Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp08

Orthogroup ID

OG0010139

Physical Location & Seq

Genomic Coordinates Reverse (-)

8388290 .. 8391954

Gene Structure 3665 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.8G059500.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1197 bp

ATGACGATGATGGAAGGCTCCTCCATACCTCCTTTGCTTATCCGCAACCTCATATCCTCCATTTTTATCTTCGCAGACAAATCCCTCTTGAACTTGTCCCAGAAATCCAAGCTCCTCCAGCTCATACGCTGCGTTTTGGTCAATTCATTCCTGTTCTTCCTGCGCTTTCTCCCTCCTTTAGACCCTAGCGACGACGACGTTCCCTATCGAAAGGGTCACAATAAGAAGTCTTCGAACATACATGAATATGAGTTTCAAAGACCGTCAAGCGTTGCCGTCGCTAATACTGGTAGCGGCGGCAGCACTGGCTCGGCTATCGGCCGAGCGCTTTCGCAGCTCTTGTCGCTCATGAACGACATCCCCGTGAGCTCCCGCAAGTACCAAGTTGTTCGGTCTTTAGCGGAGACCCTCATCGAGGATAACCATAAAGAGGGCGTAGAGGCTTTGCGTCAAGTCAACCGTACGGTTCTCTCCGCGGCTTTTTCCCGAACACTTGGGCAGCTGGAAGCCGCCGCCGCTCTCGAACAACAAGTACCCCGCGGCGTCGGTGATGGCGGCGATTTGGTGGGGCCCGCTCGGCCGGCGGAGTACCGGTTGAGCCGGGTTCTGCGGGCGGTTCGGTCGATTGGCGACGTGGCGTGGCTGGGGGCAGCGAGGGCTAGTGGGTCGAGGAGCTCGGCGGAGAAGCTGGCGGCTGAGGTGCTTTGGCTGGCGGAGAAGTTGGCGGCCTGTGGATATGGGGATGAAGCTGTTGTGAGATGGGCTTCAGCTTCTAATTTGGCTTGGCTCTCTGTTTCGGTTGAGCCAAGCTTACAAGCTTCCTTGGTCAAGGTTTCGGCATTATTGTTCAAGCATGCCAAAGATATGGGAACGGATGCAGCTGATGATGATGAAAGCAAAGAGCAACAAAAGCAAAGAAAGATGCAGATGCTAATGTCGTGGCTGCCATTGCTATGCAGAGGCAGCAACGGTACCGACGTCCCGGTTTTGAGCATTCGGGAGAGGGCTGAGCTGGAGAGAGTGTTGGAAGATACCATAGAGATGCTGGAGAAGGAAGAAGATCAAGAGAAAGTGTTATCCTTGTGGCTCCACCACTTCACATATTGCTCCTCCTCTGATTGGCCCAATCTCCATGCCTCCTATGCCCGCTGGTGCAATGCTTCCCGGAAGCTCTTGCTTCCCCACCATGATATATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

399

Amino Acids

43.95

Weight (kDa)

6.77

Isoelectric Point (pI)

45.17

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010139)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G64230
fragaria_vesca	FvH4_2g10990 FvH4_2g10991
malus_domestica	MD05G1044100.v1.1 MD10G1051300.v1.1
prunus_persica	Prupe.8G059500_v2.0.a1 Prupe.8G059500_v2.0.a1 Prupe.8G059500_v2.0.a1
pyrus_communis	pycom05g03680 pycom10g03610
rosa_chinensis	RchiOBHm_Chr6g0269191
rosa_laevigata	RLG00000013873
rosa_multiflora	Rmu_sc0001891.1_g000055 Rmu_ssc0000381.1_g000001
rosa_roxburghii	Rroxscaffold_7G00198960
rosa_rugosa	Rorug06G0045800
rosa_samantha	Rh6AG166100 Rh6BG171600 Rh6CG165200 Rh6DG156800
rosa_wichuraiana	Rw6G014340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	981
Acc65I	GGTACC	1 cut(s)	971
AccB1I	GGYRCC	1 cut(s)	971
AccBSI	CCGCTC	2 cut(s)	518, 575
AccII	CGCG	2 cut(s)	476, 540
AcoI	YGGCCR	2 cut(s)	319, 578
AcuI	CTGAAG	1 cut(s)	750
AcyI	GRCGYC	2 cut(s)	543, 978
AfaI	GTAC	5 cut(s)	380, 463, 534, 590, 973
AfeI	AGCGCT	1 cut(s)	327
AfiI	CCNNNNNNNGG	3 cut(s)	415, 430, 1119
AgeI	ACCGGT	1 cut(s)	591
AgsI	TTSAA	3 cut(s)	91, 257, 850
AjiI	CACGTC	1 cut(s)	634
Alw21I	GWGCWC	2 cut(s)	371, 677
Alw26I	GTCTC	1 cut(s)	398
Aor51HI	AGCGCT	1 cut(s)	327
AoxI	GGCC	5 cut(s)	319, 569, 578, 726, 1121
ApaI	GGGCCC	1 cut(s)	573
ApeKI	GCWGC	8 cut(s)	129, 300, 334, 499, 650, 878, 943, 963
AsiGI	ACCGGT	1 cut(s)	591
Asp718I	GGTACC	1 cut(s)	971
AspLEI	GCGC	2 cut(s)	165, 328
AspS9I	GGNCC	3 cut(s)	569, 570, 1122
AsuC2I	CCSGG	3 cut(s)	602, 983, 1165
AsuHPI	GGTGA	1 cut(s)	560
AsuII	TTCGAA	1 cut(s)	233
BaeGI	GKGCMC	1 cut(s)	573
BaeI	ACNNNNGTAYC	2 cut(s)	963, 996
BanI	GGYRCC	1 cut(s)	971
BanII	GRGCYC	3 cut(s)	371, 573, 677
BbsI	GAAGAC	1 cut(s)	222
Bbv12I	GWGCWC	2 cut(s)	371, 677
BbvCI	CCTCAGC	1 cut(s)	696
BbvI	GCAGC	8 cut(s)	116, 312, 346, 511, 662, 890, 930, 975
BccI	CCATC	3 cut(s)	4, 545, 753
BceAI	ACGGC	1 cut(s)	260
BcnI	CCSGG	3 cut(s)	602, 983, 1165
BcoDI	GTCTC	1 cut(s)	398
BfaI	CTAG	2 cut(s)	186, 660
BfoI	RGCGCY	1 cut(s)	329
BglI	GCCNNNNNGGC	1 cut(s)	577
BlpI	GCTNAGC	1 cut(s)	1008
Bme1390I	CCNGG	3 cut(s)	602, 983, 1165
BmgBI	CACGTC	1 cut(s)	634
BmgT120I	GGNCC	3 cut(s)	569, 570, 1122
BmiI	GGNNCC	5 cut(s)	19, 570, 571, 973, 1088
BmrFI	CCNGG	3 cut(s)	602, 983, 1165
BmsI	GCATC	4 cut(s)	865, 912, 918, 1032
BpiI	GAAGAC	1 cut(s)	222
BpmI	CTGGAG	3 cut(s)	101, 1034, 1067
Bpu10I	CCTNAGC	1 cut(s)	696
Bpu1102I	GCTNAGC	1 cut(s)	1008
Bpu14I	TTCGAA	1 cut(s)	233
BpuMI	CCSGG	3 cut(s)	602, 983, 1165
BsaHI	GRCGYC	2 cut(s)	543, 978
BsaI	GGTCTC	1 cut(s)	398
BsaJI	CCNNGG	3 cut(s)	474, 538, 822
BsaWI	WCCGGW	1 cut(s)	591
BsaXI	ACNNNNNCTCC	4 cut(s)	578, 608, 1007, 1037
Bsc4I	CCNNNNNNNGG	3 cut(s)	415, 430, 1119
Bse118I	RCCGGY	2 cut(s)	580, 591
Bse1I	ACTGG	2 cut(s)	292, 310
Bse3DI	GCAATG	2 cut(s)	947, 1162
BseDI	CCNNGG	3 cut(s)	474, 538, 822
BseGI	GGATG	3 cut(s)	357, 748, 880
BseLI	CCNNNNNNNGG	3 cut(s)	415, 430, 1119
BseMI	GCAATG	2 cut(s)	947, 1162
BseMII	CTCAG	2 cut(s)	687, 999
BseNI	ACTGG	2 cut(s)	292, 310
BseRI	GAGGAG	5 cut(s)	10, 104, 685, 1099, 1102
BseSI	GKGCMC	1 cut(s)	573
BseX3I	CGGCCG	2 cut(s)	319, 578
BseXI	GCAGC	8 cut(s)	116, 312, 346, 511, 662, 890, 930, 975
BseYI	CCCAGC	1 cut(s)	643
Bsh1236I	CGCG	2 cut(s)	476, 540
Bsh1285I	CGRYCG	3 cut(s)	322, 581, 623
BshFI	GGCC	5 cut(s)	321, 571, 580, 728, 1123
BshNI	GGYRCC	1 cut(s)	971
BshTI	ACCGGT	1 cut(s)	591
BsiEI	CGRYCG	3 cut(s)	322, 581, 623
BsiHKAI	GWGCWC	2 cut(s)	371, 677
BsiSI	CCGG	5 cut(s)	581, 592, 601, 983, 1165
BsiWI	CGTACG	1 cut(s)	461
BslFI	GGGAC	2 cut(s)	82, 965
BslI	CCNNNNNNNGG	3 cut(s)	415, 430, 1119
BsmAI	GTCTC	1 cut(s)	398
BsmFI	GGGAC	2 cut(s)	82, 965
BsmI	GAATGC	1 cut(s)	993
BsnI	GGCC	5 cut(s)	321, 571, 580, 728, 1123
Bso31I	GGTCTC	1 cut(s)	398
Bsp119I	TTCGAA	1 cut(s)	233
Bsp120I	GGGCCC	1 cut(s)	569
Bsp1286I	GDGCHC	3 cut(s)	371, 573, 677
Bsp143I	GATC	1 cut(s)	1060
Bsp1720I	GCTNAGC	1 cut(s)	1008
BspANI	GGCC	5 cut(s)	321, 571, 580, 728, 1123
BspCNI	CTCAG	2 cut(s)	688, 1000
BspFNI	CGCG	2 cut(s)	476, 540
BspHI	TCATGA	1 cut(s)	348
BspLI	GGNNCC	5 cut(s)	19, 570, 571, 973, 1088
BspT104I	TTCGAA	1 cut(s)	233
BspT107I	GGYRCC	1 cut(s)	971
BspTNI	GGTCTC	1 cut(s)	398
BsrBI	CCGCTC	2 cut(s)	518, 575
BsrDI	GCAATG	2 cut(s)	947, 1162
BsrFI	RCCGGY	2 cut(s)	580, 591
BsrI	ACTGG	2 cut(s)	292, 310
BssAI	RCCGGY	2 cut(s)	580, 591
BssECI	CCNNGG	3 cut(s)	474, 538, 822
BssMI	GATC	1 cut(s)	1060
BssNI	GRCGYC	2 cut(s)	543, 978
BssT1I	CCWWGG	1 cut(s)	822
Bst4CI	ACNGT	4 cut(s)	264, 461, 466, 971
BstACI	GRCGYC	2 cut(s)	543, 978
BstBI	TTCGAA	1 cut(s)	233
BstC8I	GCNNGC	7 cut(s)	573, 582, 612, 690, 711, 855, 1147
BstDEI	CTNAG	2 cut(s)	696, 1008
BstDSI	CCRYGG	2 cut(s)	474, 538
BstENI	CCTNNNNNAGG	1 cut(s)	413
BstF5I	GGATG	3 cut(s)	357, 748, 880
BstFNI	CGCG	2 cut(s)	476, 540
BstH2I	RGCGCY	1 cut(s)	329
BstHHI	GCGC	2 cut(s)	165, 328
BstKTI	GATC	1 cut(s)	1063
BstMAI	GTCTC	1 cut(s)	398
BstMBI	GATC	1 cut(s)	1060
BstMCI	CGRYCG	3 cut(s)	322, 581, 623
BstNSI	RCATGY	1 cut(s)	857
BstSCI	CCNGG	3 cut(s)	600, 981, 1163
BstSLI	GKGCMC	1 cut(s)	573
BstUI	CGCG	2 cut(s)	476, 540
BstV1I	GCAGC	8 cut(s)	116, 312, 346, 511, 662, 890, 930, 975
BstV2I	GAAGAC	1 cut(s)	222
BstXI	CCANNNNNNTGG	1 cut(s)	865
BstZI	CGGCCG	2 cut(s)	319, 578
BsuRI	GGCC	5 cut(s)	321, 571, 580, 728, 1123
BtgI	CCRYGG	2 cut(s)	474, 538
BtrI	CACGTC	1 cut(s)	634
BtsCI	GGATG	3 cut(s)	357, 748, 880
BtsIMutI	CAGTG	1 cut(s)	303
Cac8I	GCNNGC	7 cut(s)	573, 582, 612, 690, 711, 855, 1147
CciI	TCATGA	1 cut(s)	348
CfoI	GCGC	2 cut(s)	165, 328
Cfr10I	RCCGGY	2 cut(s)	580, 591
Cfr13I	GGNCC	3 cut(s)	569, 570, 1122
Cfr42I	CCGCGG	2 cut(s)	477, 541
CseI	GACGC	2 cut(s)	437, 532
Csp6I	GTAC	5 cut(s)	379, 462, 533, 589, 972
CspAI	ACCGGT	1 cut(s)	591
CviAII	CATG	5 cut(s)	242, 349, 854, 1133, 1187
CviQI	GTAC	5 cut(s)	379, 462, 533, 589, 972
DdeI	CTNAG	2 cut(s)	696, 1008
DpnI	GATC	1 cut(s)	1062
DpnII	GATC	1 cut(s)	1060
EaeI	YGGCCR	2 cut(s)	319, 578
EagI	CGGCCG	2 cut(s)	319, 578
EciI	GGCGGA	3 cut(s)	599, 695, 728
Ecl136II	GAGCTC	2 cut(s)	369, 675
EclXI	CGGCCG	2 cut(s)	319, 578
Eco130I	CCWWGG	1 cut(s)	822
Eco24I	GRGCYC	3 cut(s)	371, 573, 677
Eco31I	GGTCTC	1 cut(s)	398
Eco47III	AGCGCT	1 cut(s)	327
Eco52I	CGGCCG	2 cut(s)	319, 578
Eco53kI	GAGCTC	2 cut(s)	369, 675
Eco57I	CTGAAG	1 cut(s)	750
EcoICRI	GAGCTC	2 cut(s)	369, 675
EcoNI	CCTNNNNNAGG	1 cut(s)	413
EcoO109I	RGGNCCY	1 cut(s)	569
EcoT14I	CCWWGG	1 cut(s)	822
EcoT38I	GRGCYC	3 cut(s)	371, 573, 677
ErhI	CCWWGG	1 cut(s)	822
FaeI	CATG	5 cut(s)	245, 352, 857, 1136, 1190
FaqI	GGGAC	2 cut(s)	82, 965
FatI	CATG	5 cut(s)	241, 348, 853, 1132, 1186
FauI	CCCGC	5 cut(s)	380, 545, 580, 603, 1154
FokI	GGATG	3 cut(s)	344, 755, 887
FriOI	GRGCYC	3 cut(s)	371, 573, 677
FspBI	CTAG	2 cut(s)	186, 660
GlaI	GCGC	2 cut(s)	164, 327
GsaI	CCCAGC	1 cut(s)	647
GsuI	CTGGAG	3 cut(s)	101, 1034, 1067
HaeII	RGCGCY	1 cut(s)	329
HaeIII	GGCC	5 cut(s)	321, 571, 580, 728, 1123
HapII	CCGG	5 cut(s)	581, 592, 601, 983, 1165
HgaI	GACGC	2 cut(s)	437, 532
HhaI	GCGC	2 cut(s)	165, 328
Hin1I	GRCGYC	2 cut(s)	543, 978
Hin1II	CATG	5 cut(s)	245, 352, 857, 1136, 1190
Hin6I	GCGC	2 cut(s)	163, 326
HinP1I	GCGC	2 cut(s)	163, 326
HincII	GTYRAC	1 cut(s)	457
HindII	GTYRAC	1 cut(s)	457
HindIII	AAGCTT	2 cut(s)	808, 816
HpaII	CCGG	5 cut(s)	581, 592, 601, 983, 1165
HphI	GGTGA	1 cut(s)	560
Hpy166II	GTNNAC	1 cut(s)	457
Hpy188I	TCNGA	1 cut(s)	1117
Hpy188III	TCNNGA	6 cut(s)	88, 349, 486, 521, 998, 1064
Hpy8I	GTNNAC	1 cut(s)	457
Hpy99I	CGWCG	7 cut(s)	194, 197, 200, 281, 548, 635, 980
HpyAV	CCTTC	2 cut(s)	8, 1045
HpyCH4III	ACNGT	4 cut(s)	264, 461, 466, 971
HpyCH4IV	ACGT	3 cut(s)	198, 633, 978
HpyCH4V	TGCA	4 cut(s)	878, 925, 957, 1155
HpyF3I	CTNAG	2 cut(s)	696, 1008
HpySE526I	ACGT	3 cut(s)	198, 633, 978
Hsp92I	GRCGYC	2 cut(s)	543, 978
Hsp92II	CATG	5 cut(s)	245, 352, 857, 1136, 1190
HspAI	GCGC	2 cut(s)	163, 326
KpnI	GGTACC	1 cut(s)	975
KroI	GCCGGC	1 cut(s)	580
KroNI	GCCGGC	1 cut(s)	582
KspI	CCGCGG	2 cut(s)	477, 541
Kzo9I	GATC	1 cut(s)	1060
LmnI	GCTCC	6 cut(s)	23, 117, 374, 672, 1092, 1112
Lsp1109I	GCAGC	8 cut(s)	116, 312, 346, 511, 662, 890, 930, 975
LweI	GCATC	4 cut(s)	865, 912, 918, 1032
MaeI	CTAG	2 cut(s)	186, 660
MaeII	ACGT	3 cut(s)	198, 633, 978
MaeIII	GTNAC	1 cut(s)	215
MalI	GATC	1 cut(s)	1062
MbiI	CCGCTC	2 cut(s)	518, 575
MboI	GATC	1 cut(s)	1060
MboII	GAAGA	6 cut(s)	61, 148, 222, 1040, 1067, 1070
MhlI	GDGCHC	3 cut(s)	371, 573, 677
MluCI	AATT	2 cut(s)	142, 775
MmeI	TCCRAC	1 cut(s)	1005
MroNI	GCCGGC	1 cut(s)	580
MslI	CAYNNNNRTG	4 cut(s)	246, 362, 952, 1040
MspA1I	CMGCKG	5 cut(s)	476, 502, 540, 881, 1149
MspI	CCGG	5 cut(s)	581, 592, 601, 983, 1165
MspR9I	CCNGG	3 cut(s)	602, 983, 1165
Mva1269I	GAATGC	1 cut(s)	993
MvnI	CGCG	2 cut(s)	476, 540
NaeI	GCCGGC	1 cut(s)	582
NciI	CCSGG	3 cut(s)	602, 983, 1165
NdeII	GATC	1 cut(s)	1060
NgoMIV	GCCGGC	1 cut(s)	580
NlaIII	CATG	5 cut(s)	245, 352, 857, 1136, 1190
NlaIV	GGNNCC	5 cut(s)	19, 570, 571, 973, 1088
NmeAIII	GCCGAG	4 cut(s)	290, 347, 556, 656
NmuCI	GTSAC	1 cut(s)	215
NspI	RCATGY	1 cut(s)	857
NspV	TTCGAA	1 cut(s)	233
PaeI	GCATGC	1 cut(s)	857
PagI	TCATGA	1 cut(s)	348
PcsI	WCGNNNNNNNCGW	2 cut(s)	360, 975
PctI	GAATGC	1 cut(s)	993
PdiI	GCCGGC	1 cut(s)	582
Pfl23II	CGTACG	1 cut(s)	461
PfoI	TCCNGGA	1 cut(s)	1163
PinAI	ACCGGT	1 cut(s)	591
Psp124BI	GAGCTC	2 cut(s)	371, 677
PspFI	CCCAGC	1 cut(s)	643
PspLI	CGTACG	1 cut(s)	461
PspN4I	GGNNCC	5 cut(s)	19, 570, 571, 973, 1088
PspOMI	GGGCCC	1 cut(s)	569
PspPI	GGNCC	3 cut(s)	569, 570, 1122
PsrI	GAACNNNNNNTAC	2 cut(s)	516, 548
PvuII	CAGCTG	2 cut(s)	502, 881
RsaI	GTAC	5 cut(s)	380, 463, 534, 590, 973
RsaNI	GTAC	5 cut(s)	379, 462, 533, 589, 972
RseI	CAYNNNNRTG	4 cut(s)	246, 362, 952, 1040
SacI	GAGCTC	2 cut(s)	371, 677
SacII	CCGCGG	2 cut(s)	477, 541
Sau3AI	GATC	1 cut(s)	1060
Sau96I	GGNCC	3 cut(s)	569, 570, 1122
ScrFI	CCNGG	3 cut(s)	602, 983, 1165
SduI	GDGCHC	3 cut(s)	371, 573, 677
SfaNI	GCATC	4 cut(s)	865, 912, 918, 1032
SfiI	GGCCNNNNNGGCC	1 cut(s)	577
Sfr303I	CCGCGG	2 cut(s)	477, 541
SfuI	TTCGAA	1 cut(s)	233
SgrBI	CCGCGG	2 cut(s)	477, 541
SmiMI	CAYNNNNRTG	4 cut(s)	246, 362, 952, 1040
SphI	GCATGC	1 cut(s)	857
Sse9I	AATT	2 cut(s)	142, 775
SspMI	CTAG	2 cut(s)	186, 660
SstI	GAGCTC	2 cut(s)	371, 677
StyD4I	CCNGG	3 cut(s)	600, 981, 1163
StyI	CCWWGG	1 cut(s)	822
TaaI	ACNGT	4 cut(s)	264, 461, 466, 971
TaiI	ACGT	3 cut(s)	201, 636, 981
TaqI	TCGA	6 cut(s)	208, 233, 414, 522, 623, 668
TaqII	GACCGA	2 cut(s)	381, 609
TasI	AATT	2 cut(s)	142, 775
TscAI	CASTG	1 cut(s)	310
TseFI	GTSAC	1 cut(s)	215
TseI	GCWGC	8 cut(s)	129, 300, 334, 499, 650, 878, 943, 963
Tsp45I	GTSAC	1 cut(s)	215
TspDTI	ATGAA	5 cut(s)	135, 258, 365, 759, 906
TspGWI	ACGGA	1 cut(s)	887
TspRI	CASTG	1 cut(s)	310
XagI	CCTNNNNNAGG	1 cut(s)	413
XceI	RCATGY	1 cut(s)	857
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1042
XspI	CTAG	2 cut(s)	186, 660
ZraI	GACGTC	1 cut(s)	979

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.