RchiOBHm_Chr6g0269191

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0010139
Physical Location & Seq
Forward (+)
26444513 .. 26446888
2376 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ24146

Sequence Viewer

Length: 1218 bp
ATGATGGAGAGTTCGTCGTCCATAACTCCTTTGCTTTTCCGCAACCTTGTAACCTCCCTCCTCCTTCTGGCAGAGAATTCCATTTGCAGCTTGGCCCAAAAACACAAAGCCCTAGAACTCATACGCTGCGTTTTCGTCTCTTCCTTCCTCTTTTTCCTGCGTTTGCTTCTTTCTTTAAACCCTAGGTCGACCAACAATAATGAATCCCCCTATTCCATCTTGTACGACTATAAAGACAAGCCTCCCAAGAAGGGTATTGGAGGAAGAAATCACAAGTATATGCCCGCAGCTATCAGCGGAGACGACGACGGCAGCGGCAGCGACACGGCTATAGCTCGAGCACTTTCGCAGCTACTGTCGATCGTCAATAATATCCCGGTAAGTTCCCGCAAGTACCAAGGTGTTCGATCTTTAGCGGAGAACGTCATCTATGACAACCAGAGAGAGGGCGTGGAGGCTTTGCGTCAAGTGAATCGCACGGTTCTGTCGGCAGCGTTTTCGAGGACTCTCAGCCAGCTTGAAGCCGCCGCAACTCTCGAACAGCAGCAGGGCGGCGAGGGCGGCGGCGATGGTGATATTGATGGTTTGGATTCTGGTCATCATCATTGGATAGTACGGGCCGTTCGGTCCGTTGCGGGCGTGGTGTGGACGAAGGGGGTTAGCAGCGGCGGGTCGAGGAGCTCGGCGGAGAAGCTAGCGGCGGAGCTGCTCTGGTTGGCTGAGACGATGGCGGCTTGTGGCTTTGCTAAAGAGTCTGTGAGGAGATGGGCGTCAGCCTCTAGTATGGCTCGCCTCTCTCTTTCAGCCGAGCCGCGCCTGCAGGCCTCCTTAGTCAAGATTACAGCATTGTTGTTGAAGTATGCTAAAGATATGGGAGTGGATGAAGATGATGATAATGAGAGCACGAAAGATCAGCAAGAAAGAAAACAAGCAAAGATGCAGATGCAGATGCAGATGTTGGTGTTGTGGATTCCGTTGCTGTGCACAGCCAGCAATGGCACTGATGTGCCTGTTTTGAGCATCAGCGAAAGGGCTGAGCTGGAGAGAGTACTGGAAGAGACCATAGAGAAGCTGGCAGAAGAAGATCAAGAGCGAGTTCTATCCTTGTGGCTCCACCAATTCACATATTGCTCCTCTTCTGATTGGCCTAATTTACATGCCTCGTATGCTCGCTGGTGTAATGCTTCGCGCAAGCACTTGCTAATTCACAATTCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

405

Amino Acids

44.74

Weight (kDa)

6.34

Isoelectric Point (pI)

50.98

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 188
AccII CGCG 2 cut(s) 814, 1189
AcsI RAATTY 1 cut(s) 76
AcyI GRCGYC 1 cut(s) 770
AfaI GTAC 4 cut(s) 224, 395, 615, 1050
AfiI CCNNNNNNNGG 3 cut(s) 67, 251, 445
AgsI TTSAA 2 cut(s) 521, 856
AleI CACNNNNGTG 1 cut(s) 1004
Alw21I GWGCWC 4 cut(s) 343, 683, 905, 986
Alw26I GTCTC 4 cut(s) 142, 294, 716, 1052
Alw44I GTGCAC 1 cut(s) 982
AlwNI CAGNNNCTG 1 cut(s) 355
Ama87I CYCGRG 1 cut(s) 336
AoxI GGCC 4 cut(s) 93, 618, 822, 1145
ApaLI GTGCAC 1 cut(s) 982
ApoI RAATTY 1 cut(s) 76
AspA2I CCTAGG 1 cut(s) 182
AspLEI GCGC 2 cut(s) 816, 1191
AspS9I GGNCC 3 cut(s) 94, 618, 627
AsuC2I CCSGG 1 cut(s) 377
AsuHPI GGTGA 1 cut(s) 584
AsuNHI GCTAGC 1 cut(s) 694
AvaI CYCGRG 1 cut(s) 336
AvaII GGWCC 1 cut(s) 627
AvrII CCTAGG 1 cut(s) 182
BaeGI GKGCMC 1 cut(s) 986
BanII GRGCYC 1 cut(s) 683
Bbv12I GWGCWC 4 cut(s) 343, 683, 905, 986
BccI CCATC 5 cut(s) 224, 563, 575, 721, 759
BceAI ACGGC 3 cut(s) 325, 342, 605
BcgI CGANNNNNNTGC 2 cut(s) 480, 514
BcnI CCSGG 1 cut(s) 377
BcoDI GTCTC 4 cut(s) 142, 294, 716, 1052
BfaI CTAG 4 cut(s) 113, 183, 695, 780
BfmI CTRYAG 2 cut(s) 330, 818
BlnI CCTAGG 1 cut(s) 182
BlpI GCTNAGC 1 cut(s) 1035
BmcAI AGTACT 1 cut(s) 1050
Bme1390I CCNGG 1 cut(s) 377
Bme18I GGWCC 1 cut(s) 627
BmeT110I CYCGRG 1 cut(s) 336
BmgT120I GGNCC 3 cut(s) 94, 618, 627
BmiI GGNNCC 1 cut(s) 1112
BmrFI CCNGG 1 cut(s) 377
BmsI GCATC 4 cut(s) 927, 933, 939, 1029
BmtI GCTAGC 1 cut(s) 698
BpmI CTGGAG 1 cut(s) 1061
Bpu1102I GCTNAGC 1 cut(s) 1035
BpuMI CCSGG 1 cut(s) 377
BsaHI GRCGYC 1 cut(s) 770
BsaI GGTCTC 1 cut(s) 1052
BsaJI CCNNGG 2 cut(s) 182, 397
BsaXI ACNNNNNCTCC 1 cut(s) 29
Bsc4I CCNNNNNNNGG 3 cut(s) 67, 251, 445
Bse1I ACTGG 1 cut(s) 1056
Bse3DI GCAATG 1 cut(s) 1000
BseDI CCNNGG 2 cut(s) 182, 397
BseGI GGATG 1 cut(s) 886
BseLI CCNNNNNNNGG 3 cut(s) 67, 251, 445
BseMI GCAATG 1 cut(s) 1000
BseMII CTCAG 3 cut(s) 523, 711, 1026
BseNI ACTGG 1 cut(s) 1056
BseRI GAGGAG 4 cut(s) 50, 691, 775, 1123
BseSI GKGCMC 1 cut(s) 986
Bsh1236I CGCG 2 cut(s) 814, 1189
Bsh1285I CGRYCG 1 cut(s) 363
BshFI GGCC 4 cut(s) 95, 620, 824, 1147
BsiEI CGRYCG 1 cut(s) 363
BsiHKAI GWGCWC 4 cut(s) 343, 683, 905, 986
BsiHKCI CYCGRG 1 cut(s) 336
BsiSI CCGG 1 cut(s) 377
BslI CCNNNNNNNGG 3 cut(s) 67, 251, 445
BsmAI GTCTC 4 cut(s) 142, 294, 716, 1052
BsmBI CGTCTC 3 cut(s) 142, 294, 716
BsnI GGCC 4 cut(s) 95, 620, 824, 1147
Bso31I GGTCTC 1 cut(s) 1052
BsoBI CYCGRG 1 cut(s) 336
Bsp1286I GDGCHC 4 cut(s) 343, 683, 905, 986
Bsp143I GATC 4 cut(s) 360, 407, 910, 1084
Bsp1720I GCTNAGC 1 cut(s) 1035
BspANI GGCC 4 cut(s) 95, 620, 824, 1147
BspCNI CTCAG 3 cut(s) 522, 712, 1027
BspFNI CGCG 2 cut(s) 814, 1189
BspLI GGNNCC 1 cut(s) 1112
BspMAI CTGCAG 1 cut(s) 822
BspOI GCTAGC 1 cut(s) 698
BspTNI GGTCTC 1 cut(s) 1052
BsrDI GCAATG 1 cut(s) 1000
BsrI ACTGG 1 cut(s) 1056
BssECI CCNNGG 2 cut(s) 182, 397
BssMI GATC 4 cut(s) 360, 407, 910, 1084
BssNI GRCGYC 1 cut(s) 770
BssT1I CCWWGG 2 cut(s) 182, 397
Bst4CI ACNGT 2 cut(s) 357, 481
Bst6I CTCTTC 3 cut(s) 145, 1050, 1141
BstACI GRCGYC 1 cut(s) 770
BstDEI CTNAG 4 cut(s) 509, 720, 829, 1035
BstF5I GGATG 1 cut(s) 886
BstFNI CGCG 2 cut(s) 814, 1189
BstHHI GCGC 2 cut(s) 816, 1191
BstKTI GATC 4 cut(s) 363, 410, 913, 1087
BstMAI GTCTC 4 cut(s) 142, 294, 716, 1052
BstMBI GATC 4 cut(s) 360, 407, 910, 1084
BstMCI CGRYCG 1 cut(s) 363
BstMWI GCNNNNNNNGC 6 cut(s) 318, 558, 561, 817, 990, 1166
BstNSI RCATGY 1 cut(s) 1160
BstSCI CCNGG 1 cut(s) 375
BstSFI CTRYAG 2 cut(s) 330, 818
BstSLI GKGCMC 1 cut(s) 986
BstUI CGCG 2 cut(s) 814, 1189
BsuRI GGCC 4 cut(s) 95, 620, 824, 1147
BtgZI GCGATG 1 cut(s) 582
BtsCI GGATG 1 cut(s) 886
BtsIMutI CAGTG 1 cut(s) 999
CaiI CAGNNNCTG 1 cut(s) 355
CfoI GCGC 2 cut(s) 816, 1191
Cfr13I GGNCC 3 cut(s) 94, 618, 627
CpoI CGGWCCG 1 cut(s) 627
CseI GACGC 2 cut(s) 452, 759
Csp6I GTAC 4 cut(s) 223, 394, 614, 1049
CspI CGGWCCG 1 cut(s) 627
CviAII CATG 1 cut(s) 1157
CviQI GTAC 4 cut(s) 223, 394, 614, 1049
DdeI CTNAG 4 cut(s) 509, 720, 829, 1035
DpnI GATC 4 cut(s) 362, 409, 912, 1086
DpnII GATC 4 cut(s) 360, 407, 910, 1084
DraI TTTAAA 1 cut(s) 177
Eam1104I CTCTTC 3 cut(s) 145, 1050, 1141
EarI CTCTTC 3 cut(s) 145, 1050, 1141
EciI GGCGGA 2 cut(s) 701, 716
Ecl136II GAGCTC 1 cut(s) 681
Eco130I CCWWGG 2 cut(s) 182, 397
Eco147I AGGCCT 1 cut(s) 824
Eco24I GRGCYC 1 cut(s) 683
Eco31I GGTCTC 1 cut(s) 1052
Eco47I GGWCC 1 cut(s) 627
Eco53kI GAGCTC 1 cut(s) 681
Eco88I CYCGRG 1 cut(s) 336
EcoICRI GAGCTC 1 cut(s) 681
EcoRI GAATTC 1 cut(s) 76
EcoT14I CCWWGG 2 cut(s) 182, 397
EcoT38I GRGCYC 1 cut(s) 683
ErhI CCWWGG 2 cut(s) 182, 397
Esp3I CGTCTC 3 cut(s) 142, 294, 716
FaeI CATG 1 cut(s) 1160
FatI CATG 1 cut(s) 1156
FauI CCCGC 4 cut(s) 292, 395, 628, 662
FblI GTMKAC 1 cut(s) 188
FokI GGATG 1 cut(s) 893
FriOI GRGCYC 1 cut(s) 683
FspBI CTAG 4 cut(s) 113, 183, 695, 780
GlaI GCGC 2 cut(s) 815, 1190
GsuI CTGGAG 1 cut(s) 1061
HaeIII GGCC 4 cut(s) 95, 620, 824, 1147
HapII CCGG 1 cut(s) 377
HgaI GACGC 2 cut(s) 452, 759
HhaI GCGC 2 cut(s) 816, 1191
Hin1I GRCGYC 1 cut(s) 770
Hin1II CATG 1 cut(s) 1160
Hin6I GCGC 2 cut(s) 814, 1189
HinP1I GCGC 2 cut(s) 814, 1189
HincII GTYRAC 1 cut(s) 189
HindII GTYRAC 1 cut(s) 189
HinfI GANTC 6 cut(s) 203, 472, 505, 590, 752, 970
HpaII CCGG 1 cut(s) 377
HphI GGTGA 1 cut(s) 584
Hpy166II GTNNAC 3 cut(s) 189, 648, 984
Hpy188I TCNGA 1 cut(s) 1141
Hpy188III TCNNGA 3 cut(s) 536, 835, 1088
Hpy8I GTNNAC 3 cut(s) 189, 648, 984
Hpy99I CGWCG 3 cut(s) 19, 308, 311
HpyAV CCTTC 4 cut(s) 74, 154, 244, 646
HpyCH4III ACNGT 2 cut(s) 357, 481
HpyCH4IV ACGT 1 cut(s) 423
HpyCH4V TGCA 6 cut(s) 87, 820, 940, 946, 952, 984
HpyF10VI GCNNNNNNNGC 6 cut(s) 318, 558, 561, 817, 990, 1166
HpyF3I CTNAG 4 cut(s) 509, 720, 829, 1035
HpySE526I ACGT 1 cut(s) 423
Hsp92I GRCGYC 1 cut(s) 770
Hsp92II CATG 1 cut(s) 1160
HspAI GCGC 2 cut(s) 814, 1189
Kzo9I GATC 4 cut(s) 360, 407, 910, 1084
LmnI GCTCC 4 cut(s) 678, 703, 1116, 1136
LweI GCATC 4 cut(s) 927, 933, 939, 1029
MaeI CTAG 4 cut(s) 113, 183, 695, 780
MaeII ACGT 1 cut(s) 423
MaeIII GTNAC 1 cut(s) 49
MalI GATC 4 cut(s) 362, 409, 912, 1086
MboI GATC 4 cut(s) 360, 407, 910, 1084
MboII GAAGA 7 cut(s) 132, 276, 896, 1067, 1091, 1094, 1128
MhlI GDGCHC 4 cut(s) 343, 683, 905, 986
MluCI AATT 5 cut(s) 76, 1118, 1150, 1203, 1210
MlyI GAGTC 2 cut(s) 499, 761
MseI TTAA 1 cut(s) 176
MslI CAYNNNNRTG 1 cut(s) 1004
MspA1I CMGCKG 3 cut(s) 297, 315, 666
MspI CCGG 1 cut(s) 377
MspR9I CCNGG 1 cut(s) 377
MvnI CGCG 2 cut(s) 814, 1189
MwoI GCNNNNNNNGC 6 cut(s) 318, 558, 561, 817, 990, 1166
NciI CCSGG 1 cut(s) 377
NdeII GATC 4 cut(s) 360, 407, 910, 1084
NheI GCTAGC 1 cut(s) 694
NlaIII CATG 1 cut(s) 1160
NlaIV GGNNCC 1 cut(s) 1112
NmeAIII GCCGAG 2 cut(s) 662, 832
NspI RCATGY 1 cut(s) 1160
OliI CACNNNNGTG 1 cut(s) 1004
PaeR7I CTCGAG 1 cut(s) 336
PceI AGGCCT 1 cut(s) 824
PfeI GAWTC 4 cut(s) 203, 472, 590, 970
Ple19I CGATCG 1 cut(s) 363
PleI GAGTC 2 cut(s) 499, 760
PpsI GAGTC 2 cut(s) 499, 760
Psp124BI GAGCTC 1 cut(s) 683
PspN4I GGNNCC 1 cut(s) 1112
PspPI GGNCC 3 cut(s) 94, 618, 627
PspXI VCTCGAGB 1 cut(s) 336
PsrI GAACNNNNNNTAC 2 cut(s) 606, 638
PstI CTGCAG 1 cut(s) 822
PstNI CAGNNNCTG 1 cut(s) 355
PvuI CGATCG 1 cut(s) 363
RsaI GTAC 4 cut(s) 224, 395, 615, 1050
RsaNI GTAC 4 cut(s) 223, 394, 614, 1049
RseI CAYNNNNRTG 1 cut(s) 1004
Rsr2I CGGWCCG 1 cut(s) 627
RsrII CGGWCCG 1 cut(s) 627
SacI GAGCTC 1 cut(s) 683
SalI GTCGAC 1 cut(s) 187
SaqAI TTAA 1 cut(s) 176
Sau3AI GATC 4 cut(s) 360, 407, 910, 1084
Sau96I GGNCC 3 cut(s) 94, 618, 627
SbfI CCTGCAGG 1 cut(s) 822
ScaI AGTACT 1 cut(s) 1050
SchI GAGTC 2 cut(s) 499, 761
ScrFI CCNGG 1 cut(s) 377
SdaI CCTGCAGG 1 cut(s) 822
SduI GDGCHC 4 cut(s) 343, 683, 905, 986
SfaNI GCATC 4 cut(s) 927, 933, 939, 1029
SfcI CTRYAG 2 cut(s) 330, 818
Sfr274I CTCGAG 1 cut(s) 336
SinI GGWCC 1 cut(s) 627
SlaI CTCGAG 1 cut(s) 336
SmiMI CAYNNNNRTG 1 cut(s) 1004
SmlI CTYRAG 1 cut(s) 336
SmoI CTYRAG 1 cut(s) 336
Sse8387I CCTGCAGG 1 cut(s) 822
Sse9I AATT 5 cut(s) 76, 1118, 1150, 1203, 1210
SseBI AGGCCT 1 cut(s) 824
SspMI CTAG 4 cut(s) 113, 183, 695, 780
SstI GAGCTC 1 cut(s) 683
StuI AGGCCT 1 cut(s) 824
StyD4I CCNGG 1 cut(s) 375
StyI CCWWGG 2 cut(s) 182, 397
TaaI ACNGT 2 cut(s) 357, 481
TaiI ACGT 1 cut(s) 426
TaqI TCGA 7 cut(s) 188, 337, 359, 406, 500, 537, 674
TaqII GACCGA 1 cut(s) 615
TasI AATT 5 cut(s) 76, 1118, 1150, 1203, 1210
TatI WGTACW 1 cut(s) 1048
TfiI GAWTC 4 cut(s) 203, 472, 590, 970
Tru1I TTAA 1 cut(s) 176
Tru9I TTAA 1 cut(s) 176
TscAI CASTG 1 cut(s) 1006
TspDTI ATGAA 3 cut(s) 216, 897, 1203
TspGWI ACGGA 2 cut(s) 619, 963
TspRI CASTG 1 cut(s) 1006
VneI GTGCAC 1 cut(s) 982
VpaK11BI GGWCC 1 cut(s) 627
XapI RAATTY 1 cut(s) 76
XceI RCATGY 1 cut(s) 1160
XcmI CCANNNNNNNNNTGG 2 cut(s) 88, 1069
XhoI CTCGAG 1 cut(s) 336
XmaJI CCTAGG 1 cut(s) 182
XmiI GTMKAC 1 cut(s) 188
XspI CTAG 4 cut(s) 113, 183, 695, 780
ZrmI AGTACT 1 cut(s) 1050
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.