Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0010139

Physical Location & Seq

Genomic Coordinates Reverse (-)

4209454 .. 4212920

Gene Structure 3467 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g03680.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1197 bp

ATGGTGATGATGGAAGGCTGGTCTCAAACTACCATATCTCCTTTGCTTCCCCGCAGCCTCATAGCCTCCCTCTTTATCTTCGCAGACAAATCCTTCGTAAACTTGTCTCAGAAATCTAAACTCCTCCAACTCCTTCGCTATACTTTCGTCACTTCCTTCCTCTTCCTCCTCCGTTTGCTTCCTCCTCTAAACCCTAACAATAACCAACCCTACAAGCCTCCCAACAAGAATGCTAGTAATCACACTAGTGATCATTATGATTATACGCCCGCCTCATTCAGCGGCGGTGCTACTATTACTGGCGGCGGCGACTCCGCTATCGCTCGAGCACTATCGCAGCTCTTGTCCCTCGTCAACGACATCCCCGTAAGCTCCCGCAAGTACCAAGTTGTTCGCTCTTTAGCGGAGAACCTCATCGACGACAACCACAAAGAGGGCGTAGAGGCTTTACGTCAAGTCAACCGTACGGTTCTATCCGCGGCTTTTTCCACCACTCTGAGCCAGCTTGAAGCTGCCGCCATTCTCGAACAACAAGGAGAAGTGCTGCGTGGTGATGGCGTCGATTTGTTGGGAAACGCTCGGCCGGTGGAGTACCGGTGGAGCCCTGTTCTACGGGTGGTTCGATCGATACGGGACGTGTCGTGGATAAGGGAGACGAGGGCGAGCGGGACGAGAAGCTCGGCGGAGAAACTGGCGGCTGAGGTGCTTTGGCTGGCTGAGAAGCTGGCAGCTTGTGACTCGGCTGATGAAGCAGTGCGGAGATGGGCCGCTGCCTTTAATTTGGCTCGTCTCTCTCTTTCGGTTGAGCCGCGCTTACAAGCATCCTTGGTGAAGACTTCGGCATTGTTGTTCAAGCATGCCAAACAGTTGGGAAAAGACGAAGCTGACGACGGAATCAAGAAAGAGCAACACAAGCAAACAAAGATGCAAATGTTAATGTCGTGGTTGCCATTGCTATGCAGAGCCAGCAACGGAACCGACGTCCCGGTTTTGAGCATCGCAGAAAGGACCGAGCTGGAGAGAGTATTGGAAGAGACGATCGAGATGCTGGAAGACGAAGAGAATCAAGAGAAAGTGCTGTCTTTGTGGCTCCACCACTTCACACATAGCTCGTTCTCTGATTGGCCCAACCTCCATGCCTCCTATGCTCGCTGGTGTAACACTTCTCGGAAGCTCTTGCTGCACCACCATGCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

399

Amino Acids

44.61

Weight (kDa)

7.79

Isoelectric Point (pI)

48.31

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010139)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G64230
fragaria_vesca	FvH4_2g10990 FvH4_2g10991
malus_domestica	MD05G1044100.v1.1 MD10G1051300.v1.1
prunus_persica	Prupe.8G059500_v2.0.a1 Prupe.8G059500_v2.0.a1 Prupe.8G059500_v2.0.a1
pyrus_communis	pycom05g03680 pycom10g03610
rosa_chinensis	RchiOBHm_Chr6g0269191
rosa_laevigata	RLG00000013873
rosa_multiflora	Rmu_sc0001891.1_g000055 Rmu_ssc0000381.1_g000001
rosa_roxburghii	Rroxscaffold_7G00198960
rosa_rugosa	Rorug06G0045800
rosa_samantha	Rh6AG166100 Rh6BG171600 Rh6CG165200 Rh6DG156800
rosa_wichuraiana	Rw6G014340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	984
AccBSI	CCGCTC	1 cut(s)	666
AccII	CGCG	2 cut(s)	479, 811
AcoI	YGGCCR	1 cut(s)	581
AcyI	GRCGYC	2 cut(s)	558, 981
AfaI	GTAC	3 cut(s)	383, 466, 593
AfiI	CCNNNNNNNGG	1 cut(s)	433
AflIII	ACRYGT	1 cut(s)	636
AgeI	ACCGGT	1 cut(s)	594
AgsI	TTSAA	2 cut(s)	509, 853
AhlI	ACTAGT	1 cut(s)	245
AjiI	CACGTC	1 cut(s)	637
AleI	CACNNNNGTG	1 cut(s)	246
Alw21I	GWGCWC	1 cut(s)	331
Alw26I	GTCTC	5 cut(s)	27, 111, 647, 794, 1028
Ama87I	CYCGRG	1 cut(s)	324
AoxI	GGCC	3 cut(s)	581, 765, 1124
ApeKI	GCWGC	7 cut(s)	54, 337, 512, 544, 728, 770, 1180
ArsI	GACNNNNNNTTYG	2 cut(s)	77, 109
AsiGI	ACCGGT	1 cut(s)	594
AspLEI	GCGC	1 cut(s)	813
AspS9I	GGNCC	3 cut(s)	765, 1008, 1125
AsuC2I	CCSGG	1 cut(s)	986
AsuHPI	GGTGA	3 cut(s)	16, 563, 841
AvaI	CYCGRG	1 cut(s)	324
AvaII	GGWCC	1 cut(s)	1008
BanII	GRGCYC	1 cut(s)	605
BbsI	GAAGAC	2 cut(s)	839, 1059
Bbv12I	GWGCWC	1 cut(s)	331
BbvCI	CCTCAGC	1 cut(s)	699
BbvI	GCAGC	7 cut(s)	66, 349, 499, 531, 740, 757, 1167
BccI	CCATC	3 cut(s)	4, 548, 756
BcgI	CGANNNNNNTGC	2 cut(s)	1027, 1061
BclI	TGATCA	1 cut(s)	250
BcnI	CCSGG	1 cut(s)	986
BcoDI	GTCTC	5 cut(s)	27, 111, 647, 794, 1028
BcuI	ACTAGT	1 cut(s)	245
BfaI	CTAG	2 cut(s)	234, 246
Bme1390I	CCNGG	1 cut(s)	986
Bme18I	GGWCC	1 cut(s)	1008
BmeT110I	CYCGRG	1 cut(s)	324
BmgBI	CACGTC	1 cut(s)	637
BmgT120I	GGNCC	3 cut(s)	765, 1008, 1125
BmiI	GGNNCC	3 cut(s)	602, 976, 1091
BmrFI	CCNGG	1 cut(s)	986
BmsI	GCATC	4 cut(s)	830, 915, 1005, 1035
BpiI	GAAGAC	2 cut(s)	839, 1059
BpmI	CTGGAG	1 cut(s)	1037
Bpu10I	CCTNAGC	1 cut(s)	699
BpuMI	CCSGG	1 cut(s)	986
Bsa29I	ATCGAT	1 cut(s)	626
BsaHI	GRCGYC	2 cut(s)	558, 981
BsaI	GGTCTC	1 cut(s)	27
BsaJI	CCNNGG	2 cut(s)	477, 825
BsaWI	WCCGGW	1 cut(s)	594
BsaXI	ACNNNNNCTCC	4 cut(s)	22, 52, 581, 611
Bsc4I	CCNNNNNNNGG	1 cut(s)	433
Bse118I	RCCGGY	2 cut(s)	583, 594
Bse1I	ACTGG	2 cut(s)	304, 696
Bse3DI	GCAATG	1 cut(s)	950
BseCI	ATCGAT	1 cut(s)	626
BseDI	CCNNGG	2 cut(s)	477, 825
BseGI	GGATG	2 cut(s)	360, 821
BseLI	CCNNNNNNNGG	1 cut(s)	433
BseMI	GCAATG	1 cut(s)	950
BseMII	CTCAG	4 cut(s)	122, 488, 690, 708
BseNI	ACTGG	2 cut(s)	304, 696
BseRI	GAGGAG	3 cut(s)	113, 158, 174
BseX3I	CGGCCG	1 cut(s)	581
BseXI	GCAGC	7 cut(s)	66, 349, 499, 531, 740, 757, 1167
BsgI	GTGCAG	1 cut(s)	1166
Bsh1236I	CGCG	2 cut(s)	479, 811
Bsh1285I	CGRYCG	3 cut(s)	584, 626, 1041
BshFI	GGCC	3 cut(s)	583, 767, 1126
BshTI	ACCGGT	1 cut(s)	594
BshVI	ATCGAT	1 cut(s)	626
BsiEI	CGRYCG	3 cut(s)	584, 626, 1041
BsiHKAI	GWGCWC	1 cut(s)	331
BsiHKCI	CYCGRG	1 cut(s)	324
BsiSI	CCGG	3 cut(s)	584, 595, 986
BsiWI	CGTACG	1 cut(s)	464
BslFI	GGGAC	4 cut(s)	331, 647, 682, 968
BslI	CCNNNNNNNGG	1 cut(s)	433
BsmAI	GTCTC	5 cut(s)	27, 111, 647, 794, 1028
BsmBI	CGTCTC	3 cut(s)	647, 794, 1028
BsmFI	GGGAC	4 cut(s)	331, 647, 682, 968
BsmI	GAATGC	1 cut(s)	235
BsnI	GGCC	3 cut(s)	583, 767, 1126
Bso31I	GGTCTC	1 cut(s)	27
BsoBI	CYCGRG	1 cut(s)	324
Bsp1286I	GDGCHC	2 cut(s)	331, 605
Bsp143I	GATC	3 cut(s)	250, 623, 1038
BspANI	GGCC	3 cut(s)	583, 767, 1126
BspCNI	CTCAG	4 cut(s)	121, 489, 691, 709
BspDI	ATCGAT	1 cut(s)	626
BspFNI	CGCG	2 cut(s)	479, 811
BspLI	GGNNCC	3 cut(s)	602, 976, 1091
BspTNI	GGTCTC	1 cut(s)	27
BsrBI	CCGCTC	1 cut(s)	666
BsrDI	GCAATG	1 cut(s)	950
BsrFI	RCCGGY	2 cut(s)	583, 594
BsrI	ACTGG	2 cut(s)	304, 696
BssAI	RCCGGY	2 cut(s)	583, 594
BssECI	CCNNGG	2 cut(s)	477, 825
BssMI	GATC	3 cut(s)	250, 623, 1038
BssNI	GRCGYC	2 cut(s)	558, 981
BssT1I	CCWWGG	1 cut(s)	825
Bst4CI	ACNGT	3 cut(s)	464, 469, 867
Bst6I	CTCTTC	3 cut(s)	167, 1026, 1053
BstACI	GRCGYC	2 cut(s)	558, 981
BstC8I	GCNNGC	8 cut(s)	270, 503, 664, 714, 726, 858, 967, 1150
BstDEI	CTNAG	4 cut(s)	108, 497, 699, 717
BstDSI	CCRYGG	1 cut(s)	477
BstF5I	GGATG	2 cut(s)	360, 821
BstFNI	CGCG	2 cut(s)	479, 811
BstHHI	GCGC	1 cut(s)	813
BstKTI	GATC	3 cut(s)	253, 626, 1041
BstMAI	GTCTC	5 cut(s)	27, 111, 647, 794, 1028
BstMBI	GATC	3 cut(s)	250, 623, 1038
BstMCI	CGRYCG	3 cut(s)	584, 626, 1041
BstMWI	GCNNNNNNNGC	5 cut(s)	749, 913, 966, 1145, 1180
BstNSI	RCATGY	1 cut(s)	860
BstSCI	CCNGG	1 cut(s)	984
BstUI	CGCG	2 cut(s)	479, 811
BstV1I	GCAGC	7 cut(s)	66, 349, 499, 531, 740, 757, 1167
BstV2I	GAAGAC	2 cut(s)	839, 1059
BstXI	CCANNNNNNTGG	1 cut(s)	868
BstZI	CGGCCG	1 cut(s)	581
Bsu15I	ATCGAT	1 cut(s)	626
BsuRI	GGCC	3 cut(s)	583, 767, 1126
BsuTUI	ATCGAT	1 cut(s)	626
BtgI	CCRYGG	1 cut(s)	477
BtgZI	GCGATG	1 cut(s)	982
BtrI	CACGTC	1 cut(s)	637
BtsCI	GGATG	2 cut(s)	360, 821
BtsI	GCAGTG	1 cut(s)	759
BtsIMutI	CAGTG	1 cut(s)	759
Cac8I	GCNNGC	8 cut(s)	270, 503, 664, 714, 726, 858, 967, 1150
CfoI	GCGC	1 cut(s)	813
Cfr10I	RCCGGY	2 cut(s)	583, 594
Cfr13I	GGNCC	3 cut(s)	765, 1008, 1125
Cfr42I	CCGCGG	1 cut(s)	480
ClaI	ATCGAT	1 cut(s)	626
CseI	GACGC	1 cut(s)	547
Csp6I	GTAC	3 cut(s)	382, 465, 592
CspAI	ACCGGT	1 cut(s)	594
CviAII	CATG	4 cut(s)	857, 1136, 1190, 1194
CviQI	GTAC	3 cut(s)	382, 465, 592
DdeI	CTNAG	4 cut(s)	108, 497, 699, 717
DpnI	GATC	3 cut(s)	252, 625, 1040
DpnII	GATC	3 cut(s)	250, 623, 1038
EaeI	YGGCCR	1 cut(s)	581
EagI	CGGCCG	1 cut(s)	581
Eam1104I	CTCTTC	3 cut(s)	167, 1026, 1053
EarI	CTCTTC	3 cut(s)	167, 1026, 1053
EciI	GGCGGA	1 cut(s)	698
EclXI	CGGCCG	1 cut(s)	581
Eco130I	CCWWGG	1 cut(s)	825
Eco24I	GRGCYC	1 cut(s)	605
Eco31I	GGTCTC	1 cut(s)	27
Eco47I	GGWCC	1 cut(s)	1008
Eco52I	CGGCCG	1 cut(s)	581
Eco88I	CYCGRG	1 cut(s)	324
EcoT14I	CCWWGG	1 cut(s)	825
EcoT22I	ATGCAT	1 cut(s)	1195
EcoT38I	GRGCYC	1 cut(s)	605
ErhI	CCWWGG	1 cut(s)	825
Esp3I	CGTCTC	3 cut(s)	647, 794, 1028
FaeI	CATG	4 cut(s)	860, 1139, 1193, 1197
FaqI	GGGAC	4 cut(s)	331, 647, 682, 968
FatI	CATG	4 cut(s)	856, 1135, 1189, 1193
FauI	CCCGC	4 cut(s)	59, 277, 383, 659
FbaI	TGATCA	1 cut(s)	250
FokI	GGATG	2 cut(s)	347, 808
FriOI	GRGCYC	1 cut(s)	605
FspBI	CTAG	2 cut(s)	234, 246
GlaI	GCGC	1 cut(s)	812
GsuI	CTGGAG	1 cut(s)	1037
HaeIII	GGCC	3 cut(s)	583, 767, 1126
HapII	CCGG	3 cut(s)	584, 595, 986
HgaI	GACGC	1 cut(s)	547
HhaI	GCGC	1 cut(s)	813
Hin1I	GRCGYC	2 cut(s)	558, 981
Hin1II	CATG	4 cut(s)	860, 1139, 1193, 1197
Hin6I	GCGC	1 cut(s)	811
HinP1I	GCGC	1 cut(s)	811
HincII	GTYRAC	2 cut(s)	355, 460
HindII	GTYRAC	2 cut(s)	355, 460
HinfI	GANTC	4 cut(s)	311, 737, 894, 1063
HpaII	CCGG	3 cut(s)	584, 595, 986
HphI	GGTGA	3 cut(s)	16, 563, 841
Hpy166II	GTNNAC	3 cut(s)	100, 355, 460
Hpy188I	TCNGA	4 cut(s)	111, 498, 1120, 1170
Hpy188III	TCNNGA	4 cut(s)	524, 898, 1042, 1067
Hpy8I	GTNNAC	3 cut(s)	100, 355, 460
Hpy99I	CGWCG	4 cut(s)	422, 563, 893, 983
HpyAV	CCTTC	4 cut(s)	8, 103, 143, 166
HpyCH4III	ACNGT	3 cut(s)	464, 469, 867
HpyCH4IV	ACGT	3 cut(s)	451, 636, 981
HpyCH4V	TGCA	4 cut(s)	928, 960, 1183, 1193
HpyF10VI	GCNNNNNNNGC	5 cut(s)	749, 913, 966, 1145, 1180
HpyF3I	CTNAG	4 cut(s)	108, 497, 699, 717
HpySE526I	ACGT	3 cut(s)	451, 636, 981
Hsp92I	GRCGYC	2 cut(s)	558, 981
Hsp92II	CATG	4 cut(s)	860, 1139, 1193, 1197
HspAI	GCGC	1 cut(s)	811
Ksp22I	TGATCA	1 cut(s)	250
KspI	CCGCGG	1 cut(s)	480
Kzo9I	GATC	3 cut(s)	250, 623, 1038
LmnI	GCTCC	3 cut(s)	377, 600, 1095
Lsp1109I	GCAGC	7 cut(s)	66, 349, 499, 531, 740, 757, 1167
LweI	GCATC	4 cut(s)	830, 915, 1005, 1035
MaeI	CTAG	2 cut(s)	234, 246
MaeII	ACGT	3 cut(s)	451, 636, 981
MaeIII	GTNAC	3 cut(s)	148, 734, 1157
MalI	GATC	3 cut(s)	252, 625, 1040
MbiI	CCGCTC	1 cut(s)	666
MboI	GATC	3 cut(s)	250, 623, 1038
MboII	GAAGA	6 cut(s)	70, 154, 844, 1043, 1064, 1070
MhlI	GDGCHC	2 cut(s)	331, 605
MluCI	AATT	1 cut(s)	778
MlyI	GAGTC	2 cut(s)	305, 731
MmeI	TCCRAC	1 cut(s)	151
Mph1103I	ATGCAT	1 cut(s)	1195
MseI	TTAA	2 cut(s)	777, 935
MslI	CAYNNNNRTG	3 cut(s)	246, 955, 1188
MspA1I	CMGCKG	3 cut(s)	282, 479, 770
MspI	CCGG	3 cut(s)	584, 595, 986
MspR9I	CCNGG	1 cut(s)	986
Mva1269I	GAATGC	1 cut(s)	235
MvnI	CGCG	2 cut(s)	479, 811
MwoI	GCNNNNNNNGC	5 cut(s)	749, 913, 966, 1145, 1180
NciI	CCSGG	1 cut(s)	986
NdeII	GATC	3 cut(s)	250, 623, 1038
NlaIII	CATG	4 cut(s)	860, 1139, 1193, 1197
NlaIV	GGNNCC	3 cut(s)	602, 976, 1091
NmeAIII	GCCGAG	3 cut(s)	559, 659, 719
NmuCI	GTSAC	2 cut(s)	148, 734
NsiI	ATGCAT	1 cut(s)	1195
NspI	RCATGY	1 cut(s)	860
OliI	CACNNNNGTG	1 cut(s)	246
PaeI	GCATGC	1 cut(s)	860
PaeR7I	CTCGAG	1 cut(s)	324
PcsI	WCGNNNNNNNCGW	4 cut(s)	363, 619, 885, 978
PctI	GAATGC	1 cut(s)	235
PfeI	GAWTC	2 cut(s)	894, 1063
Pfl23II	CGTACG	1 cut(s)	464
PinAI	ACCGGT	1 cut(s)	594
Ple19I	CGATCG	2 cut(s)	626, 1041
PleI	GAGTC	2 cut(s)	305, 731
PpsI	GAGTC	2 cut(s)	305, 731
PspLI	CGTACG	1 cut(s)	464
PspN4I	GGNNCC	3 cut(s)	602, 976, 1091
PspPI	GGNCC	3 cut(s)	765, 1008, 1125
PspXI	VCTCGAGB	1 cut(s)	324
PvuI	CGATCG	2 cut(s)	626, 1041
RsaI	GTAC	3 cut(s)	383, 466, 593
RsaNI	GTAC	3 cut(s)	382, 465, 592
RseI	CAYNNNNRTG	3 cut(s)	246, 955, 1188
SacII	CCGCGG	1 cut(s)	480
SaqAI	TTAA	2 cut(s)	777, 935
Sau3AI	GATC	3 cut(s)	250, 623, 1038
Sau96I	GGNCC	3 cut(s)	765, 1008, 1125
SchI	GAGTC	2 cut(s)	305, 731
ScrFI	CCNGG	1 cut(s)	986
SduI	GDGCHC	2 cut(s)	331, 605
SfaNI	GCATC	4 cut(s)	830, 915, 1005, 1035
Sfr274I	CTCGAG	1 cut(s)	324
Sfr303I	CCGCGG	1 cut(s)	480
SgrBI	CCGCGG	1 cut(s)	480
SinI	GGWCC	1 cut(s)	1008
SlaI	CTCGAG	1 cut(s)	324
SmiMI	CAYNNNNRTG	3 cut(s)	246, 955, 1188
SmlI	CTYRAG	1 cut(s)	324
SmoI	CTYRAG	1 cut(s)	324
SpeI	ACTAGT	1 cut(s)	245
SphI	GCATGC	1 cut(s)	860
Sse9I	AATT	1 cut(s)	778
SspMI	CTAG	2 cut(s)	234, 246
StyD4I	CCNGG	1 cut(s)	984
StyI	CCWWGG	1 cut(s)	825
TaaI	ACNGT	3 cut(s)	464, 469, 867
TaiI	ACGT	3 cut(s)	454, 639, 984
TaqI	TCGA	7 cut(s)	325, 417, 525, 561, 622, 626, 1041
TaqII	GACCGA	1 cut(s)	1025
TasI	AATT	1 cut(s)	778
TauI	GCSGC	8 cut(s)	285, 306, 309, 482, 518, 698, 770, 811
TfiI	GAWTC	2 cut(s)	894, 1063
Tru1I	TTAA	2 cut(s)	777, 935
Tru9I	TTAA	2 cut(s)	777, 935
TscAI	CASTG	1 cut(s)	759
TseFI	GTSAC	2 cut(s)	148, 734
TseI	GCWGC	7 cut(s)	54, 337, 512, 544, 728, 770, 1180
Tsp45I	GTSAC	2 cut(s)	148, 734
TspDTI	ATGAA	1 cut(s)	762
TspGWI	ACGGA	3 cut(s)	161, 906, 987
TspRI	CASTG	1 cut(s)	759
VpaK11BI	GGWCC	1 cut(s)	1008
XceI	RCATGY	1 cut(s)	860
XhoI	CTCGAG	1 cut(s)	324
XspI	CTAG	2 cut(s)	234, 246
ZraI	GACGTC	1 cut(s)	982
Zsp2I	ATGCAT	1 cut(s)	1195

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.