Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0010139

Physical Location & Seq

Genomic Coordinates Reverse (-)

3927657 .. 3930807

Gene Structure 3151 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom10g03610.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1209 bp

ATGGTGATGATGGAAGGCTGGTCTCCAACCACCGTATCTCCTTTGCTTCTTCGCAACCTCGTAGCCTCCGTCTTTATCTTCGCAGACAAATCCTTCCTAAACTTGACTCAGAAATCCAAACTCCTCCAACTCCTTCGCTACGTTTTCGTCACTTCCTTCATCTTCCTCCTCCGTTTGCTTCCTCCTCTAAACCCTAACAATACCCAACCCTATCACTATAAGCCTCCCACTTTCAACAAGTCTAGTAACCACAGCACTACTCATGATCATTACGATTACACTCCCGCCTCAAGCGGCGGTGCTGCTACTATTACTTGCGGCGGCGACTCTGCTATCGGCCGAGCGCTTTCGCAGCTGTTGTCCCTCATCAACGACATCCCCGTAACCTCCCGCAAGTACCAAGTGGTTCGATCTTTAGCAGAGAGCCTCATCGACGACAACCAAAAAGAGGGCGTTGAGGCTTTACGTCAAGTCAACCGTACTGTTCTCTCCGCGGCTTTTTCCACTACTCTTAGCCAGCTTGAAGCCGCCGCCGCCCTCGAACAAGGAGATGTGCGGGGAGGTGATGGCGTTGATTTGTTGGGGCCCGCTCGACCGGCAGAATACCGGTTGAGCCGGATTCTACGGGCGGTTCGATCGATTGGGGACGTGACGTGGATAAGAGGGACGAGGGCGAGCGGGACGAGGAGCTCGGCGGAGAAACTGGCGGCTGAGGTGCTTTGGTTGGCTGAGAAGCTGGCAGCTTGTGATTCGGCTGATGAAGCTGTGCGGAGATGGGCTGCGGCCTTTAATTTAGCTTGGCTCTCTCTTTCGGTTGAGCCGCACTTACAAGCATTCTTGGTCAAGGTTTCGGCATTGTTGTTCAAGCATGCCAAACACTTGGGAATGGATGAAACTGACGATGAAAGTAAGAAAGAGCAACACAAGCAAACAAAGATGCAGATGTTAATGTCGTGGCTGCCATTGCTATGCAGAGCCAGCAACGGAACCGATGTCCCAGTATTGAGCATCAGAGAAAGGGCTGAGCTGGAGAGAGTATTGGAAGAGACGATAGAGATGCTGGAAGAGGAAGAGGATCAAGAGAAAGTGCTGTCGTTGTGGCTTCACCACTTCACACATTGCTCGTCCTCTGATTGGCCCAACCTCCATGCCTCCTATGCTCGCTGGTGTAACACTTCTCGGAAGCTTTTGCTGCACCACCATGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

403

Amino Acids

45.0

Weight (kDa)

6.58

Isoelectric Point (pI)

48.27

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010139)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G64230
fragaria_vesca	FvH4_2g10990 FvH4_2g10991
malus_domestica	MD05G1044100.v1.1 MD10G1051300.v1.1
prunus_persica	Prupe.8G059500_v2.0.a1 Prupe.8G059500_v2.0.a1 Prupe.8G059500_v2.0.a1
pyrus_communis	pycom05g03680 pycom10g03610
rosa_chinensis	RchiOBHm_Chr6g0269191
rosa_laevigata	RLG00000013873
rosa_multiflora	Rmu_sc0001891.1_g000055 Rmu_ssc0000381.1_g000001
rosa_roxburghii	Rroxscaffold_7G00198960
rosa_rugosa	Rorug06G0045800
rosa_samantha	Rh6AG166100 Rh6BG171600 Rh6CG165200 Rh6DG156800
rosa_wichuraiana	Rw6G014340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	2 cut(s)	590, 678
AccII	CGCG	1 cut(s)	494
AclWI	GGATC	1 cut(s)	1083
AcoI	YGGCCR	1 cut(s)	337
AfaI	GTAC	2 cut(s)	398, 481
AfeI	AGCGCT	1 cut(s)	345
AfiI	CCNNNNNNNGG	2 cut(s)	448, 1134
AgeI	ACCGGT	1 cut(s)	606
AgsI	TTSAA	3 cut(s)	235, 524, 865
AjiI	CACGTC	2 cut(s)	649, 654
AluBI	AGCT	9 cut(s)	355, 520, 690, 736, 743, 764, 797, 1027, 1186
AluI	AGCT	9 cut(s)	355, 520, 690, 736, 743, 764, 797, 1027, 1186
Alw21I	GWGCWC	1 cut(s)	692
Alw26I	GTCTC	2 cut(s)	27, 1040
AlwI	GGATC	1 cut(s)	1083
Aor51HI	AGCGCT	1 cut(s)	345
AoxI	GGCC	4 cut(s)	337, 584, 783, 1136
ApaI	GGGCCC	1 cut(s)	588
ApeKI	GCWGC	6 cut(s)	302, 352, 740, 779, 958, 1192
AsiGI	ACCGGT	1 cut(s)	606
AspLEI	GCGC	1 cut(s)	346
AspS9I	GGNCC	3 cut(s)	584, 585, 1137
AsuHPI	GGTGA	3 cut(s)	16, 575, 1097
BaeGI	GKGCMC	1 cut(s)	588
BaeI	ACNNNNGTAYC	2 cut(s)	18, 51
BanII	GRGCYC	2 cut(s)	588, 692
Bbv12I	GWGCWC	1 cut(s)	692
BbvCI	CCTCAGC	1 cut(s)	711
BbvI	GCAGC	6 cut(s)	289, 364, 752, 766, 945, 1179
BccI	CCATC	3 cut(s)	4, 560, 768
BcgI	CGANNNNNNTGC	2 cut(s)	1039, 1073
BclI	TGATCA	1 cut(s)	265
BcoDI	GTCTC	2 cut(s)	27, 1040
BfaI	CTAG	1 cut(s)	243
BfoI	RGCGCY	1 cut(s)	347
BlpI	GCTNAGC	1 cut(s)	1023
BmgBI	CACGTC	2 cut(s)	649, 654
BmgT120I	GGNCC	3 cut(s)	584, 585, 1137
BmiI	GGNNCC	3 cut(s)	585, 586, 988
BmrI	ACTGGG	1 cut(s)	992
BmsI	GCATC	3 cut(s)	927, 1017, 1047
BmuI	ACTGGG	1 cut(s)	992
BpmI	CTGGAG	1 cut(s)	1049
Bpu10I	CCTNAGC	1 cut(s)	711
Bpu1102I	GCTNAGC	1 cut(s)	1023
BpuEI	CTTGAG	1 cut(s)	274
Bsa29I	ATCGAT	1 cut(s)	638
BsaI	GGTCTC	1 cut(s)	27
BsaJI	CCNNGG	1 cut(s)	492
BsaWI	WCCGGW	1 cut(s)	606
BsaXI	ACNNNNNCTCC	2 cut(s)	22, 52
Bsc4I	CCNNNNNNNGG	2 cut(s)	448, 1134
Bse118I	RCCGGY	2 cut(s)	595, 606
Bse1I	ACTGG	2 cut(s)	708, 998
Bse3DI	GCAATG	2 cut(s)	962, 1117
BseCI	ATCGAT	1 cut(s)	638
BseDI	CCNNGG	1 cut(s)	492
BseGI	GGATG	2 cut(s)	375, 895
BseLI	CCNNNNNNNGG	2 cut(s)	448, 1134
BseMI	GCAATG	2 cut(s)	962, 1117
BseMII	CTCAG	4 cut(s)	122, 702, 720, 1014
BseNI	ACTGG	2 cut(s)	708, 998
BseRI	GAGGAG	4 cut(s)	113, 158, 174, 700
BseSI	GKGCMC	1 cut(s)	588
BseX3I	CGGCCG	1 cut(s)	337
BseXI	GCAGC	6 cut(s)	289, 364, 752, 766, 945, 1179
BsgI	GTGCAG	1 cut(s)	1178
Bsh1236I	CGCG	1 cut(s)	494
Bsh1285I	CGRYCG	3 cut(s)	340, 596, 638
BshFI	GGCC	4 cut(s)	339, 586, 785, 1138
BshTI	ACCGGT	1 cut(s)	606
BshVI	ATCGAT	1 cut(s)	638
BsiEI	CGRYCG	3 cut(s)	340, 596, 638
BsiHKAI	GWGCWC	1 cut(s)	692
BsiSI	CCGG	3 cut(s)	596, 607, 616
BslFI	GGGAC	5 cut(s)	346, 659, 679, 694, 980
BslI	CCNNNNNNNGG	2 cut(s)	448, 1134
BsmAI	GTCTC	2 cut(s)	27, 1040
BsmBI	CGTCTC	1 cut(s)	1040
BsmFI	GGGAC	5 cut(s)	346, 659, 679, 694, 980
BsmI	GAATGC	1 cut(s)	833
BsnI	GGCC	4 cut(s)	339, 586, 785, 1138
Bso31I	GGTCTC	1 cut(s)	27
Bsp120I	GGGCCC	1 cut(s)	584
Bsp1286I	GDGCHC	2 cut(s)	588, 692
Bsp143I	GATC	4 cut(s)	265, 410, 635, 1075
Bsp1720I	GCTNAGC	1 cut(s)	1023
BspANI	GGCC	4 cut(s)	339, 586, 785, 1138
BspCNI	CTCAG	4 cut(s)	121, 703, 721, 1015
BspDI	ATCGAT	1 cut(s)	638
BspFNI	CGCG	1 cut(s)	494
BspHI	TCATGA	1 cut(s)	262
BspLI	GGNNCC	3 cut(s)	585, 586, 988
BspPI	GGATC	1 cut(s)	1083
BspTNI	GGTCTC	1 cut(s)	27
BsrBI	CCGCTC	2 cut(s)	590, 678
BsrDI	GCAATG	2 cut(s)	962, 1117
BsrFI	RCCGGY	2 cut(s)	595, 606
BsrI	ACTGG	2 cut(s)	708, 998
BssAI	RCCGGY	2 cut(s)	595, 606
BssECI	CCNNGG	1 cut(s)	492
BssMI	GATC	4 cut(s)	265, 410, 635, 1075
Bst4CI	ACNGT	3 cut(s)	34, 479, 484
Bst6I	CTCTTC	3 cut(s)	1038, 1059, 1065
BstC8I	GCNNGC	7 cut(s)	518, 588, 676, 738, 870, 979, 1162
BstDEI	CTNAG	5 cut(s)	108, 512, 711, 729, 1023
BstDSI	CCRYGG	1 cut(s)	492
BstF5I	GGATG	2 cut(s)	375, 895
BstFNI	CGCG	1 cut(s)	494
BstH2I	RGCGCY	1 cut(s)	347
BstHHI	GCGC	1 cut(s)	346
BstKTI	GATC	4 cut(s)	268, 413, 638, 1078
BstMAI	GTCTC	2 cut(s)	27, 1040
BstMBI	GATC	4 cut(s)	265, 410, 635, 1075
BstMCI	CGRYCG	3 cut(s)	340, 596, 638
BstMWI	GCNNNNNNNGC	9 cut(s)	352, 533, 596, 761, 925, 964, 978, 1157, 1192
BstNSI	RCATGY	1 cut(s)	872
BstSLI	GKGCMC	1 cut(s)	588
BstUI	CGCG	1 cut(s)	494
BstV1I	GCAGC	6 cut(s)	289, 364, 752, 766, 945, 1179
BstXI	CCANNNNNNTGG	1 cut(s)	880
BstZI	CGGCCG	1 cut(s)	337
Bsu15I	ATCGAT	1 cut(s)	638
BsuRI	GGCC	4 cut(s)	339, 586, 785, 1138
BsuTUI	ATCGAT	1 cut(s)	638
BtgI	CCRYGG	1 cut(s)	492
BtrI	CACGTC	2 cut(s)	649, 654
BtsCI	GGATG	2 cut(s)	375, 895
Cac8I	GCNNGC	7 cut(s)	518, 588, 676, 738, 870, 979, 1162
CciI	TCATGA	1 cut(s)	262
CfoI	GCGC	1 cut(s)	346
Cfr10I	RCCGGY	2 cut(s)	595, 606
Cfr13I	GGNCC	3 cut(s)	584, 585, 1137
Cfr42I	CCGCGG	1 cut(s)	495
ClaI	ATCGAT	1 cut(s)	638
Csp6I	GTAC	2 cut(s)	397, 480
CspAI	ACCGGT	1 cut(s)	606
CviAII	CATG	4 cut(s)	263, 869, 1148, 1202
CviQI	GTAC	2 cut(s)	397, 480
DdeI	CTNAG	5 cut(s)	108, 512, 711, 729, 1023
DpnI	GATC	4 cut(s)	267, 412, 637, 1077
DpnII	GATC	4 cut(s)	265, 410, 635, 1075
EaeI	YGGCCR	1 cut(s)	337
EagI	CGGCCG	1 cut(s)	337
Eam1104I	CTCTTC	3 cut(s)	1038, 1059, 1065
EarI	CTCTTC	3 cut(s)	1038, 1059, 1065
EciI	GGCGGA	1 cut(s)	710
Ecl136II	GAGCTC	1 cut(s)	690
EclXI	CGGCCG	1 cut(s)	337
Eco24I	GRGCYC	2 cut(s)	588, 692
Eco31I	GGTCTC	1 cut(s)	27
Eco47III	AGCGCT	1 cut(s)	345
Eco52I	CGGCCG	1 cut(s)	337
Eco53kI	GAGCTC	1 cut(s)	690
EcoICRI	GAGCTC	1 cut(s)	690
EcoO109I	RGGNCCY	1 cut(s)	584
EcoT38I	GRGCYC	2 cut(s)	588, 692
Esp3I	CGTCTC	1 cut(s)	1040
FaeI	CATG	4 cut(s)	266, 872, 1151, 1205
FaiI	YATR	7 cut(s)	219, 264, 870, 970, 1149, 1158, 1203
FaqI	GGGAC	5 cut(s)	346, 659, 679, 694, 980
FatI	CATG	4 cut(s)	262, 868, 1147, 1201
FauI	CCCGC	5 cut(s)	292, 398, 549, 595, 671
FbaI	TGATCA	1 cut(s)	265
FokI	GGATG	2 cut(s)	362, 902
FriOI	GRGCYC	2 cut(s)	588, 692
FspBI	CTAG	1 cut(s)	243
GlaI	GCGC	1 cut(s)	345
GsuI	CTGGAG	1 cut(s)	1049
HaeII	RGCGCY	1 cut(s)	347
HaeIII	GGCC	4 cut(s)	339, 586, 785, 1138
HapII	CCGG	3 cut(s)	596, 607, 616
HhaI	GCGC	1 cut(s)	346
Hin1II	CATG	4 cut(s)	266, 872, 1151, 1205
Hin6I	GCGC	1 cut(s)	344
HinP1I	GCGC	1 cut(s)	344
HincII	GTYRAC	1 cut(s)	475
HindII	GTYRAC	1 cut(s)	475
HindIII	AAGCTT	1 cut(s)	1184
HinfI	GANTC	4 cut(s)	106, 326, 619, 749
HpaII	CCGG	3 cut(s)	596, 607, 616
HphI	GGTGA	3 cut(s)	16, 575, 1097
Hpy166II	GTNNAC	1 cut(s)	475
Hpy188I	TCNGA	4 cut(s)	111, 1013, 1132, 1182
Hpy188III	TCNNGA	2 cut(s)	263, 1079
Hpy8I	GTNNAC	1 cut(s)	475
Hpy99I	CGWCG	1 cut(s)	437
HpyAV	CCTTC	4 cut(s)	8, 103, 143, 166
HpyCH4III	ACNGT	3 cut(s)	34, 479, 484
HpyCH4IV	ACGT	4 cut(s)	141, 466, 648, 653
HpyCH4V	TGCA	3 cut(s)	940, 972, 1195
HpyF10VI	GCNNNNNNNGC	9 cut(s)	352, 533, 596, 761, 925, 964, 978, 1157, 1192
HpyF3I	CTNAG	5 cut(s)	108, 512, 711, 729, 1023
HpySE526I	ACGT	4 cut(s)	141, 466, 648, 653
Hsp92II	CATG	4 cut(s)	266, 872, 1151, 1205
HspAI	GCGC	1 cut(s)	344
Ksp22I	TGATCA	1 cut(s)	265
KspI	CCGCGG	1 cut(s)	495
Kzo9I	GATC	4 cut(s)	265, 410, 635, 1075
LmnI	GCTCC	1 cut(s)	687
Lsp1109I	GCAGC	6 cut(s)	289, 364, 752, 766, 945, 1179
LweI	GCATC	3 cut(s)	927, 1017, 1047
MaeI	CTAG	1 cut(s)	243
MaeII	ACGT	4 cut(s)	141, 466, 648, 653
MaeIII	GTNAC	5 cut(s)	148, 245, 382, 649, 1169
MalI	GATC	4 cut(s)	267, 412, 637, 1077
MbiI	CCGCTC	2 cut(s)	590, 678
MboI	GATC	4 cut(s)	265, 410, 635, 1075
MboII	GAAGA	6 cut(s)	41, 70, 154, 1055, 1076, 1082
MhlI	GDGCHC	2 cut(s)	588, 692
MluCI	AATT	1 cut(s)	790
MlyI	GAGTC	2 cut(s)	100, 320
MmeI	TCCRAC	2 cut(s)	50, 151
MseI	TTAA	2 cut(s)	789, 947
MslI	CAYNNNNRTG	2 cut(s)	967, 1200
MspA1I	CMGCKG	2 cut(s)	355, 494
MspI	CCGG	3 cut(s)	596, 607, 616
Mva1269I	GAATGC	1 cut(s)	833
MvnI	CGCG	1 cut(s)	494
MwoI	GCNNNNNNNGC	9 cut(s)	352, 533, 596, 761, 925, 964, 978, 1157, 1192
NdeII	GATC	4 cut(s)	265, 410, 635, 1075
NlaIII	CATG	4 cut(s)	266, 872, 1151, 1205
NlaIV	GGNNCC	3 cut(s)	585, 586, 988
NmeAIII	GCCGAG	2 cut(s)	365, 671
NmuCI	GTSAC	2 cut(s)	148, 649
NspI	RCATGY	1 cut(s)	872
PaeI	GCATGC	1 cut(s)	872
PagI	TCATGA	1 cut(s)	262
PcsI	WCGNNNNNNNCGW	3 cut(s)	66, 378, 631
PctI	GAATGC	1 cut(s)	833
PfeI	GAWTC	2 cut(s)	619, 749
PinAI	ACCGGT	1 cut(s)	606
Ple19I	CGATCG	1 cut(s)	638
PleI	GAGTC	2 cut(s)	100, 320
PpsI	GAGTC	2 cut(s)	100, 320
Psp124BI	GAGCTC	1 cut(s)	692
PspN4I	GGNNCC	3 cut(s)	585, 586, 988
PspOMI	GGGCCC	1 cut(s)	584
PspPI	GGNCC	3 cut(s)	584, 585, 1137
PvuI	CGATCG	1 cut(s)	638
PvuII	CAGCTG	1 cut(s)	355
RsaI	GTAC	2 cut(s)	398, 481
RsaNI	GTAC	2 cut(s)	397, 480
RseI	CAYNNNNRTG	2 cut(s)	967, 1200
SacI	GAGCTC	1 cut(s)	692
SacII	CCGCGG	1 cut(s)	495
SaqAI	TTAA	2 cut(s)	789, 947
Sau3AI	GATC	4 cut(s)	265, 410, 635, 1075
Sau96I	GGNCC	3 cut(s)	584, 585, 1137
SchI	GAGTC	2 cut(s)	100, 320
SduI	GDGCHC	2 cut(s)	588, 692
SfaNI	GCATC	3 cut(s)	927, 1017, 1047
Sfr303I	CCGCGG	1 cut(s)	495
SgrBI	CCGCGG	1 cut(s)	495
SmiMI	CAYNNNNRTG	2 cut(s)	967, 1200
SmlI	CTYRAG	1 cut(s)	289
SmoI	CTYRAG	1 cut(s)	289
SphI	GCATGC	1 cut(s)	872
Sse9I	AATT	1 cut(s)	790
SspMI	CTAG	1 cut(s)	243
SstI	GAGCTC	1 cut(s)	692
TaaI	ACNGT	3 cut(s)	34, 479, 484
TaiI	ACGT	4 cut(s)	144, 469, 651, 656
TaqI	TCGA	6 cut(s)	409, 432, 540, 592, 634, 638
TasI	AATT	1 cut(s)	790
TfiI	GAWTC	2 cut(s)	619, 749
Tru1I	TTAA	2 cut(s)	789, 947
Tru9I	TTAA	2 cut(s)	789, 947
TseFI	GTSAC	2 cut(s)	148, 649
TseI	GCWGC	6 cut(s)	302, 352, 740, 779, 958, 1192
Tsp45I	GTSAC	2 cut(s)	148, 649
TspDTI	ATGAA	4 cut(s)	148, 774, 906, 918
TspGWI	ACGGA	3 cut(s)	58, 161, 999
XceI	RCATGY	1 cut(s)	872
XspI	CTAG	1 cut(s)	243

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.