Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000381.1

Orthogroup ID

OG0010139

Physical Location & Seq

Genomic Coordinates Reverse (-)

1666 .. 3427

Gene Structure 1762 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000381.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 933 bp

atgcccgcagccatcagcggagacgacgacggcagcggcagcgacacggctatagctcgagcactttcgcagctactgtcgatcgtcaataatatcccggtaagttcccgcaagtaccaaggtgttcgatctttagcggagaacgtcatctatgacaaccagagagagggcgtggaggctttgcgtcaagtgaatcgcacggttctgtcggcagcgttttcgaggactctcagccagcttgaagccgccgcaactctcgaacagcagcagggcggcgagggcggcggcgatggtgatattgatggtttggattctggtcatcatcattggatagtacgggccgttcggtccgttgcgggcgtggtgtggacgaagggagttagcagcggcgggtcgaggagctcggcggagaagctagcggctgagctgctctggttgtctgagacgatggcggcttgtggctttgctaaagagtctgtgaggagatgggcgtcagcctctagtttggctcggctctctctttcagccgagccgcgcctgcaggcctccttagtcaagattacagcattgttgttgaagtatgccaaagatatgggagtggatgaagatgatgataatgagagcacgaaagagcagcaagaaagaaaacaagcaaagatgcaaatgcaaatgttggttttgtggattccgttgctgtgcacagccagcaatggcactgatgtgcctgttttgagcatcagcgaaagggctgagctggagagagtactggaagagaccatagagaagctggcagaagaagatcaagagcgagttctatccttgtggctccaccaattcacatattgctcctcttctgattggcctaatttacatgcctcgtatgctcgctggtgtaatgcgtcgcgcaagcacttgataattcacaattcataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

310

Amino Acids

33.92

Weight (kDa)

5.37

Isoelectric Point (pI)

53.8

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010139)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G64230
fragaria_vesca	FvH4_2g10990 FvH4_2g10991
malus_domestica	MD05G1044100.v1.1 MD10G1051300.v1.1
prunus_persica	Prupe.8G059500_v2.0.a1 Prupe.8G059500_v2.0.a1 Prupe.8G059500_v2.0.a1
pyrus_communis	pycom05g03680 pycom10g03610
rosa_chinensis	RchiOBHm_Chr6g0269191
rosa_laevigata	RLG00000013873
rosa_multiflora	Rmu_sc0001891.1_g000055 Rmu_ssc0000381.1_g000001
rosa_roxburghii	Rroxscaffold_7G00198960
rosa_rugosa	Rorug06G0045800
rosa_samantha	Rh6AG166100 Rh6BG171600 Rh6CG165200 Rh6DG156800
rosa_wichuraiana	Rw6G014340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	535, 904
AcyI	GRCGYC	1 cut(s)	491
AfaI	GTAC	3 cut(s)	116, 336, 765
AfiI	CCNNNNNNNGG	1 cut(s)	166
AgsI	TTSAA	2 cut(s)	242, 577
AleI	CACNNNNGTG	1 cut(s)	719
AluBI	AGCT	8 cut(s)	56, 73, 238, 402, 415, 427, 754, 787
AluI	AGCT	8 cut(s)	56, 73, 238, 402, 415, 427, 754, 787
Alw21I	GWGCWC	4 cut(s)	64, 404, 626, 701
Alw26I	GTCTC	3 cut(s)	15, 437, 767
Alw44I	GTGCAC	1 cut(s)	697
AlwNI	CAGNNNCTG	1 cut(s)	76
Ama87I	CYCGRG	1 cut(s)	57
AoxI	GGCC	3 cut(s)	339, 543, 860
ApaLI	GTGCAC	1 cut(s)	697
ApeKI	GCWGC	9 cut(s)	8, 33, 39, 70, 212, 265, 384, 427, 634
AspLEI	GCGC	2 cut(s)	537, 906
AspS9I	GGNCC	2 cut(s)	339, 348
AsuC2I	CCSGG	1 cut(s)	98
AsuHPI	GGTGA	1 cut(s)	305
AsuNHI	GCTAGC	1 cut(s)	415
AvaI	CYCGRG	1 cut(s)	57
AvaII	GGWCC	1 cut(s)	348
BaeGI	GKGCMC	1 cut(s)	701
BanII	GRGCYC	1 cut(s)	404
Bbv12I	GWGCWC	4 cut(s)	64, 404, 626, 701
BbvI	GCAGC	9 cut(s)	20, 45, 51, 82, 224, 277, 396, 414, 646
BccI	CCATC	5 cut(s)	20, 284, 296, 442, 480
BceAI	ACGGC	3 cut(s)	46, 63, 326
BcgI	CGANNNNNNTGC	2 cut(s)	201, 235
BcnI	CCSGG	1 cut(s)	98
BcoDI	GTCTC	3 cut(s)	15, 437, 767
BfaI	CTAG	2 cut(s)	416, 501
BfmI	CTRYAG	2 cut(s)	51, 539
BlpI	GCTNAGC	2 cut(s)	423, 750
BmcAI	AGTACT	1 cut(s)	765
Bme1390I	CCNGG	1 cut(s)	98
Bme18I	GGWCC	1 cut(s)	348
BmeT110I	CYCGRG	1 cut(s)	57
BmgT120I	GGNCC	2 cut(s)	339, 348
BmiI	GGNNCC	1 cut(s)	827
BmrFI	CCNGG	1 cut(s)	98
BmsI	GCATC	2 cut(s)	648, 744
BmtI	GCTAGC	1 cut(s)	419
BpmI	CTGGAG	1 cut(s)	776
Bpu1102I	GCTNAGC	2 cut(s)	423, 750
BpuMI	CCSGG	1 cut(s)	98
BsaHI	GRCGYC	1 cut(s)	491
BsaI	GGTCTC	1 cut(s)	767
BsaJI	CCNNGG	1 cut(s)	118
Bsc4I	CCNNNNNNNGG	1 cut(s)	166
Bse1I	ACTGG	1 cut(s)	771
Bse3DI	GCAATG	1 cut(s)	715
BseDI	CCNNGG	1 cut(s)	118
BseGI	GGATG	1 cut(s)	607
BseLI	CCNNNNNNNGG	1 cut(s)	166
BseMI	GCAATG	1 cut(s)	715
BseMII	CTCAG	4 cut(s)	244, 414, 432, 741
BseNI	ACTGG	1 cut(s)	771
BseRI	GAGGAG	3 cut(s)	412, 496, 838
BseSI	GKGCMC	1 cut(s)	701
BseXI	GCAGC	9 cut(s)	20, 45, 51, 82, 224, 277, 396, 414, 646
Bsh1236I	CGCG	2 cut(s)	535, 904
Bsh1285I	CGRYCG	1 cut(s)	84
BshFI	GGCC	3 cut(s)	341, 545, 862
BsiEI	CGRYCG	1 cut(s)	84
BsiHKAI	GWGCWC	4 cut(s)	64, 404, 626, 701
BsiHKCI	CYCGRG	1 cut(s)	57
BsiSI	CCGG	1 cut(s)	98
BslI	CCNNNNNNNGG	1 cut(s)	166
BsmAI	GTCTC	3 cut(s)	15, 437, 767
BsmBI	CGTCTC	2 cut(s)	15, 437
BsnI	GGCC	3 cut(s)	341, 545, 862
Bso31I	GGTCTC	1 cut(s)	767
BsoBI	CYCGRG	1 cut(s)	57
Bsp1286I	GDGCHC	4 cut(s)	64, 404, 626, 701
Bsp143I	GATC	3 cut(s)	81, 128, 799
Bsp1720I	GCTNAGC	2 cut(s)	423, 750
BspANI	GGCC	3 cut(s)	341, 545, 862
BspCNI	CTCAG	4 cut(s)	243, 415, 433, 742
BspFNI	CGCG	2 cut(s)	535, 904
BspLI	GGNNCC	1 cut(s)	827
BspMAI	CTGCAG	1 cut(s)	543
BspOI	GCTAGC	1 cut(s)	419
BspTNI	GGTCTC	1 cut(s)	767
BsrDI	GCAATG	1 cut(s)	715
BsrI	ACTGG	1 cut(s)	771
BssECI	CCNNGG	1 cut(s)	118
BssMI	GATC	3 cut(s)	81, 128, 799
BssNI	GRCGYC	1 cut(s)	491
BssT1I	CCWWGG	1 cut(s)	118
Bst4CI	ACNGT	2 cut(s)	78, 202
Bst6I	CTCTTC	2 cut(s)	765, 856
BstACI	GRCGYC	1 cut(s)	491
BstDEI	CTNAG	5 cut(s)	230, 423, 441, 550, 750
BstF5I	GGATG	1 cut(s)	607
BstFNI	CGCG	2 cut(s)	535, 904
BstHHI	GCGC	2 cut(s)	537, 906
BstKTI	GATC	3 cut(s)	84, 131, 802
BstMAI	GTCTC	3 cut(s)	15, 437, 767
BstMBI	GATC	3 cut(s)	81, 128, 799
BstMCI	CGRYCG	1 cut(s)	84
BstMWI	GCNNNNNNNGC	6 cut(s)	39, 279, 282, 538, 705, 881
BstNSI	RCATGY	1 cut(s)	875
BstSCI	CCNGG	1 cut(s)	96
BstSFI	CTRYAG	2 cut(s)	51, 539
BstSLI	GKGCMC	1 cut(s)	701
BstUI	CGCG	2 cut(s)	535, 904
BstV1I	GCAGC	9 cut(s)	20, 45, 51, 82, 224, 277, 396, 414, 646
BstXI	CCANNNNNNTGG	1 cut(s)	592
BsuRI	GGCC	3 cut(s)	341, 545, 862
BtgZI	GCGATG	1 cut(s)	303
BtsCI	GGATG	1 cut(s)	607
BtsIMutI	CAGTG	1 cut(s)	714
CaiI	CAGNNNCTG	1 cut(s)	76
CfoI	GCGC	2 cut(s)	537, 906
Cfr13I	GGNCC	2 cut(s)	339, 348
CpoI	CGGWCCG	1 cut(s)	348
CseI	GACGC	3 cut(s)	173, 480, 888
Csp6I	GTAC	3 cut(s)	115, 335, 764
CspI	CGGWCCG	1 cut(s)	348
CviAII	CATG	1 cut(s)	872
CviQI	GTAC	3 cut(s)	115, 335, 764
DdeI	CTNAG	5 cut(s)	230, 423, 441, 550, 750
DpnI	GATC	3 cut(s)	83, 130, 801
DpnII	GATC	3 cut(s)	81, 128, 799
Eam1104I	CTCTTC	2 cut(s)	765, 856
EarI	CTCTTC	2 cut(s)	765, 856
EciI	GGCGGA	1 cut(s)	422
Ecl136II	GAGCTC	1 cut(s)	402
Eco130I	CCWWGG	1 cut(s)	118
Eco147I	AGGCCT	1 cut(s)	545
Eco24I	GRGCYC	1 cut(s)	404
Eco31I	GGTCTC	1 cut(s)	767
Eco47I	GGWCC	1 cut(s)	348
Eco53kI	GAGCTC	1 cut(s)	402
Eco88I	CYCGRG	1 cut(s)	57
EcoICRI	GAGCTC	1 cut(s)	402
EcoT14I	CCWWGG	1 cut(s)	118
EcoT38I	GRGCYC	1 cut(s)	404
ErhI	CCWWGG	1 cut(s)	118
Esp3I	CGTCTC	2 cut(s)	15, 437
FaeI	CATG	1 cut(s)	875
FaiI	YATR	9 cut(s)	53, 153, 582, 593, 779, 841, 873, 882, 931
FatI	CATG	1 cut(s)	871
FauI	CCCGC	4 cut(s)	13, 116, 349, 383
FokI	GGATG	1 cut(s)	614
FriOI	GRGCYC	1 cut(s)	404
FspBI	CTAG	2 cut(s)	416, 501
GlaI	GCGC	2 cut(s)	536, 905
GsuI	CTGGAG	1 cut(s)	776
HaeIII	GGCC	3 cut(s)	341, 545, 862
HapII	CCGG	1 cut(s)	98
HgaI	GACGC	3 cut(s)	173, 480, 888
HhaI	GCGC	2 cut(s)	537, 906
Hin1I	GRCGYC	1 cut(s)	491
Hin1II	CATG	1 cut(s)	875
Hin6I	GCGC	2 cut(s)	535, 904
HinP1I	GCGC	2 cut(s)	535, 904
HinfI	GANTC	5 cut(s)	193, 226, 311, 473, 685
HpaII	CCGG	1 cut(s)	98
HphI	GGTGA	1 cut(s)	305
Hpy166II	GTNNAC	2 cut(s)	369, 699
Hpy188I	TCNGA	2 cut(s)	442, 856
Hpy188III	TCNNGA	3 cut(s)	257, 556, 803
Hpy8I	GTNNAC	2 cut(s)	369, 699
Hpy99I	CGWCG	3 cut(s)	29, 32, 904
HpyAV	CCTTC	1 cut(s)	367
HpyCH4III	ACNGT	2 cut(s)	78, 202
HpyCH4IV	ACGT	1 cut(s)	144
HpyCH4V	TGCA	4 cut(s)	541, 661, 667, 699
HpyF10VI	GCNNNNNNNGC	6 cut(s)	39, 279, 282, 538, 705, 881
HpyF3I	CTNAG	5 cut(s)	230, 423, 441, 550, 750
HpySE526I	ACGT	1 cut(s)	144
Hsp92I	GRCGYC	1 cut(s)	491
Hsp92II	CATG	1 cut(s)	875
HspAI	GCGC	2 cut(s)	535, 904
Kzo9I	GATC	3 cut(s)	81, 128, 799
LmnI	GCTCC	3 cut(s)	399, 831, 851
Lsp1109I	GCAGC	9 cut(s)	20, 45, 51, 82, 224, 277, 396, 414, 646
LweI	GCATC	2 cut(s)	648, 744
MaeI	CTAG	2 cut(s)	416, 501
MaeII	ACGT	1 cut(s)	144
MalI	GATC	3 cut(s)	83, 130, 801
MboI	GATC	3 cut(s)	81, 128, 799
MboII	GAAGA	5 cut(s)	617, 782, 806, 809, 843
MhlI	GDGCHC	4 cut(s)	64, 404, 626, 701
MluCI	AATT	4 cut(s)	833, 865, 918, 925
MlyI	GAGTC	2 cut(s)	220, 482
MslI	CAYNNNNRTG	1 cut(s)	719
MspA1I	CMGCKG	3 cut(s)	18, 36, 387
MspI	CCGG	1 cut(s)	98
MspR9I	CCNGG	1 cut(s)	98
MvnI	CGCG	2 cut(s)	535, 904
MwoI	GCNNNNNNNGC	6 cut(s)	39, 279, 282, 538, 705, 881
NciI	CCSGG	1 cut(s)	98
NdeII	GATC	3 cut(s)	81, 128, 799
NheI	GCTAGC	1 cut(s)	415
NlaIII	CATG	1 cut(s)	875
NlaIV	GGNNCC	1 cut(s)	827
NmeAIII	GCCGAG	3 cut(s)	383, 490, 553
NspI	RCATGY	1 cut(s)	875
OliI	CACNNNNGTG	1 cut(s)	719
PaeR7I	CTCGAG	1 cut(s)	57
PceI	AGGCCT	1 cut(s)	545
PfeI	GAWTC	3 cut(s)	193, 311, 685
Ple19I	CGATCG	1 cut(s)	84
PleI	GAGTC	2 cut(s)	220, 481
PpsI	GAGTC	2 cut(s)	220, 481
Psp124BI	GAGCTC	1 cut(s)	404
PspN4I	GGNNCC	1 cut(s)	827
PspPI	GGNCC	2 cut(s)	339, 348
PspXI	VCTCGAGB	1 cut(s)	57
PsrI	GAACNNNNNNTAC	2 cut(s)	327, 359
PstI	CTGCAG	1 cut(s)	543
PstNI	CAGNNNCTG	1 cut(s)	76
PvuI	CGATCG	1 cut(s)	84
RsaI	GTAC	3 cut(s)	116, 336, 765
RsaNI	GTAC	3 cut(s)	115, 335, 764
RseI	CAYNNNNRTG	1 cut(s)	719
Rsr2I	CGGWCCG	1 cut(s)	348
RsrII	CGGWCCG	1 cut(s)	348
SacI	GAGCTC	1 cut(s)	404
Sau3AI	GATC	3 cut(s)	81, 128, 799
Sau96I	GGNCC	2 cut(s)	339, 348
SbfI	CCTGCAGG	1 cut(s)	543
ScaI	AGTACT	1 cut(s)	765
SchI	GAGTC	2 cut(s)	220, 482
ScrFI	CCNGG	1 cut(s)	98
SdaI	CCTGCAGG	1 cut(s)	543
SduI	GDGCHC	4 cut(s)	64, 404, 626, 701
SfaNI	GCATC	2 cut(s)	648, 744
SfcI	CTRYAG	2 cut(s)	51, 539
Sfr274I	CTCGAG	1 cut(s)	57
SinI	GGWCC	1 cut(s)	348
SlaI	CTCGAG	1 cut(s)	57
SmiMI	CAYNNNNRTG	1 cut(s)	719
SmlI	CTYRAG	1 cut(s)	57
SmoI	CTYRAG	1 cut(s)	57
Sse8387I	CCTGCAGG	1 cut(s)	543
Sse9I	AATT	4 cut(s)	833, 865, 918, 925
SseBI	AGGCCT	1 cut(s)	545
SspMI	CTAG	2 cut(s)	416, 501
SstI	GAGCTC	1 cut(s)	404
StuI	AGGCCT	1 cut(s)	545
StyD4I	CCNGG	1 cut(s)	96
StyI	CCWWGG	1 cut(s)	118
TaaI	ACNGT	2 cut(s)	78, 202
TaiI	ACGT	1 cut(s)	147
TaqI	TCGA	6 cut(s)	58, 80, 127, 221, 258, 395
TaqII	GACCGA	1 cut(s)	336
TasI	AATT	4 cut(s)	833, 865, 918, 925
TatI	WGTACW	1 cut(s)	763
TfiI	GAWTC	3 cut(s)	193, 311, 685
TscAI	CASTG	1 cut(s)	721
TseI	GCWGC	9 cut(s)	8, 33, 39, 70, 212, 265, 384, 427, 634
TspDTI	ATGAA	2 cut(s)	618, 918
TspGWI	ACGGA	2 cut(s)	340, 678
TspRI	CASTG	1 cut(s)	721
VneI	GTGCAC	1 cut(s)	697
VpaK11BI	GGWCC	1 cut(s)	348
XceI	RCATGY	1 cut(s)	875
XcmI	CCANNNNNNNNNTGG	1 cut(s)	784
XhoI	CTCGAG	1 cut(s)	57
XspI	CTAG	2 cut(s)	416, 501
ZrmI	AGTACT	1 cut(s)	765

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.