Rroxscaffold_7G00198960

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0010139
Physical Location & Seq
Reverse (-)
44752692 .. 44755009
2318 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00198960.1

Sequence Viewer

Length: 1221 bp
ATGATGGAGAGTTCGTCGTCCATAACTCCTCTGCTTTTCCGCAACCTTATAACCTCCCTCTTCCTTTTGGCAGAGAATTCCATTTGCAGCTTGGCCCAAAAAAACAAAGCGCTAGAACTCATACGCTGCGTTTTCGTCTCTTCCTTCCTCTTTTTCCTGCGTTTGCTTCTTTCTTTAAACCCTAGGTCGACCAACAATAATGAATCCCCCTATTCCATCTTGTACGACTATAAAGACAAGCCTCCCAAGAAGGGTATTGGCGGAAGAAATCACAACTATATGCCCGCAGCTATCAGCGGAGAAGACGACGGCAGCGGCAGCGACACGGCTATAGCTCGAGCACTTTCGCAGCTACTGTCGATCGTCAATAATATCCCGGTAAGCTCCCGCAAGTACCAAGGTGTTCGATCTTTAGCGGAGAACGTCATCTATGACAACCAGAGAGAGGGAGTGGAGGCTTTGCGTCAAGTGAATCGCACGGTTCTGTCGGCAGCGTTTTCGAGGACTCTCTGCCAGCTTGAAGCCGCCGCAACTCTCGAACAGCAGCAGGGAGGCGGGGGCGGCATCGGCGGCGGCGATGGTGATATTGATGGTTTGGATTCTGGTCATCATCATTGGATTGTACGGGCCGTTCGGTCCGTTGCGGGCGTGGTGTGGACGAAGGGGGTTAGCAGCGGCGGGTCGAGGAGCTCGGCGGAGAAGCTAGCGGCGGAGCTGCTCTGGTTGGCTGAGACGATGGCGGCTTGTGGCTTTGCTAAAGAGTCTGTGAGGAGATGGGCGTCAGCCTCTAGTTTGGCTCGCCTCTCTCTTTCAGCCGAGCCGCGCCTGCAGGCCTCCTTGGTCAAGATTTCAGCATTGTTGTTGAAGTATGCCAAAGATATGGGAGTGGATGAAGATGATGATAATGAGAGCACGAAAGAGCAGCAAGAAAGAAAACAAGCAAAGATGCGAATGCAGATGTTGGTGTTGTGGATTCCGTTGCTGTGCACAGCCAGCAATGGCACTGATGTGCCTGTTTTGAGCATCAGCGAAAGGGCTGAGCTGGAGAGAGTACTGGAAGAGACCATAGAGAAGCTGGCAGAAGAAGATCAAGAGCGAGTTCTATCCTTGTGGCTCCACCAATTCACATATTGCTCCTCTTCTGATTGGCCTAATTTACATGCCTCGTATGCTCGCTGGTGTAATGCTTCGCGCAAGCACTTGATAATTCACAATTCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

406

Amino Acids

44.69

Weight (kDa)

6.48

Isoelectric Point (pI)

51.97

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 50
AccI GTMKAC 1 cut(s) 188
AccII CGCG 2 cut(s) 823, 1192
AcsI RAATTY 1 cut(s) 76
AcyI GRCGYC 1 cut(s) 779
AfaI GTAC 4 cut(s) 224, 395, 624, 1053
AfeI AGCGCT 1 cut(s) 111
AfiI CCNNNNNNNGG 2 cut(s) 251, 445
AgsI TTSAA 2 cut(s) 521, 865
AleI CACNNNNGTG 1 cut(s) 1007
Alw21I GWGCWC 4 cut(s) 343, 692, 914, 989
Alw26I GTCTC 3 cut(s) 142, 725, 1055
Alw44I GTGCAC 1 cut(s) 985
AlwNI CAGNNNCTG 1 cut(s) 355
Ama87I CYCGRG 1 cut(s) 336
Aor51HI AGCGCT 1 cut(s) 111
AoxI GGCC 4 cut(s) 93, 627, 831, 1148
ApaLI GTGCAC 1 cut(s) 985
ApoI RAATTY 1 cut(s) 76
AspA2I CCTAGG 1 cut(s) 182
AspLEI GCGC 3 cut(s) 112, 825, 1194
AspS9I GGNCC 3 cut(s) 94, 627, 636
AsuC2I CCSGG 1 cut(s) 377
AsuHPI GGTGA 1 cut(s) 593
AsuNHI GCTAGC 1 cut(s) 703
AvaI CYCGRG 1 cut(s) 336
AvaII GGWCC 1 cut(s) 636
AvrII CCTAGG 1 cut(s) 182
BaeGI GKGCMC 1 cut(s) 989
BanII GRGCYC 1 cut(s) 692
BbsI GAAGAC 1 cut(s) 309
Bbv12I GWGCWC 4 cut(s) 343, 692, 914, 989
BccI CCATC 5 cut(s) 224, 572, 584, 730, 768
BceAI ACGGC 3 cut(s) 325, 342, 614
BcgI CGANNNNNNTGC 2 cut(s) 480, 514
BcnI CCSGG 1 cut(s) 377
BcoDI GTCTC 3 cut(s) 142, 725, 1055
BfaI CTAG 4 cut(s) 113, 183, 704, 789
BfmI CTRYAG 2 cut(s) 330, 827
BfoI RGCGCY 1 cut(s) 113
BlnI CCTAGG 1 cut(s) 182
BlpI GCTNAGC 1 cut(s) 1038
BmcAI AGTACT 1 cut(s) 1053
Bme1390I CCNGG 1 cut(s) 377
Bme18I GGWCC 1 cut(s) 636
BmeT110I CYCGRG 1 cut(s) 336
BmgT120I GGNCC 3 cut(s) 94, 627, 636
BmiI GGNNCC 1 cut(s) 1115
BmrFI CCNGG 1 cut(s) 377
BmsI GCATC 3 cut(s) 573, 936, 1032
BmtI GCTAGC 1 cut(s) 707
BpiI GAAGAC 1 cut(s) 309
BpmI CTGGAG 1 cut(s) 1064
Bpu1102I GCTNAGC 1 cut(s) 1038
BpuMI CCSGG 1 cut(s) 377
BsaHI GRCGYC 1 cut(s) 779
BsaI GGTCTC 1 cut(s) 1055
BsaJI CCNNGG 3 cut(s) 182, 397, 837
BsaXI ACNNNNNCTCC 1 cut(s) 29
Bsc4I CCNNNNNNNGG 2 cut(s) 251, 445
Bse1I ACTGG 1 cut(s) 1059
Bse3DI GCAATG 1 cut(s) 1003
BseDI CCNNGG 3 cut(s) 182, 397, 837
BseGI GGATG 1 cut(s) 895
BseLI CCNNNNNNNGG 2 cut(s) 251, 445
BseMI GCAATG 1 cut(s) 1003
BseMII CTCAG 2 cut(s) 720, 1029
BseNI ACTGG 1 cut(s) 1059
BseRI GAGGAG 4 cut(s) 18, 700, 784, 1126
BseSI GKGCMC 1 cut(s) 989
Bsh1236I CGCG 2 cut(s) 823, 1192
Bsh1285I CGRYCG 1 cut(s) 363
BshFI GGCC 4 cut(s) 95, 629, 833, 1150
BsiEI CGRYCG 1 cut(s) 363
BsiHKAI GWGCWC 4 cut(s) 343, 692, 914, 989
BsiHKCI CYCGRG 1 cut(s) 336
BsiSI CCGG 1 cut(s) 377
BslI CCNNNNNNNGG 2 cut(s) 251, 445
BsmAI GTCTC 3 cut(s) 142, 725, 1055
BsmBI CGTCTC 2 cut(s) 142, 725
BsmI GAATGC 1 cut(s) 957
BsnI GGCC 4 cut(s) 95, 629, 833, 1150
Bso31I GGTCTC 1 cut(s) 1055
BsoBI CYCGRG 1 cut(s) 336
Bsp1286I GDGCHC 4 cut(s) 343, 692, 914, 989
Bsp143I GATC 3 cut(s) 360, 407, 1087
Bsp1720I GCTNAGC 1 cut(s) 1038
BspANI GGCC 4 cut(s) 95, 629, 833, 1150
BspCNI CTCAG 2 cut(s) 721, 1030
BspFNI CGCG 2 cut(s) 823, 1192
BspLI GGNNCC 1 cut(s) 1115
BspMAI CTGCAG 1 cut(s) 831
BspOI GCTAGC 1 cut(s) 707
BspTNI GGTCTC 1 cut(s) 1055
BsrDI GCAATG 1 cut(s) 1003
BsrI ACTGG 1 cut(s) 1059
BssECI CCNNGG 3 cut(s) 182, 397, 837
BssMI GATC 3 cut(s) 360, 407, 1087
BssNI GRCGYC 1 cut(s) 779
BssT1I CCWWGG 3 cut(s) 182, 397, 837
Bst4CI ACNGT 2 cut(s) 357, 481
Bst6I CTCTTC 4 cut(s) 65, 145, 1053, 1144
BstACI GRCGYC 1 cut(s) 779
BstDEI CTNAG 2 cut(s) 729, 1038
BstF5I GGATG 1 cut(s) 895
BstFNI CGCG 2 cut(s) 823, 1192
BstH2I RGCGCY 1 cut(s) 113
BstHHI GCGC 3 cut(s) 112, 825, 1194
BstKTI GATC 3 cut(s) 363, 410, 1090
BstMAI GTCTC 3 cut(s) 142, 725, 1055
BstMBI GATC 3 cut(s) 360, 407, 1087
BstMCI CGRYCG 1 cut(s) 363
BstMWI GCNNNNNNNGC 7 cut(s) 318, 561, 567, 570, 826, 993, 1169
BstNSI RCATGY 1 cut(s) 1163
BstSCI CCNGG 1 cut(s) 375
BstSFI CTRYAG 2 cut(s) 330, 827
BstSLI GKGCMC 1 cut(s) 989
BstUI CGCG 2 cut(s) 823, 1192
BstV2I GAAGAC 1 cut(s) 309
BstXI CCANNNNNNTGG 1 cut(s) 880
BsuRI GGCC 4 cut(s) 95, 629, 833, 1150
BtgZI GCGATG 1 cut(s) 591
BtsCI GGATG 1 cut(s) 895
BtsIMutI CAGTG 1 cut(s) 1002
CaiI CAGNNNCTG 1 cut(s) 355
CfoI GCGC 3 cut(s) 112, 825, 1194
Cfr13I GGNCC 3 cut(s) 94, 627, 636
CpoI CGGWCCG 1 cut(s) 636
CseI GACGC 2 cut(s) 452, 768
Csp6I GTAC 4 cut(s) 223, 394, 623, 1052
CspI CGGWCCG 1 cut(s) 636
CviAII CATG 1 cut(s) 1160
CviQI GTAC 4 cut(s) 223, 394, 623, 1052
DdeI CTNAG 2 cut(s) 729, 1038
DpnI GATC 3 cut(s) 362, 409, 1089
DpnII GATC 3 cut(s) 360, 407, 1087
DraI TTTAAA 1 cut(s) 177
Eam1104I CTCTTC 4 cut(s) 65, 145, 1053, 1144
EarI CTCTTC 4 cut(s) 65, 145, 1053, 1144
EciI GGCGGA 3 cut(s) 276, 710, 725
Ecl136II GAGCTC 1 cut(s) 690
Eco130I CCWWGG 3 cut(s) 182, 397, 837
Eco147I AGGCCT 1 cut(s) 833
Eco24I GRGCYC 1 cut(s) 692
Eco31I GGTCTC 1 cut(s) 1055
Eco47I GGWCC 1 cut(s) 636
Eco47III AGCGCT 1 cut(s) 111
Eco53kI GAGCTC 1 cut(s) 690
Eco88I CYCGRG 1 cut(s) 336
EcoICRI GAGCTC 1 cut(s) 690
EcoRI GAATTC 1 cut(s) 76
EcoT14I CCWWGG 3 cut(s) 182, 397, 837
EcoT38I GRGCYC 1 cut(s) 692
ErhI CCWWGG 3 cut(s) 182, 397, 837
Esp3I CGTCTC 2 cut(s) 142, 725
FaeI CATG 1 cut(s) 1163
FatI CATG 1 cut(s) 1159
FauI CCCGC 5 cut(s) 292, 395, 548, 637, 671
FblI GTMKAC 1 cut(s) 188
FokI GGATG 1 cut(s) 902
FriOI GRGCYC 1 cut(s) 692
FspBI CTAG 4 cut(s) 113, 183, 704, 789
GlaI GCGC 3 cut(s) 111, 824, 1193
GsuI CTGGAG 1 cut(s) 1064
HaeII RGCGCY 1 cut(s) 113
HaeIII GGCC 4 cut(s) 95, 629, 833, 1150
HapII CCGG 1 cut(s) 377
HgaI GACGC 2 cut(s) 452, 768
HhaI GCGC 3 cut(s) 112, 825, 1194
Hin1I GRCGYC 1 cut(s) 779
Hin1II CATG 1 cut(s) 1163
Hin6I GCGC 3 cut(s) 110, 823, 1192
HinP1I GCGC 3 cut(s) 110, 823, 1192
HincII GTYRAC 1 cut(s) 189
HindII GTYRAC 1 cut(s) 189
HinfI GANTC 6 cut(s) 203, 472, 505, 599, 761, 973
HpaII CCGG 1 cut(s) 377
HphI GGTGA 1 cut(s) 593
Hpy166II GTNNAC 3 cut(s) 189, 657, 987
Hpy188I TCNGA 1 cut(s) 1144
Hpy188III TCNNGA 3 cut(s) 536, 844, 1091
Hpy8I GTNNAC 3 cut(s) 189, 657, 987
Hpy99I CGWCG 2 cut(s) 19, 311
HpyAV CCTTC 3 cut(s) 154, 244, 655
HpyCH4III ACNGT 2 cut(s) 357, 481
HpyCH4IV ACGT 1 cut(s) 423
HpyCH4V TGCA 4 cut(s) 87, 829, 955, 987
HpyF10VI GCNNNNNNNGC 7 cut(s) 318, 561, 567, 570, 826, 993, 1169
HpyF3I CTNAG 2 cut(s) 729, 1038
HpySE526I ACGT 1 cut(s) 423
Hsp92I GRCGYC 1 cut(s) 779
Hsp92II CATG 1 cut(s) 1163
HspAI GCGC 3 cut(s) 110, 823, 1192
Kzo9I GATC 3 cut(s) 360, 407, 1087
LmnI GCTCC 5 cut(s) 389, 687, 712, 1119, 1139
LweI GCATC 3 cut(s) 573, 936, 1032
MaeI CTAG 4 cut(s) 113, 183, 704, 789
MaeII ACGT 1 cut(s) 423
MalI GATC 3 cut(s) 362, 409, 1089
MboI GATC 3 cut(s) 360, 407, 1087
MboII GAAGA 9 cut(s) 52, 132, 276, 314, 905, 1070, 1094, 1097, 1131
MhlI GDGCHC 4 cut(s) 343, 692, 914, 989
MluCI AATT 5 cut(s) 76, 1121, 1153, 1206, 1213
MlyI GAGTC 2 cut(s) 499, 770
MseI TTAA 1 cut(s) 176
MslI CAYNNNNRTG 1 cut(s) 1007
MspA1I CMGCKG 3 cut(s) 297, 315, 675
MspI CCGG 1 cut(s) 377
MspR9I CCNGG 1 cut(s) 377
Mva1269I GAATGC 1 cut(s) 957
MvnI CGCG 2 cut(s) 823, 1192
MwoI GCNNNNNNNGC 7 cut(s) 318, 561, 567, 570, 826, 993, 1169
NciI CCSGG 1 cut(s) 377
NdeII GATC 3 cut(s) 360, 407, 1087
NheI GCTAGC 1 cut(s) 703
NlaIII CATG 1 cut(s) 1163
NlaIV GGNNCC 1 cut(s) 1115
NmeAIII GCCGAG 2 cut(s) 671, 841
NspI RCATGY 1 cut(s) 1163
OliI CACNNNNGTG 1 cut(s) 1007
PaeR7I CTCGAG 1 cut(s) 336
PceI AGGCCT 1 cut(s) 833
PcsI WCGNNNNNNNCGW 1 cut(s) 573
PctI GAATGC 1 cut(s) 957
PfeI GAWTC 4 cut(s) 203, 472, 599, 973
Ple19I CGATCG 1 cut(s) 363
PleI GAGTC 2 cut(s) 499, 769
PpsI GAGTC 2 cut(s) 499, 769
PsiI TTATAA 1 cut(s) 50
Psp124BI GAGCTC 1 cut(s) 692
PspN4I GGNNCC 1 cut(s) 1115
PspPI GGNCC 3 cut(s) 94, 627, 636
PspXI VCTCGAGB 1 cut(s) 336
PsrI GAACNNNNNNTAC 2 cut(s) 615, 647
PstI CTGCAG 1 cut(s) 831
PstNI CAGNNNCTG 1 cut(s) 355
PvuI CGATCG 1 cut(s) 363
RsaI GTAC 4 cut(s) 224, 395, 624, 1053
RsaNI GTAC 4 cut(s) 223, 394, 623, 1052
RseI CAYNNNNRTG 1 cut(s) 1007
Rsr2I CGGWCCG 1 cut(s) 636
RsrII CGGWCCG 1 cut(s) 636
SacI GAGCTC 1 cut(s) 692
SalI GTCGAC 1 cut(s) 187
SaqAI TTAA 1 cut(s) 176
Sau3AI GATC 3 cut(s) 360, 407, 1087
Sau96I GGNCC 3 cut(s) 94, 627, 636
SbfI CCTGCAGG 1 cut(s) 831
ScaI AGTACT 1 cut(s) 1053
SchI GAGTC 2 cut(s) 499, 770
ScrFI CCNGG 1 cut(s) 377
SdaI CCTGCAGG 1 cut(s) 831
SduI GDGCHC 4 cut(s) 343, 692, 914, 989
SfaNI GCATC 3 cut(s) 573, 936, 1032
SfcI CTRYAG 2 cut(s) 330, 827
Sfr274I CTCGAG 1 cut(s) 336
SinI GGWCC 1 cut(s) 636
SlaI CTCGAG 1 cut(s) 336
SmiMI CAYNNNNRTG 1 cut(s) 1007
SmlI CTYRAG 1 cut(s) 336
SmoI CTYRAG 1 cut(s) 336
Sse8387I CCTGCAGG 1 cut(s) 831
Sse9I AATT 5 cut(s) 76, 1121, 1153, 1206, 1213
SseBI AGGCCT 1 cut(s) 833
SspMI CTAG 4 cut(s) 113, 183, 704, 789
SstI GAGCTC 1 cut(s) 692
StuI AGGCCT 1 cut(s) 833
StyD4I CCNGG 1 cut(s) 375
StyI CCWWGG 3 cut(s) 182, 397, 837
TaaI ACNGT 2 cut(s) 357, 481
TaiI ACGT 1 cut(s) 426
TaqI TCGA 7 cut(s) 188, 337, 359, 406, 500, 537, 683
TaqII GACCGA 1 cut(s) 624
TasI AATT 5 cut(s) 76, 1121, 1153, 1206, 1213
TatI WGTACW 1 cut(s) 1051
TfiI GAWTC 4 cut(s) 203, 472, 599, 973
Tru1I TTAA 1 cut(s) 176
Tru9I TTAA 1 cut(s) 176
TscAI CASTG 1 cut(s) 1009
TspDTI ATGAA 3 cut(s) 216, 906, 1206
TspGWI ACGGA 2 cut(s) 628, 966
TspRI CASTG 1 cut(s) 1009
VneI GTGCAC 1 cut(s) 985
VpaK11BI GGWCC 1 cut(s) 636
XapI RAATTY 1 cut(s) 76
XceI RCATGY 1 cut(s) 1163
XcmI CCANNNNNNNNNTGG 2 cut(s) 88, 1072
XhoI CTCGAG 1 cut(s) 336
XmaJI CCTAGG 1 cut(s) 182
XmiI GTMKAC 1 cut(s) 188
XspI CTAG 4 cut(s) 113, 183, 704, 789
ZrmI AGTACT 1 cut(s) 1053
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.