FvH4_2g10991

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0010139
Physical Location & Seq
Forward (+)
9617844 .. 9619526
1683 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g10991.t1

Sequence Viewer

Length: 969 bp
ATGAAAGACGGCGACGATGAAGGAAAGTCGACCAAGAATATCGAATCCCTCTATTCCACCTTGTACGACTACAATGACAAGCCTCCCAAGAAGGGTAGTATTGATCAAATAAATCAGAAGTATATGCCCGCAGCTAACAGCGGAGACGAAGGCGGCAACGGCAGCGACACGGCTATAGCTCGAGCACTTTCGCAGCTATTGTCGATCGTGAATGATATTCCGGTAAGCTCCCGCAAGGTTCTGTCGGAAGCGTTGTCGAGGACTCTAAACCAGCTTGAAGCCGCCGCAATTTTCGAACAGCAGCAGCACCACGGTGGCGGTGATATTGATGCTTTGGATTGTGTTCCTCATCATTGGGTAGTAAGGGCCGTTCGGACAGTTGCAGACGTGGTGTGGACAAAGGGGGTTACCAGCGGCGGGTCGAGGAGCTCGGCAGAGAAGCTAGCGGCGGAGCTGCTCTGGTTGGCTGAGACAATGGCAAGTTGTGGCTTTGCTCAAGAGTCTGTGAGGAGATGGGCGTCCGCATCTAGTTTGGCTCGCCTCTCACTTTCAGCAGAGCCGCGCCTGCAAGCCTCCTTGGTCAAGATTTCAGCATTGTTGTTGAGGTATGCCAAAAATATGGGAGGGAATGAAGGCGATGAAGATGATGATAACGAGAGCATGAAAGAGCAGCAACAAAGAAAACAAGGGAAGATGCAGATGCAGATGTTGGTGTTATGGATTCCATTGCTGTGCACAGCCAGCAACGGCACTGATGTGCCTGTTTTGAGCATCAGCGAAAGGGCCGAGCTGGAGAGACTACTGGAAGAGACCATAGAGAAGCTGGCAGAAGAAGATCAAGAGCGAGTTCTATCCTTGTGGCTCCACCACTTCACATATTGCTCGTCTTCTGATTGGCCCAATCTACATGCCTCTTATGCTCGCTGGTGTAACGCTTCGCGGAAGCAATTGATAATGCACCATTCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

323

Amino Acids

35.66

Weight (kDa)

5.44

Isoelectric Point (pI)

50.6

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 29
AccII CGCG 2 cut(s) 562, 940
AcyI GRCGYC 1 cut(s) 518
AfaI GTAC 1 cut(s) 65
AfiI CCNNNNNNNGG 2 cut(s) 92, 417
AgsI TTSAA 1 cut(s) 278
AjiI CACGTC 1 cut(s) 388
AleI CACNNNNGTG 2 cut(s) 312, 755
Alw21I GWGCWC 3 cut(s) 187, 431, 737
Alw26I GTCTC 4 cut(s) 138, 464, 790, 803
Alw44I GTGCAC 1 cut(s) 733
Ama87I CYCGRG 1 cut(s) 180
AoxI GGCC 3 cut(s) 366, 783, 896
ApaLI GTGCAC 1 cut(s) 733
ApeKI GCWGC 7 cut(s) 131, 162, 193, 301, 304, 454, 670
AspLEI GCGC 1 cut(s) 564
AspS9I GGNCC 3 cut(s) 366, 783, 897
AsuHPI GGTGA 1 cut(s) 332
AsuII TTCGAA 1 cut(s) 294
AsuNHI GCTAGC 1 cut(s) 442
AvaI CYCGRG 1 cut(s) 180
BaeGI GKGCMC 1 cut(s) 737
BanII GRGCYC 1 cut(s) 431
BbsI GAAGAC 1 cut(s) 879
Bbv12I GWGCWC 3 cut(s) 187, 431, 737
BbvI GCAGC 7 cut(s) 143, 174, 205, 313, 316, 441, 682
BccI CCATC 1 cut(s) 507
BceAI ACGGC 5 cut(s) 25, 175, 186, 353, 763
BclI TGATCA 1 cut(s) 103
BcoDI GTCTC 4 cut(s) 138, 464, 790, 803
BfaI CTAG 2 cut(s) 443, 528
BfmI CTRYAG 1 cut(s) 174
BmeT110I CYCGRG 1 cut(s) 180
BmgBI CACGTC 1 cut(s) 388
BmgT120I GGNCC 3 cut(s) 366, 783, 897
BmiI GGNNCC 1 cut(s) 863
BmsI GCATC 5 cut(s) 319, 533, 684, 690, 780
BmtI GCTAGC 1 cut(s) 446
BpiI GAAGAC 1 cut(s) 879
BpmI CTGGAG 1 cut(s) 812
Bpu14I TTCGAA 1 cut(s) 294
BpuEI CTTGAG 1 cut(s) 480
BsaHI GRCGYC 1 cut(s) 518
BsaI GGTCTC 1 cut(s) 803
BsaJI CCNNGG 2 cut(s) 310, 576
BsaWI WCCGGW 1 cut(s) 220
Bsc4I CCNNNNNNNGG 2 cut(s) 92, 417
Bse1I ACTGG 1 cut(s) 807
Bse3DI GCAATG 1 cut(s) 725
BseDI CCNNGG 2 cut(s) 310, 576
BseLI CCNNNNNNNGG 2 cut(s) 92, 417
BseMI GCAATG 1 cut(s) 725
BseMII CTCAG 1 cut(s) 459
BseNI ACTGG 1 cut(s) 807
BseRI GAGGAG 2 cut(s) 439, 523
BseSI GKGCMC 1 cut(s) 737
BseXI GCAGC 7 cut(s) 143, 174, 205, 313, 316, 441, 682
Bsh1236I CGCG 2 cut(s) 562, 940
Bsh1285I CGRYCG 1 cut(s) 207
BshFI GGCC 3 cut(s) 368, 785, 898
BsiEI CGRYCG 1 cut(s) 207
BsiHKAI GWGCWC 3 cut(s) 187, 431, 737
BsiHKCI CYCGRG 1 cut(s) 180
BsiSI CCGG 1 cut(s) 221
BslI CCNNNNNNNGG 2 cut(s) 92, 417
BsmAI GTCTC 4 cut(s) 138, 464, 790, 803
BsmBI CGTCTC 1 cut(s) 138
BsnI GGCC 3 cut(s) 368, 785, 898
Bso31I GGTCTC 1 cut(s) 803
BsoBI CYCGRG 1 cut(s) 180
Bsp119I TTCGAA 1 cut(s) 294
Bsp1286I GDGCHC 3 cut(s) 187, 431, 737
Bsp143I GATC 3 cut(s) 103, 204, 835
BspANI GGCC 3 cut(s) 368, 785, 898
BspCNI CTCAG 1 cut(s) 460
BspFNI CGCG 2 cut(s) 562, 940
BspLI GGNNCC 1 cut(s) 863
BspOI GCTAGC 1 cut(s) 446
BspT104I TTCGAA 1 cut(s) 294
BspTNI GGTCTC 1 cut(s) 803
BsrDI GCAATG 1 cut(s) 725
BsrI ACTGG 1 cut(s) 807
BssECI CCNNGG 2 cut(s) 310, 576
BssMI GATC 3 cut(s) 103, 204, 835
BssNI GRCGYC 1 cut(s) 518
BssT1I CCWWGG 1 cut(s) 576
Bst4CI ACNGT 2 cut(s) 314, 379
Bst6I CTCTTC 1 cut(s) 801
BstACI GRCGYC 1 cut(s) 518
BstBI TTCGAA 1 cut(s) 294
BstC8I GCNNGC 8 cut(s) 129, 444, 538, 566, 570, 742, 825, 922
BstDEI CTNAG 1 cut(s) 468
BstDSI CCRYGG 1 cut(s) 310
BstEII GGTNACC 1 cut(s) 406
BstFNI CGCG 2 cut(s) 562, 940
BstHHI GCGC 1 cut(s) 564
BstKTI GATC 3 cut(s) 106, 207, 838
BstMAI GTCTC 4 cut(s) 138, 464, 790, 803
BstMBI GATC 3 cut(s) 103, 204, 835
BstMCI CGRYCG 1 cut(s) 207
BstMWI GCNNNNNNNGC 5 cut(s) 159, 162, 565, 741, 917
BstNSI RCATGY 1 cut(s) 911
BstPI GGTNACC 1 cut(s) 406
BstSFI CTRYAG 1 cut(s) 174
BstSLI GKGCMC 1 cut(s) 737
BstUI CGCG 2 cut(s) 562, 940
BstV1I GCAGC 7 cut(s) 143, 174, 205, 313, 316, 441, 682
BstV2I GAAGAC 1 cut(s) 879
BstXI CCANNNNNNTGG 1 cut(s) 619
BsuRI GGCC 3 cut(s) 368, 785, 898
BtgI CCRYGG 1 cut(s) 310
BtgZI GCGATG 1 cut(s) 651
BtrI CACGTC 1 cut(s) 388
BtsIMutI CAGTG 1 cut(s) 750
Cac8I GCNNGC 8 cut(s) 129, 444, 538, 566, 570, 742, 825, 922
CfoI GCGC 1 cut(s) 564
Cfr13I GGNCC 3 cut(s) 366, 783, 897
CseI GACGC 1 cut(s) 507
Csp6I GTAC 1 cut(s) 64
CviAII CATG 2 cut(s) 661, 908
CviQI GTAC 1 cut(s) 64
DdeI CTNAG 1 cut(s) 468
DpnI GATC 3 cut(s) 105, 206, 837
DpnII GATC 3 cut(s) 103, 204, 835
Eam1104I CTCTTC 1 cut(s) 801
EarI CTCTTC 1 cut(s) 801
EciI GGCGGA 1 cut(s) 464
Ecl136II GAGCTC 1 cut(s) 429
Eco130I CCWWGG 1 cut(s) 576
Eco24I GRGCYC 1 cut(s) 431
Eco31I GGTCTC 1 cut(s) 803
Eco53kI GAGCTC 1 cut(s) 429
Eco88I CYCGRG 1 cut(s) 180
Eco91I GGTNACC 1 cut(s) 406
EcoICRI GAGCTC 1 cut(s) 429
EcoO65I GGTNACC 1 cut(s) 406
EcoT14I CCWWGG 1 cut(s) 576
EcoT38I GRGCYC 1 cut(s) 431
ErhI CCWWGG 1 cut(s) 576
Esp3I CGTCTC 1 cut(s) 138
FaeI CATG 2 cut(s) 664, 911
FatI CATG 2 cut(s) 660, 907
FauI CCCGC 3 cut(s) 136, 239, 410
FbaI TGATCA 1 cut(s) 103
FblI GTMKAC 1 cut(s) 29
FriOI GRGCYC 1 cut(s) 431
FspBI CTAG 2 cut(s) 443, 528
GlaI GCGC 1 cut(s) 563
GsuI CTGGAG 1 cut(s) 812
HaeIII GGCC 3 cut(s) 368, 785, 898
HapII CCGG 1 cut(s) 221
HgaI GACGC 1 cut(s) 507
HhaI GCGC 1 cut(s) 564
Hin1I GRCGYC 1 cut(s) 518
Hin1II CATG 2 cut(s) 664, 911
Hin6I GCGC 1 cut(s) 562
HinP1I GCGC 1 cut(s) 562
HincII GTYRAC 1 cut(s) 30
HindII GTYRAC 1 cut(s) 30
HinfI GANTC 4 cut(s) 44, 262, 500, 721
HpaII CCGG 1 cut(s) 221
HphI GGTGA 1 cut(s) 332
Hpy166II GTNNAC 3 cut(s) 30, 396, 735
Hpy188I TCNGA 4 cut(s) 117, 247, 375, 892
Hpy188III TCNNGA 4 cut(s) 208, 497, 583, 839
Hpy8I GTNNAC 3 cut(s) 30, 396, 735
Hpy99I CGWCG 1 cut(s) 17
HpyAV CCTTC 4 cut(s) 14, 85, 143, 626
HpyCH4III ACNGT 2 cut(s) 314, 379
HpyCH4IV ACGT 1 cut(s) 387
HpyCH4V TGCA 6 cut(s) 383, 568, 697, 703, 735, 958
HpyF10VI GCNNNNNNNGC 5 cut(s) 159, 162, 565, 741, 917
HpyF3I CTNAG 1 cut(s) 468
HpySE526I ACGT 1 cut(s) 387
Hsp92I GRCGYC 1 cut(s) 518
Hsp92II CATG 2 cut(s) 664, 911
HspAI GCGC 1 cut(s) 562
Ksp22I TGATCA 1 cut(s) 103
Kzo9I GATC 3 cut(s) 103, 204, 835
LmnI GCTCC 4 cut(s) 233, 426, 451, 867
Lsp1109I GCAGC 7 cut(s) 143, 174, 205, 313, 316, 441, 682
LweI GCATC 5 cut(s) 319, 533, 684, 690, 780
MaeI CTAG 2 cut(s) 443, 528
MaeII ACGT 1 cut(s) 387
MaeIII GTNAC 2 cut(s) 406, 929
MalI GATC 3 cut(s) 105, 206, 837
MboI GATC 3 cut(s) 103, 204, 835
MboII GAAGA 6 cut(s) 653, 703, 818, 842, 845, 879
MfeI CAATTG 1 cut(s) 947
MhlI GDGCHC 3 cut(s) 187, 431, 737
MluCI AATT 2 cut(s) 288, 947
MlyI GAGTC 2 cut(s) 256, 509
MmeI TCCRAC 1 cut(s) 225
MslI CAYNNNNRTG 3 cut(s) 312, 730, 755
MspA1I CMGCKG 2 cut(s) 141, 414
MspI CCGG 1 cut(s) 221
MunI CAATTG 1 cut(s) 947
MvnI CGCG 2 cut(s) 562, 940
MwoI GCNNNNNNNGC 5 cut(s) 159, 162, 565, 741, 917
NdeII GATC 3 cut(s) 103, 204, 835
NheI GCTAGC 1 cut(s) 442
NlaIII CATG 2 cut(s) 664, 911
NlaIV GGNNCC 1 cut(s) 863
NmeAIII GCCGAG 2 cut(s) 410, 811
NspI RCATGY 1 cut(s) 911
NspV TTCGAA 1 cut(s) 294
OliI CACNNNNGTG 2 cut(s) 312, 755
PaeR7I CTCGAG 1 cut(s) 180
PfeI GAWTC 2 cut(s) 44, 721
Ple19I CGATCG 1 cut(s) 207
PleI GAGTC 2 cut(s) 256, 508
PpsI GAGTC 2 cut(s) 256, 508
Psp124BI GAGCTC 1 cut(s) 431
PspEI GGTNACC 1 cut(s) 406
PspN4I GGNNCC 1 cut(s) 863
PspPI GGNCC 3 cut(s) 366, 783, 897
PspXI VCTCGAGB 1 cut(s) 180
PsrI GAACNNNNNNTAC 2 cut(s) 354, 386
PvuI CGATCG 1 cut(s) 207
RsaI GTAC 1 cut(s) 65
RsaNI GTAC 1 cut(s) 64
RseI CAYNNNNRTG 3 cut(s) 312, 730, 755
SacI GAGCTC 1 cut(s) 431
SalI GTCGAC 1 cut(s) 28
Sau3AI GATC 3 cut(s) 103, 204, 835
Sau96I GGNCC 3 cut(s) 366, 783, 897
SchI GAGTC 2 cut(s) 256, 509
SduI GDGCHC 3 cut(s) 187, 431, 737
SfaNI GCATC 5 cut(s) 319, 533, 684, 690, 780
SfcI CTRYAG 1 cut(s) 174
Sfr274I CTCGAG 1 cut(s) 180
SfuI TTCGAA 1 cut(s) 294
SlaI CTCGAG 1 cut(s) 180
SmiMI CAYNNNNRTG 3 cut(s) 312, 730, 755
SmlI CTYRAG 2 cut(s) 180, 495
SmoI CTYRAG 2 cut(s) 180, 495
Sse9I AATT 2 cut(s) 288, 947
SspMI CTAG 2 cut(s) 443, 528
SstI GAGCTC 1 cut(s) 431
StyI CCWWGG 1 cut(s) 576
TaaI ACNGT 2 cut(s) 314, 379
TaiI ACGT 1 cut(s) 390
TaqI TCGA 7 cut(s) 29, 42, 181, 203, 257, 294, 422
TasI AATT 2 cut(s) 288, 947
TauI GCSGC 6 cut(s) 156, 284, 287, 417, 449, 562
TfiI GAWTC 2 cut(s) 44, 721
TscAI CASTG 1 cut(s) 757
TseI GCWGC 7 cut(s) 131, 162, 193, 301, 304, 454, 670
TspDTI ATGAA 6 cut(s) 17, 33, 645, 654, 677, 954
TspRI CASTG 1 cut(s) 757
VneI GTGCAC 1 cut(s) 733
XceI RCATGY 1 cut(s) 911
XcmI CCANNNNNNNNNTGG 1 cut(s) 820
XhoI CTCGAG 1 cut(s) 180
XmiI GTMKAC 1 cut(s) 29
XspI CTAG 2 cut(s) 443, 528
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.