Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0010139

Physical Location & Seq

Genomic Coordinates Reverse (-)

43361425 .. 43363463

Gene Structure 2039 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000013873

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1209 bp

ATGGAGAGTTCGTCGTCCATAACTCCTTTGCTTTTCCGCAACCTTATAACCTCCCTCTTCCTTTTGGCAGAGAATTCCATTTGCAGCTTGGCCCAAAAACACAAAGCCCTAGAACTCATACGCTGCGTTTTCGTCTCTTCCTTCCTCTTTTTGCTGCGTTTGCTTCTTTCATTAAACCCTAGGTCGACCAACAATAATGAATCCCCCTATTCCATCTTGTACGACTATAAAGACAAGCCTCCCAAGAAGGGTATTGGAGGAAGAAATCACAAGTATATGCCCGCAGCTATCAGCGGAGACGACGACGGCAGCGGCAGCGACACGGCTATAGCTCGAGCACTTTCGCAGCTACTGTCGATCGTCAATAATATCCCGGTAAGTTCCCGCAAGTACCAAGGTGTTCGATCTTTAGCGGAGAACGTCATCTATGACAACCAGAGAGAGGGCGTGGAGGCTTTGCGTCAAGTGAATCGGACGGTTCTGTCGGCAGCGTTTTCGAGGACTCTCAGCCAGCTTGAAGCCGCCGCAACTGTCGAACACCAGCAGGGCGGCGAGGGCGGCGGCGATGGTGACATTGATGGTTTGGATTCTGGCCATCATCATTGGATAGTACGGGCCGTTCGGTCCGTTGCGGGCGTGGTGTGGACGAAGGGGGTTAGCAGCGGCGGGTCGAGGAGCTCGGCGGAGAAGCTAGCGGCGGAGCTGCTCTGGTTGTCTGAGACGATGGCGGCTTGTGGCTTTGCTAAAGAGTCTGTGAGGAGATGGGCGTCAGCCTCTAGTTTGGCTCGCCTCTCTCTTTCAGTCGAGCCGCGCCTGCAGGCCTCCTTAGTCAAGATTACAGCATTGTTGTTGAAGTATGCTAAAGATATGGAAGTGGATGAAGATGATGATAATGAGAGCACAAAAGAGCAGCAAGAAAGAAAACAAGCAAAGATACAGATGCAGATGTTGGTGTTGTGGATTCCATTGCTGTGCACAGCCAGCAATGGCACTGATGTGCCTGTTTTGAGCATCAGCGAAAGGGCTGAGCTGGAGAGAGTACTGGAAGAGACCATAGAGAAGCTGGCAGAAGAAGATCAAGAGCGAGTTCTATCCTTGTGGCTCCACCAATTCACATATTGCTCCTCTTCTGATTGGCCCAATTTACATGCCTCGTATGCTCGCTGGTGTAATGCTTCGCGCAAGCACTTGCTAATTCACAATTCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

403

Amino Acids

44.46

Weight (kDa)

6.24

Isoelectric Point (pI)

50.43

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010139)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G64230
fragaria_vesca	FvH4_2g10990 FvH4_2g10991
malus_domestica	MD05G1044100.v1.1 MD10G1051300.v1.1
prunus_persica	Prupe.8G059500_v2.0.a1 Prupe.8G059500_v2.0.a1 Prupe.8G059500_v2.0.a1
pyrus_communis	pycom05g03680 pycom10g03610
rosa_chinensis	RchiOBHm_Chr6g0269191
rosa_laevigata	RLG00000013873
rosa_multiflora	Rmu_sc0001891.1_g000055 Rmu_ssc0000381.1_g000001
rosa_roxburghii	Rroxscaffold_7G00198960
rosa_rugosa	Rorug06G0045800
rosa_samantha	Rh6AG166100 Rh6BG171600 Rh6CG165200 Rh6DG156800
rosa_wichuraiana	Rw6G014340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	47
AasI	GACNNNNNNGTC	1 cut(s)	481
AccI	GTMKAC	1 cut(s)	185
AccII	CGCG	2 cut(s)	811, 1180
AcoI	YGGCCR	1 cut(s)	592
AcsI	RAATTY	1 cut(s)	73
AcyI	GRCGYC	1 cut(s)	767
AfaI	GTAC	4 cut(s)	221, 392, 612, 1041
AfiI	CCNNNNNNNGG	2 cut(s)	248, 442
AgsI	TTSAA	2 cut(s)	518, 853
AleI	CACNNNNGTG	1 cut(s)	995
Alw21I	GWGCWC	4 cut(s)	340, 680, 902, 977
Alw26I	GTCTC	4 cut(s)	139, 291, 713, 1043
Alw44I	GTGCAC	1 cut(s)	973
AlwNI	CAGNNNCTG	1 cut(s)	352
Ama87I	CYCGRG	1 cut(s)	333
AoxI	GGCC	5 cut(s)	90, 592, 615, 819, 1136
ApaLI	GTGCAC	1 cut(s)	973
ApoI	RAATTY	1 cut(s)	73
AspA2I	CCTAGG	1 cut(s)	179
AspLEI	GCGC	2 cut(s)	813, 1182
AspS9I	GGNCC	4 cut(s)	91, 615, 624, 1137
AsuC2I	CCSGG	1 cut(s)	374
AsuHPI	GGTGA	1 cut(s)	581
AsuNHI	GCTAGC	1 cut(s)	691
AvaI	CYCGRG	1 cut(s)	333
AvaII	GGWCC	1 cut(s)	624
AvrII	CCTAGG	1 cut(s)	179
BaeGI	GKGCMC	1 cut(s)	977
BalI	TGGCCA	1 cut(s)	594
BanII	GRGCYC	1 cut(s)	680
Bbv12I	GWGCWC	4 cut(s)	340, 680, 902, 977
BccI	CCATC	6 cut(s)	221, 560, 572, 603, 718, 756
BceAI	ACGGC	3 cut(s)	322, 339, 602
BcgI	CGANNNNNNTGC	2 cut(s)	477, 511
BcnI	CCSGG	1 cut(s)	374
BcoDI	GTCTC	4 cut(s)	139, 291, 713, 1043
BfaI	CTAG	4 cut(s)	110, 180, 692, 777
BfmI	CTRYAG	2 cut(s)	327, 815
BlnI	CCTAGG	1 cut(s)	179
BlpI	GCTNAGC	1 cut(s)	1026
BmcAI	AGTACT	1 cut(s)	1041
Bme1390I	CCNGG	1 cut(s)	374
Bme18I	GGWCC	1 cut(s)	624
BmeT110I	CYCGRG	1 cut(s)	333
BmgT120I	GGNCC	4 cut(s)	91, 615, 624, 1137
BmiI	GGNNCC	1 cut(s)	1103
BmrFI	CCNGG	1 cut(s)	374
BmsI	GCATC	2 cut(s)	930, 1020
BmtI	GCTAGC	1 cut(s)	695
BpmI	CTGGAG	1 cut(s)	1052
Bpu1102I	GCTNAGC	1 cut(s)	1026
BpuMI	CCSGG	1 cut(s)	374
BsaHI	GRCGYC	1 cut(s)	767
BsaI	GGTCTC	1 cut(s)	1043
BsaJI	CCNNGG	2 cut(s)	179, 394
BsaXI	ACNNNNNCTCC	1 cut(s)	26
Bsc4I	CCNNNNNNNGG	2 cut(s)	248, 442
Bse1I	ACTGG	1 cut(s)	1047
Bse3DI	GCAATG	2 cut(s)	965, 991
BseDI	CCNNGG	2 cut(s)	179, 394
BseGI	GGATG	1 cut(s)	883
BseLI	CCNNNNNNNGG	2 cut(s)	248, 442
BseMI	GCAATG	2 cut(s)	965, 991
BseMII	CTCAG	3 cut(s)	520, 708, 1017
BseNI	ACTGG	1 cut(s)	1047
BseRI	GAGGAG	3 cut(s)	688, 772, 1114
BseSI	GKGCMC	1 cut(s)	977
Bsh1236I	CGCG	2 cut(s)	811, 1180
Bsh1285I	CGRYCG	1 cut(s)	360
BshFI	GGCC	5 cut(s)	92, 594, 617, 821, 1138
BsiEI	CGRYCG	1 cut(s)	360
BsiHKAI	GWGCWC	4 cut(s)	340, 680, 902, 977
BsiHKCI	CYCGRG	1 cut(s)	333
BsiSI	CCGG	1 cut(s)	374
BslI	CCNNNNNNNGG	2 cut(s)	248, 442
BsmAI	GTCTC	4 cut(s)	139, 291, 713, 1043
BsmBI	CGTCTC	3 cut(s)	139, 291, 713
BsnI	GGCC	5 cut(s)	92, 594, 617, 821, 1138
Bso31I	GGTCTC	1 cut(s)	1043
BsoBI	CYCGRG	1 cut(s)	333
Bsp1286I	GDGCHC	4 cut(s)	340, 680, 902, 977
Bsp143I	GATC	3 cut(s)	357, 404, 1075
Bsp1720I	GCTNAGC	1 cut(s)	1026
BspANI	GGCC	5 cut(s)	92, 594, 617, 821, 1138
BspCNI	CTCAG	3 cut(s)	519, 709, 1018
BspFNI	CGCG	2 cut(s)	811, 1180
BspLI	GGNNCC	1 cut(s)	1103
BspMAI	CTGCAG	1 cut(s)	819
BspOI	GCTAGC	1 cut(s)	695
BspTNI	GGTCTC	1 cut(s)	1043
BsrDI	GCAATG	2 cut(s)	965, 991
BsrI	ACTGG	1 cut(s)	1047
BssECI	CCNNGG	2 cut(s)	179, 394
BssMI	GATC	3 cut(s)	357, 404, 1075
BssNI	GRCGYC	1 cut(s)	767
BssT1I	CCWWGG	2 cut(s)	179, 394
Bst4CI	ACNGT	3 cut(s)	354, 478, 532
Bst6I	CTCTTC	4 cut(s)	62, 142, 1041, 1132
BstACI	GRCGYC	1 cut(s)	767
BstDEI	CTNAG	4 cut(s)	506, 717, 826, 1026
BstF5I	GGATG	1 cut(s)	883
BstFNI	CGCG	2 cut(s)	811, 1180
BstHHI	GCGC	2 cut(s)	813, 1182
BstKTI	GATC	3 cut(s)	360, 407, 1078
BstMAI	GTCTC	4 cut(s)	139, 291, 713, 1043
BstMBI	GATC	3 cut(s)	357, 404, 1075
BstMCI	CGRYCG	1 cut(s)	360
BstMWI	GCNNNNNNNGC	7 cut(s)	160, 315, 555, 558, 814, 981, 1157
BstNSI	RCATGY	1 cut(s)	1151
BstSCI	CCNGG	1 cut(s)	372
BstSFI	CTRYAG	2 cut(s)	327, 815
BstSLI	GKGCMC	1 cut(s)	977
BstUI	CGCG	2 cut(s)	811, 1180
BsuRI	GGCC	5 cut(s)	92, 594, 617, 821, 1138
BtgZI	GCGATG	1 cut(s)	579
BtsCI	GGATG	1 cut(s)	883
BtsIMutI	CAGTG	1 cut(s)	990
CaiI	CAGNNNCTG	1 cut(s)	352
CfoI	GCGC	2 cut(s)	813, 1182
Cfr13I	GGNCC	4 cut(s)	91, 615, 624, 1137
CpoI	CGGWCCG	1 cut(s)	624
CseI	GACGC	2 cut(s)	449, 756
Csp6I	GTAC	4 cut(s)	220, 391, 611, 1040
CspI	CGGWCCG	1 cut(s)	624
CviAII	CATG	1 cut(s)	1148
CviQI	GTAC	4 cut(s)	220, 391, 611, 1040
DdeI	CTNAG	4 cut(s)	506, 717, 826, 1026
DpnI	GATC	3 cut(s)	359, 406, 1077
DpnII	GATC	3 cut(s)	357, 404, 1075
DrdI	GACNNNNNNGTC	1 cut(s)	481
DseDI	GACNNNNNNGTC	1 cut(s)	481
EaeI	YGGCCR	1 cut(s)	592
Eam1104I	CTCTTC	4 cut(s)	62, 142, 1041, 1132
EarI	CTCTTC	4 cut(s)	62, 142, 1041, 1132
EciI	GGCGGA	2 cut(s)	698, 713
Ecl136II	GAGCTC	1 cut(s)	678
Eco130I	CCWWGG	2 cut(s)	179, 394
Eco147I	AGGCCT	1 cut(s)	821
Eco24I	GRGCYC	1 cut(s)	680
Eco31I	GGTCTC	1 cut(s)	1043
Eco47I	GGWCC	1 cut(s)	624
Eco53kI	GAGCTC	1 cut(s)	678
Eco88I	CYCGRG	1 cut(s)	333
EcoICRI	GAGCTC	1 cut(s)	678
EcoRI	GAATTC	1 cut(s)	73
EcoT14I	CCWWGG	2 cut(s)	179, 394
EcoT38I	GRGCYC	1 cut(s)	680
ErhI	CCWWGG	2 cut(s)	179, 394
Esp3I	CGTCTC	3 cut(s)	139, 291, 713
FaeI	CATG	1 cut(s)	1151
FatI	CATG	1 cut(s)	1147
FauI	CCCGC	4 cut(s)	289, 392, 625, 659
FblI	GTMKAC	1 cut(s)	185
FokI	GGATG	1 cut(s)	890
FriOI	GRGCYC	1 cut(s)	680
FspBI	CTAG	4 cut(s)	110, 180, 692, 777
GlaI	GCGC	2 cut(s)	812, 1181
GsuI	CTGGAG	1 cut(s)	1052
HaeIII	GGCC	5 cut(s)	92, 594, 617, 821, 1138
HapII	CCGG	1 cut(s)	374
HgaI	GACGC	2 cut(s)	449, 756
HhaI	GCGC	2 cut(s)	813, 1182
Hin1I	GRCGYC	1 cut(s)	767
Hin1II	CATG	1 cut(s)	1151
Hin6I	GCGC	2 cut(s)	811, 1180
HinP1I	GCGC	2 cut(s)	811, 1180
HincII	GTYRAC	1 cut(s)	186
HindII	GTYRAC	1 cut(s)	186
HinfI	GANTC	6 cut(s)	200, 469, 502, 587, 749, 961
HpaII	CCGG	1 cut(s)	374
HphI	GGTGA	1 cut(s)	581
Hpy166II	GTNNAC	3 cut(s)	186, 645, 975
Hpy188I	TCNGA	3 cut(s)	474, 718, 1132
Hpy188III	TCNNGA	2 cut(s)	832, 1079
Hpy8I	GTNNAC	3 cut(s)	186, 645, 975
Hpy99I	CGWCG	3 cut(s)	16, 305, 308
HpyAV	CCTTC	3 cut(s)	151, 241, 643
HpyCH4III	ACNGT	3 cut(s)	354, 478, 532
HpyCH4IV	ACGT	1 cut(s)	420
HpyCH4V	TGCA	4 cut(s)	84, 817, 943, 975
HpyF10VI	GCNNNNNNNGC	7 cut(s)	160, 315, 555, 558, 814, 981, 1157
HpyF3I	CTNAG	4 cut(s)	506, 717, 826, 1026
HpySE526I	ACGT	1 cut(s)	420
Hsp92I	GRCGYC	1 cut(s)	767
Hsp92II	CATG	1 cut(s)	1151
HspAI	GCGC	2 cut(s)	811, 1180
Kzo9I	GATC	3 cut(s)	357, 404, 1075
LmnI	GCTCC	4 cut(s)	675, 700, 1107, 1127
LweI	GCATC	2 cut(s)	930, 1020
MaeI	CTAG	4 cut(s)	110, 180, 692, 777
MaeII	ACGT	1 cut(s)	420
MaeIII	GTNAC	1 cut(s)	569
MalI	GATC	3 cut(s)	359, 406, 1077
MboI	GATC	3 cut(s)	357, 404, 1075
MboII	GAAGA	8 cut(s)	49, 129, 273, 893, 1058, 1082, 1085, 1119
MhlI	GDGCHC	4 cut(s)	340, 680, 902, 977
MlsI	TGGCCA	1 cut(s)	594
MluCI	AATT	5 cut(s)	73, 1109, 1141, 1194, 1201
MluNI	TGGCCA	1 cut(s)	594
MlyI	GAGTC	2 cut(s)	496, 758
Mox20I	TGGCCA	1 cut(s)	594
MscI	TGGCCA	1 cut(s)	594
MseI	TTAA	1 cut(s)	173
MslI	CAYNNNNRTG	2 cut(s)	970, 995
Msp20I	TGGCCA	1 cut(s)	594
MspA1I	CMGCKG	3 cut(s)	294, 312, 663
MspI	CCGG	1 cut(s)	374
MspR9I	CCNGG	1 cut(s)	374
MvnI	CGCG	2 cut(s)	811, 1180
MwoI	GCNNNNNNNGC	7 cut(s)	160, 315, 555, 558, 814, 981, 1157
NciI	CCSGG	1 cut(s)	374
NdeII	GATC	3 cut(s)	357, 404, 1075
NheI	GCTAGC	1 cut(s)	691
NlaIII	CATG	1 cut(s)	1151
NlaIV	GGNNCC	1 cut(s)	1103
NmeAIII	GCCGAG	1 cut(s)	659
NmuCI	GTSAC	1 cut(s)	569
NspI	RCATGY	1 cut(s)	1151
OliI	CACNNNNGTG	1 cut(s)	995
PaeR7I	CTCGAG	1 cut(s)	333
PceI	AGGCCT	1 cut(s)	821
PfeI	GAWTC	4 cut(s)	200, 469, 587, 961
Ple19I	CGATCG	1 cut(s)	360
PleI	GAGTC	2 cut(s)	496, 757
PpsI	GAGTC	2 cut(s)	496, 757
PsiI	TTATAA	1 cut(s)	47
Psp124BI	GAGCTC	1 cut(s)	680
PspN4I	GGNNCC	1 cut(s)	1103
PspPI	GGNCC	4 cut(s)	91, 615, 624, 1137
PspXI	VCTCGAGB	1 cut(s)	333
PsrI	GAACNNNNNNTAC	2 cut(s)	603, 635
PstI	CTGCAG	1 cut(s)	819
PstNI	CAGNNNCTG	1 cut(s)	352
PvuI	CGATCG	1 cut(s)	360
RsaI	GTAC	4 cut(s)	221, 392, 612, 1041
RsaNI	GTAC	4 cut(s)	220, 391, 611, 1040
RseI	CAYNNNNRTG	2 cut(s)	970, 995
Rsr2I	CGGWCCG	1 cut(s)	624
RsrII	CGGWCCG	1 cut(s)	624
SacI	GAGCTC	1 cut(s)	680
SalI	GTCGAC	1 cut(s)	184
SaqAI	TTAA	1 cut(s)	173
Sau3AI	GATC	3 cut(s)	357, 404, 1075
Sau96I	GGNCC	4 cut(s)	91, 615, 624, 1137
SbfI	CCTGCAGG	1 cut(s)	819
ScaI	AGTACT	1 cut(s)	1041
SchI	GAGTC	2 cut(s)	496, 758
ScrFI	CCNGG	1 cut(s)	374
SdaI	CCTGCAGG	1 cut(s)	819
SduI	GDGCHC	4 cut(s)	340, 680, 902, 977
SfaNI	GCATC	2 cut(s)	930, 1020
SfcI	CTRYAG	2 cut(s)	327, 815
Sfr274I	CTCGAG	1 cut(s)	333
SinI	GGWCC	1 cut(s)	624
SlaI	CTCGAG	1 cut(s)	333
SmiMI	CAYNNNNRTG	2 cut(s)	970, 995
SmlI	CTYRAG	1 cut(s)	333
SmoI	CTYRAG	1 cut(s)	333
Sse8387I	CCTGCAGG	1 cut(s)	819
Sse9I	AATT	5 cut(s)	73, 1109, 1141, 1194, 1201
SseBI	AGGCCT	1 cut(s)	821
SspMI	CTAG	4 cut(s)	110, 180, 692, 777
SstI	GAGCTC	1 cut(s)	680
StuI	AGGCCT	1 cut(s)	821
StyD4I	CCNGG	1 cut(s)	372
StyI	CCWWGG	2 cut(s)	179, 394
TaaI	ACNGT	3 cut(s)	354, 478, 532
TaiI	ACGT	1 cut(s)	423
TaqI	TCGA	8 cut(s)	185, 334, 356, 403, 497, 534, 671, 804
TaqII	GACCGA	1 cut(s)	612
TasI	AATT	5 cut(s)	73, 1109, 1141, 1194, 1201
TatI	WGTACW	1 cut(s)	1039
TfiI	GAWTC	4 cut(s)	200, 469, 587, 961
Tru1I	TTAA	1 cut(s)	173
Tru9I	TTAA	1 cut(s)	173
TscAI	CASTG	1 cut(s)	997
TseFI	GTSAC	1 cut(s)	569
Tsp45I	GTSAC	1 cut(s)	569
TspDTI	ATGAA	4 cut(s)	159, 213, 894, 1194
TspGWI	ACGGA	1 cut(s)	616
TspRI	CASTG	1 cut(s)	997
VneI	GTGCAC	1 cut(s)	973
VpaK11BI	GGWCC	1 cut(s)	624
XapI	RAATTY	1 cut(s)	73
XceI	RCATGY	1 cut(s)	1151
XcmI	CCANNNNNNNNNTGG	2 cut(s)	85, 1060
XhoI	CTCGAG	1 cut(s)	333
XmaJI	CCTAGG	1 cut(s)	179
XmiI	GTMKAC	1 cut(s)	185
XspI	CTAG	4 cut(s)	110, 180, 692, 777
ZrmI	AGTACT	1 cut(s)	1041

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.