CCRYGG	1 cut(s)	511
BstF5I	GGATG	1 cut(s)	387
BstFNI	CGCG	1 cut(s)	1150
BstHHI	GCGC	1 cut(s)	1152
BstKTI	GATC	2 cut(s)	324, 1048
BstMAI	GTCTC	3 cut(s)	68, 677, 1013
BstMBI	GATC	2 cut(s)	321, 1045
BstMCI	CGRYCG	1 cut(s)	324
BstMWI	GCNNNNNNNGC	5 cut(s)	263, 522, 778, 951, 1127
BstNSI	RCATGY	1 cut(s)	1121
BstSCI	CCNGG	1 cut(s)	336
BstSFI	CTRYAG	2 cut(s)	226, 291
BstUI	CGCG	1 cut(s)	1150
BstV1I	GCAGC	8 cut(s)	244, 322, 464, 475, 517, 636, 654, 892
BstV2I	GAAGAC	1 cut(s)	1089
BstXI	CCANNNNNNTGG	1 cut(s)	832
BsuRI	GGCC	2 cut(s)	221, 1108
BtgI	CCRYGG	1 cut(s)	511
BtgZI	GCGATG	2 cut(s)	540, 1131
BtsCI	GGATG	1 cut(s)	387
BtsIMutI	CAGTG	2 cut(s)	565, 960
Cac8I	GCNNGC	7 cut(s)	255, 476, 751, 779, 783, 952, 1154
CaiI	CAGNNNCTG	1 cut(s)	316
CfoI	GCGC	1 cut(s)	1152
Cfr13I	GGNCC	1 cut(s)	588
CpoI	CGGWCCG	1 cut(s)	588
CseI	GACGC	3 cut(s)	413, 720, 970
Csp6I	GTAC	2 cut(s)	214, 1058
CspI	CGGWCCG	1 cut(s)	588
CviAII	CATG	3 cut(s)	392, 832, 1118
CviQI	GTAC	2 cut(s)	214, 1058
DdeI	CTNAG	5 cut(s)	470, 681, 790, 864, 996
DpnI	GATC	2 cut(s)	323, 1047
DpnII	GATC	2 cut(s)	321, 1045
DraI	TTTAAA	1 cut(s)	177
EaeI	YGGCCR	1 cut(s)	1106
Eam1104I	CTCTTC	3 cut(s)	65, 145, 1011
EarI	CTCTTC	3 cut(s)	65, 145, 1011
EciI	GGCGGA	3 cut(s)	531, 662, 677
Eco130I	CCWWGG	1 cut(s)	182
Eco24I	GRGCYC	1 cut(s)	774
Eco31I	GGTCTC	1 cut(s)	1013
Eco32I	GATATC	1 cut(s)	334
Eco47I	GGWCC	1 cut(s)	588
Eco88I	CYCGRG	1 cut(s)	297
EcoRV	GATATC	1 cut(s)	334
EcoT14I	CCWWGG	1 cut(s)	182
EcoT38I	GRGCYC	1 cut(s)	774
ErhI	CCWWGG	1 cut(s)	182
Esp3I	CGTCTC	1 cut(s)	677
FaeI	CATG	3 cut(s)	395, 835, 1121
FaqI	GGGAC	1 cut(s)	287
FatI	CATG	3 cut(s)	391, 831, 1117
FauI	CCCGC	4 cut(s)	262, 356, 623, 782
FauNDI	CATATG	1 cut(s)	1126
FblI	GTMKAC	1 cut(s)	188
FokI	GGATG	1 cut(s)	374
FriOI	GRGCYC	1 cut(s)	774
FspBI	CTAG	3 cut(s)	113, 183, 656
GlaI	GCGC	1 cut(s)	1151
HaeIII	GGCC	2 cut(s)	221, 1108
HapII	CCGG	2 cut(s)	267, 338
HgaI	GACGC	3 cut(s)	413, 720, 970
HhaI	GCGC	1 cut(s)	1152
Hin1I	GRCGYC	1 cut(s)	731
Hin1II	CATG	3 cut(s)	395, 835, 1121
Hin6I	GCGC	1 cut(s)	1150
HinP1I	GCGC	1 cut(s)	1150
HincII	GTYRAC	1 cut(s)	189
HindII	GTYRAC	1 cut(s)	189
HindIII	AAGCTT	1 cut(s)	797
HinfI	GANTC	5 cut(s)	203, 433, 466, 713, 931
HpaII	CCGG	2 cut(s)	267, 338
HphI	GGTGA	1 cut(s)	542
Hpy166II	GTNNAC	2 cut(s)	164, 189
Hpy188I	TCNGA	1 cut(s)	1102
Hpy188III	TCNNGA	3 cut(s)	636, 710, 1049
Hpy8I	GTNNAC	2 cut(s)	164, 189
Hpy99I	CGWCG	2 cut(s)	19, 986
HpyAV	CCTTC	2 cut(s)	154, 839
HpyCH4III	ACNGT	4 cut(s)	227, 318, 442, 496
HpyCH4IV	ACGT	3 cut(s)	129, 384, 1031
HpyCH4V	TGCA	6 cut(s)	491, 596, 781, 907, 913, 945
HpyF10VI	GCNNNNNNNGC	5 cut(s)	263, 522, 778, 951, 1127
HpyF3I	CTNAG	5 cut(s)	470, 681, 790, 864, 996
HpySE526I	ACGT	3 cut(s)	129, 384, 1031
Hsp92I	GRCGYC	1 cut(s)	731
Hsp92II	CATG	3 cut(s)	395, 835, 1121
HspAI	GCGC	1 cut(s)	1150
Kzo9I	GATC	2 cut(s)	321, 1045
LmnI	GCTCC	3 cut(s)	350, 664, 1077
Lsp1109I	GCAGC	8 cut(s)	244, 322, 464, 475, 517, 636, 654, 892
LweI	GCATC	3 cut(s)	894, 900, 1154
MaeI	CTAG	3 cut(s)	113, 183, 656
MaeII	ACGT	3 cut(s)	129, 384, 1031
MaeIII	GTNAC	2 cut(s)	22, 1139
MalI	GATC	2 cut(s)	323, 1047
MboI	GATC	2 cut(s)	321, 1045
MboII	GAAGA	8 cut(s)	52, 132, 246, 1028, 1049, 1052, 1055, 1089
MhlI	GDGCHC	2 cut(s)	304, 774
MlsI	TGGCCA	1 cut(s)	1108
MluCI	AATT	2 cut(s)	1164, 1171
MluNI	TGGCCA	1 cut(s)	1108
MlyI	GAGTC	2 cut(s)	460, 722
MmeI	TCCRAC	1 cut(s)	1014
Mox20I	TGGCCA	1 cut(s)	1108
MscI	TGGCCA	1 cut(s)	1108
MseI	TTAA	3 cut(s)	176, 815, 1163
MslI	CAYNNNNRTG	2 cut(s)	940, 965
Msp20I	TGGCCA	1 cut(s)	1108
MspA1I	CMGCKG	3 cut(s)	257, 488, 627
MspI	CCGG	2 cut(s)	267, 338
MspR9I	CCNGG	1 cut(s)	338
MvnI	CGCG	1 cut(s)	1150
MwoI	GCNNNNNNNGC	5 cut(s)	263, 522, 778, 951, 1127
NciI	CCSGG	1 cut(s)	338
NdeI	CATATG	1 cut(s)	1126
NdeII	GATC	2 cut(s)	321, 1045
NlaIII	CATG	3 cut(s)	395, 835, 1121
NlaIV	GGNNCC	1 cut(s)	1073
NmeAIII	GCCGAG	2 cut(s)	623, 793
NspI	RCATGY	1 cut(s)	1121
OliI	CACNNNNGTG	1 cut(s)	965
PaeR7I	CTCGAG	1 cut(s)	297
PfeI	GAWTC	3 cut(s)	203, 433, 931
Ple19I	CGATCG	1 cut(s)	324
PleI	GAGTC	2 cut(s)	460, 721
PpsI	GAGTC	2 cut(s)	460, 721
PsiI	TTATAA	1 cut(s)	50
Psp1406I	AACGTT	1 cut(s)	1031
PspN4I	GGNNCC	1 cut(s)	1073
PspPI	GGNCC	1 cut(s)	588
PspXI	VCTCGAGB	1 cut(s)	297
PsrI	GAACNNNNNNTAC	2 cut(s)	567, 599
PstNI	CAGNNNCTG	1 cut(s)	316
PvuI	CGATCG	1 cut(s)	324
RsaI	GTAC	2 cut(s)	215, 1059
RsaNI	GTAC	2 cut(s)	214, 1058
RseI	CAYNNNNRTG	2 cut(s)	940, 965
Rsr2I	CGGWCCG	1 cut(s)	588
RsrII	CGGWCCG	1 cut(s)	588
SalI	GTCGAC	1 cut(s)	187
SaqAI	TTAA	3 cut(s)	176, 815, 1163
Sau3AI	GATC	2 cut(s)	321, 1045
Sau96I	GGNCC	1 cut(s)	588
ScaI	AGTACT	1 cut(s)	1059
SchI	GAGTC	2 cut(s)	460, 722
ScrFI	CCNGG	1 cut(s)	338
SduI	GDGCHC	2 cut(s)	304, 774
SfaNI	GCATC	3 cut(s)	894, 900, 1154
SfcI	CTRYAG	2 cut(s)	226, 291
Sfr274I	CTCGAG	1 cut(s)	297
SinI	GGWCC	1 cut(s)	588
SlaI	CTCGAG	1 cut(s)	297
SmiMI	CAYNNNNRTG	2 cut(s)	940, 965
SmlI	CTYRAG	3 cut(s)	297, 708, 1001
SmoI	CTYRAG	3 cut(s)	297, 708, 1001
Sse9I	AATT	2 cut(s)	1164, 1171
SspMI	CTAG	3 cut(s)	113, 183, 656
StyD4I	CCNGG	1 cut(s)	336
StyI	CCWWGG	1 cut(s)	182
TaaI	ACNGT	4 cut(s)	227, 318, 442, 496
TaiI	ACGT	3 cut(s)	132, 387, 1034
TaqI	TCGA	6 cut(s)	188, 298, 320, 498, 635, 1132
TaqII	GACCGA	2 cut(s)	357, 576
TasI	AATT	2 cut(s)	1164, 1171
TatI	WGTACW	1 cut(s)	1057
TauI	GCSGC	4 cut(s)	488, 525, 630, 662
TfiI	GAWTC	3 cut(s)	203, 433, 931
Tru1I	TTAA	3 cut(s)	176, 815, 1163
Tru9I	TTAA	3 cut(s)	176, 815, 1163
TscAI	CASTG	2 cut(s)	572, 967
TseI	GCWGC	8 cut(s)	257, 310, 452, 488, 505, 624, 667, 880
TspDTI	ATGAA	5 cut(s)	52, 124, 216, 858, 1164
TspGWI	ACGGA	1 cut(s)	580
TspRI	CASTG	2 cut(s)	572, 967
VpaK11BI	GGWCC	1 cut(s)	588
XceI	RCATGY	1 cut(s)	1121
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1030
XhoI	CTCGAG	1 cut(s)	297
XmaJI	CCTAGG	1 cut(s)	182
XmiI	GTMKAC	1 cut(s)	188
XspI	CTAG	3 cut(s)	113, 183, 656
ZrmI	AGTACT	1 cut(s)	1059

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.