Rh6CG165200

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0010139
Physical Location & Seq
Forward (+)
22434881 .. 22437302
2422 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG165200.1

Sequence Viewer

Length: 1218 bp
ATGATGGAGAGTTCGTCGTCCATAACTCCTTTGCTTTTCCGCAACCTTATAACCTCCCTCTTCCTTTTGGCAGAGAATTCCATTTGCAGCTTGGCCCAAAAACACAAAGCCCTAGAACTCATACGCTGCGTTTTCGTCTCTTCCTTCCTCTTTTTCCTGCGTTTGCTTCTTTCATTAAACCCTAGGTCGACCAACAATAATGAATCCCCCTATTCCATCTTGTACGACTATAATGACAAGCCTCCCAAGAAGGGTATTGGCGGAAGAAATCACAAGTATTTGCCCGCAGCCATTAGCGGAGAAGACGACGGCAGCGGCAGCGGCAGCGACACGGCTATAGCTCGAGCACTTTCGCAGCTACTGTCGATCGTCAATAATATCCCGGTAAGCTCCCGCAAATACCAAGGTGTTCGATCTTTAGCGGAGAACGTCATCTATGACAACCAGAGAGAGGGCGTGGAGGCTTTGCGTCAAGTGAATCGCACGGTTCTGTCGGCAGCGTTTTCGAGGACTCTCAGCCAGCTTGAAGCCGCCGCAACTCTCGAACAGCAGCAGGGCGGCGAGGGCGGCGGCGATGGTGATATTGATGGTTTGGATTCTGGTCATCATCATTGGATAGTACGGGCCGTTCGGTCCGTTGCGGGCGTGGTGTGGACGAAGGGGGTTAGCAGCGGCGGGTCGAGGAGCTCGGCGGAGAAGCTAGCGGCGGAGCTGCTCTGGTTGTCTGAGACGATGGCGGCTTGTGGCTTTGCTAAAGAGTCTGTGAGGAGATGGGCGTCAGCCTCTAGTTTGGCTCGCCTCTCTCTTTCAGCCGAGCCGCGCCTGCAGGCCTCCTTAGTCAAGATTACAGCATTGTTGTTGAAGTATGCTAAAGATATGGGAGTGGATGAAGATGATGATAATGAGAGCACGAAAGATCAGCAAGAAAGAAAACAAGCAAAGATGCAGATGCAGATGTTGGTGTTGTGGATTCCGTTGCTGTGCACAGCCAGCAATGGCACTGATGTGCCTGTTTTGAGCATCAGCGAAAGGGCTGAGCTGGAGAGAGTACTGGAAGAGACCATAGAGAAGCTGGCAGAAGAAGATCAAGAGCGAGTTCTATCCTTGTGGCTCCACCAATTCACATATTGCTCCTCTTCTGATTGGCCTAATTTACATGCCTCGTATGCTCGCTGGTGTAATGCTTCGCGCAAGCACTTGCTAATTCACAATTCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

405

Amino Acids

44.66

Weight (kDa)

6.18

Isoelectric Point (pI)

50.15

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 50
AccI GTMKAC 1 cut(s) 188
AccII CGCG 2 cut(s) 820, 1189
AcsI RAATTY 1 cut(s) 76
AcyI GRCGYC 1 cut(s) 776
AfaI GTAC 3 cut(s) 224, 621, 1050
AfiI CCNNNNNNNGG 2 cut(s) 251, 451
AgsI TTSAA 2 cut(s) 527, 862
AleI CACNNNNGTG 1 cut(s) 1004
Alw21I GWGCWC 4 cut(s) 349, 689, 911, 986
Alw26I GTCTC 3 cut(s) 142, 722, 1052
Alw44I GTGCAC 1 cut(s) 982
AlwNI CAGNNNCTG 1 cut(s) 361
Ama87I CYCGRG 1 cut(s) 342
AoxI GGCC 4 cut(s) 93, 624, 828, 1145
ApaLI GTGCAC 1 cut(s) 982
ApoI RAATTY 1 cut(s) 76
AspA2I CCTAGG 1 cut(s) 182
AspLEI GCGC 2 cut(s) 822, 1191
AspS9I GGNCC 3 cut(s) 94, 624, 633
AsuC2I CCSGG 1 cut(s) 383
AsuHPI GGTGA 1 cut(s) 590
AsuNHI GCTAGC 1 cut(s) 700
AvaI CYCGRG 1 cut(s) 342
AvaII GGWCC 1 cut(s) 633
AvrII CCTAGG 1 cut(s) 182
BaeGI GKGCMC 1 cut(s) 986
BanII GRGCYC 1 cut(s) 689
BbsI GAAGAC 1 cut(s) 309
Bbv12I GWGCWC 4 cut(s) 349, 689, 911, 986
BccI CCATC 5 cut(s) 224, 569, 581, 727, 765
BceAI ACGGC 3 cut(s) 325, 348, 611
BcgI CGANNNNNNTGC 2 cut(s) 486, 520
BcnI CCSGG 1 cut(s) 383
BcoDI GTCTC 3 cut(s) 142, 722, 1052
BfaI CTAG 4 cut(s) 113, 183, 701, 786
BfmI CTRYAG 2 cut(s) 336, 824
BlnI CCTAGG 1 cut(s) 182
BlpI GCTNAGC 1 cut(s) 1035
BmcAI AGTACT 1 cut(s) 1050
Bme1390I CCNGG 1 cut(s) 383
Bme18I GGWCC 1 cut(s) 633
BmeT110I CYCGRG 1 cut(s) 342
BmgT120I GGNCC 3 cut(s) 94, 624, 633
BmiI GGNNCC 1 cut(s) 1112
BmrFI CCNGG 1 cut(s) 383
BmsI GCATC 3 cut(s) 933, 939, 1029
BmtI GCTAGC 1 cut(s) 704
BpiI GAAGAC 1 cut(s) 309
BpmI CTGGAG 1 cut(s) 1061
Bpu1102I GCTNAGC 1 cut(s) 1035
BpuMI CCSGG 1 cut(s) 383
BsaHI GRCGYC 1 cut(s) 776
BsaI GGTCTC 1 cut(s) 1052
BsaJI CCNNGG 2 cut(s) 182, 403
BsaXI ACNNNNNCTCC 1 cut(s) 29
Bsc4I CCNNNNNNNGG 2 cut(s) 251, 451
Bse1I ACTGG 1 cut(s) 1056
Bse3DI GCAATG 1 cut(s) 1000
BseDI CCNNGG 2 cut(s) 182, 403
BseGI GGATG 1 cut(s) 892
BseLI CCNNNNNNNGG 2 cut(s) 251, 451
BseMI GCAATG 1 cut(s) 1000
BseMII CTCAG 3 cut(s) 529, 717, 1026
BseNI ACTGG 1 cut(s) 1056
BseRI GAGGAG 3 cut(s) 697, 781, 1123
BseSI GKGCMC 1 cut(s) 986
Bsh1236I CGCG 2 cut(s) 820, 1189
Bsh1285I CGRYCG 1 cut(s) 369
BshFI GGCC 4 cut(s) 95, 626, 830, 1147
BsiEI CGRYCG 1 cut(s) 369
BsiHKAI GWGCWC 4 cut(s) 349, 689, 911, 986
BsiHKCI CYCGRG 1 cut(s) 342
BsiSI CCGG 1 cut(s) 383
BslI CCNNNNNNNGG 2 cut(s) 251, 451
BsmAI GTCTC 3 cut(s) 142, 722, 1052
BsmBI CGTCTC 2 cut(s) 142, 722
BsnI GGCC 4 cut(s) 95, 626, 830, 1147
Bso31I GGTCTC 1 cut(s) 1052
BsoBI CYCGRG 1 cut(s) 342
Bsp1286I GDGCHC 4 cut(s) 349, 689, 911, 986
Bsp143I GATC 4 cut(s) 366, 413, 916, 1084
Bsp1720I GCTNAGC 1 cut(s) 1035
BspANI GGCC 4 cut(s) 95, 626, 830, 1147
BspCNI CTCAG 3 cut(s) 528, 718, 1027
BspFNI CGCG 2 cut(s) 820, 1189
BspLI GGNNCC 1 cut(s) 1112
BspMAI CTGCAG 1 cut(s) 828
BspOI GCTAGC 1 cut(s) 704
BspTNI GGTCTC 1 cut(s) 1052
BsrDI GCAATG 1 cut(s) 1000
BsrI ACTGG 1 cut(s) 1056
BssECI CCNNGG 2 cut(s) 182, 403
BssMI GATC 4 cut(s) 366, 413, 916, 1084
BssNI GRCGYC 1 cut(s) 776
BssT1I CCWWGG 2 cut(s) 182, 403
Bst4CI ACNGT 2 cut(s) 363, 487
Bst6I CTCTTC 4 cut(s) 65, 145, 1050, 1141
BstACI GRCGYC 1 cut(s) 776
BstDEI CTNAG 4 cut(s) 515, 726, 835, 1035
BstF5I GGATG 1 cut(s) 892
BstFNI CGCG 2 cut(s) 820, 1189
BstHHI GCGC 2 cut(s) 822, 1191
BstKTI GATC 4 cut(s) 369, 416, 919, 1087
BstMAI GTCTC 3 cut(s) 142, 722, 1052
BstMBI GATC 4 cut(s) 366, 413, 916, 1084
BstMCI CGRYCG 1 cut(s) 369
BstMWI GCNNNNNNNGC 8 cut(s) 318, 321, 324, 564, 567, 823, 990, 1166
BstNSI RCATGY 1 cut(s) 1160
BstSCI CCNGG 1 cut(s) 381
BstSFI CTRYAG 2 cut(s) 336, 824
BstSLI GKGCMC 1 cut(s) 986
BstUI CGCG 2 cut(s) 820, 1189
BstV2I GAAGAC 1 cut(s) 309
BsuRI GGCC 4 cut(s) 95, 626, 830, 1147
BtgZI GCGATG 1 cut(s) 588
BtsCI GGATG 1 cut(s) 892
BtsIMutI CAGTG 1 cut(s) 999
CaiI CAGNNNCTG 1 cut(s) 361
CfoI GCGC 2 cut(s) 822, 1191
Cfr13I GGNCC 3 cut(s) 94, 624, 633
CpoI CGGWCCG 1 cut(s) 633
CseI GACGC 2 cut(s) 458, 765
Csp6I GTAC 3 cut(s) 223, 620, 1049
CspI CGGWCCG 1 cut(s) 633
CviAII CATG 1 cut(s) 1157
CviQI GTAC 3 cut(s) 223, 620, 1049
DdeI CTNAG 4 cut(s) 515, 726, 835, 1035
DpnI GATC 4 cut(s) 368, 415, 918, 1086
DpnII GATC 4 cut(s) 366, 413, 916, 1084
Eam1104I CTCTTC 4 cut(s) 65, 145, 1050, 1141
EarI CTCTTC 4 cut(s) 65, 145, 1050, 1141
EciI GGCGGA 3 cut(s) 276, 707, 722
Ecl136II GAGCTC 1 cut(s) 687
Eco130I CCWWGG 2 cut(s) 182, 403
Eco147I AGGCCT 1 cut(s) 830
Eco24I GRGCYC 1 cut(s) 689
Eco31I GGTCTC 1 cut(s) 1052
Eco47I GGWCC 1 cut(s) 633
Eco53kI GAGCTC 1 cut(s) 687
Eco88I CYCGRG 1 cut(s) 342
EcoICRI GAGCTC 1 cut(s) 687
EcoRI GAATTC 1 cut(s) 76
EcoT14I CCWWGG 2 cut(s) 182, 403
EcoT38I GRGCYC 1 cut(s) 689
ErhI CCWWGG 2 cut(s) 182, 403
Esp3I CGTCTC 2 cut(s) 142, 722
FaeI CATG 1 cut(s) 1160
FatI CATG 1 cut(s) 1156
FauI CCCGC 4 cut(s) 292, 401, 634, 668
FblI GTMKAC 1 cut(s) 188
FokI GGATG 1 cut(s) 899
FriOI GRGCYC 1 cut(s) 689
FspBI CTAG 4 cut(s) 113, 183, 701, 786
GlaI GCGC 2 cut(s) 821, 1190
GsuI CTGGAG 1 cut(s) 1061
HaeIII GGCC 4 cut(s) 95, 626, 830, 1147
HapII CCGG 1 cut(s) 383
HgaI GACGC 2 cut(s) 458, 765
HhaI GCGC 2 cut(s) 822, 1191
Hin1I GRCGYC 1 cut(s) 776
Hin1II CATG 1 cut(s) 1160
Hin6I GCGC 2 cut(s) 820, 1189
HinP1I GCGC 2 cut(s) 820, 1189
HincII GTYRAC 1 cut(s) 189
HindII GTYRAC 1 cut(s) 189
HinfI GANTC 6 cut(s) 203, 478, 511, 596, 758, 970
HpaII CCGG 1 cut(s) 383
HphI GGTGA 1 cut(s) 590
Hpy166II GTNNAC 3 cut(s) 189, 654, 984
Hpy188I TCNGA 2 cut(s) 727, 1141
Hpy188III TCNNGA 3 cut(s) 542, 841, 1088
Hpy8I GTNNAC 3 cut(s) 189, 654, 984
Hpy99I CGWCG 2 cut(s) 19, 311
HpyAV CCTTC 3 cut(s) 154, 244, 652
HpyCH4III ACNGT 2 cut(s) 363, 487
HpyCH4IV ACGT 1 cut(s) 429
HpyCH4V TGCA 5 cut(s) 87, 826, 946, 952, 984
HpyF10VI GCNNNNNNNGC 8 cut(s) 318, 321, 324, 564, 567, 823, 990, 1166
HpyF3I CTNAG 4 cut(s) 515, 726, 835, 1035
HpySE526I ACGT 1 cut(s) 429
Hsp92I GRCGYC 1 cut(s) 776
Hsp92II CATG 1 cut(s) 1160
HspAI GCGC 2 cut(s) 820, 1189
Kzo9I GATC 4 cut(s) 366, 413, 916, 1084
LmnI GCTCC 5 cut(s) 395, 684, 709, 1116, 1136
LweI GCATC 3 cut(s) 933, 939, 1029
MaeI CTAG 4 cut(s) 113, 183, 701, 786
MaeII ACGT 1 cut(s) 429
MalI GATC 4 cut(s) 368, 415, 918, 1086
MboI GATC 4 cut(s) 366, 413, 916, 1084
MboII GAAGA 9 cut(s) 52, 132, 276, 314, 902, 1067, 1091, 1094, 1128
MhlI GDGCHC 4 cut(s) 349, 689, 911, 986
MluCI AATT 5 cut(s) 76, 1118, 1150, 1203, 1210
MlyI GAGTC 2 cut(s) 505, 767
MseI TTAA 1 cut(s) 176
MslI CAYNNNNRTG 1 cut(s) 1004
MspA1I CMGCKG 3 cut(s) 315, 321, 672
MspI CCGG 1 cut(s) 383
MspR9I CCNGG 1 cut(s) 383
MvnI CGCG 2 cut(s) 820, 1189
MwoI GCNNNNNNNGC 8 cut(s) 318, 321, 324, 564, 567, 823, 990, 1166
NciI CCSGG 1 cut(s) 383
NdeII GATC 4 cut(s) 366, 413, 916, 1084
NheI GCTAGC 1 cut(s) 700
NlaIII CATG 1 cut(s) 1160
NlaIV GGNNCC 1 cut(s) 1112
NmeAIII GCCGAG 2 cut(s) 668, 838
NspI RCATGY 1 cut(s) 1160
OliI CACNNNNGTG 1 cut(s) 1004
PaeR7I CTCGAG 1 cut(s) 342
PceI AGGCCT 1 cut(s) 830
PfeI GAWTC 4 cut(s) 203, 478, 596, 970
Ple19I CGATCG 1 cut(s) 369
PleI GAGTC 2 cut(s) 505, 766
PpsI GAGTC 2 cut(s) 505, 766
PsiI TTATAA 1 cut(s) 50
Psp124BI GAGCTC 1 cut(s) 689
PspN4I GGNNCC 1 cut(s) 1112
PspPI GGNCC 3 cut(s) 94, 624, 633
PspXI VCTCGAGB 1 cut(s) 342
PsrI GAACNNNNNNTAC 2 cut(s) 612, 644
PstI CTGCAG 1 cut(s) 828
PstNI CAGNNNCTG 1 cut(s) 361
PvuI CGATCG 1 cut(s) 369
RsaI GTAC 3 cut(s) 224, 621, 1050
RsaNI GTAC 3 cut(s) 223, 620, 1049
RseI CAYNNNNRTG 1 cut(s) 1004
Rsr2I CGGWCCG 1 cut(s) 633
RsrII CGGWCCG 1 cut(s) 633
SacI GAGCTC 1 cut(s) 689
SalI GTCGAC 1 cut(s) 187
SaqAI TTAA 1 cut(s) 176
Sau3AI GATC 4 cut(s) 366, 413, 916, 1084
Sau96I GGNCC 3 cut(s) 94, 624, 633
SbfI CCTGCAGG 1 cut(s) 828
ScaI AGTACT 1 cut(s) 1050
SchI GAGTC 2 cut(s) 505, 767
ScrFI CCNGG 1 cut(s) 383
SdaI CCTGCAGG 1 cut(s) 828
SduI GDGCHC 4 cut(s) 349, 689, 911, 986
SfaNI GCATC 3 cut(s) 933, 939, 1029
SfcI CTRYAG 2 cut(s) 336, 824
Sfr274I CTCGAG 1 cut(s) 342
SinI GGWCC 1 cut(s) 633
SlaI CTCGAG 1 cut(s) 342
SmiMI CAYNNNNRTG 1 cut(s) 1004
SmlI CTYRAG 1 cut(s) 342
SmoI CTYRAG 1 cut(s) 342
Sse8387I CCTGCAGG 1 cut(s) 828
Sse9I AATT 5 cut(s) 76, 1118, 1150, 1203, 1210
SseBI AGGCCT 1 cut(s) 830
SspMI CTAG 4 cut(s) 113, 183, 701, 786
SstI GAGCTC 1 cut(s) 689
StuI AGGCCT 1 cut(s) 830
StyD4I CCNGG 1 cut(s) 381
StyI CCWWGG 2 cut(s) 182, 403
TaaI ACNGT 2 cut(s) 363, 487
TaiI ACGT 1 cut(s) 432
TaqI TCGA 7 cut(s) 188, 343, 365, 412, 506, 543, 680
TaqII GACCGA 1 cut(s) 621
TasI AATT 5 cut(s) 76, 1118, 1150, 1203, 1210
TatI WGTACW 1 cut(s) 1048
TfiI GAWTC 4 cut(s) 203, 478, 596, 970
Tru1I TTAA 1 cut(s) 176
Tru9I TTAA 1 cut(s) 176
TscAI CASTG 1 cut(s) 1006
TspDTI ATGAA 4 cut(s) 162, 216, 903, 1203
TspGWI ACGGA 2 cut(s) 625, 963
TspRI CASTG 1 cut(s) 1006
VneI GTGCAC 1 cut(s) 982
VpaK11BI GGWCC 1 cut(s) 633
XapI RAATTY 1 cut(s) 76
XceI RCATGY 1 cut(s) 1160
XcmI CCANNNNNNNNNTGG 2 cut(s) 88, 1069
XhoI CTCGAG 1 cut(s) 342
XmaJI CCTAGG 1 cut(s) 182
XmiI GTMKAC 1 cut(s) 188
XspI CTAG 4 cut(s) 113, 183, 701, 786
ZrmI AGTACT 1 cut(s) 1050
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.