FvH4_2g13113

ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0015539
Physical Location & Seq
Reverse (-)
11504585 .. 11505439
855 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g13113.t1

Sequence Viewer

Length: 855 bp
ATGGTTCGATATTGGAGAGGCTCGATCGGGCCTTTTGTAATTGATGCGGCTTTTGGGTACTTCAATCGCCTTCAGGTATTCAATTTGGATTATGGCCCTTCTGATCATATTCCTATTTTCATTACTACAGAAGGAGAAGAATTGGTGAAAAGGCGAAAGAAGGCAAGAATGATGTTTGAGAATTTTTGGGCGAAAGAGGAAGATTGTAGGAGAATTATTGAAGAGATGTGGACAGGAGACTCTGAAACTTTGACGGATGTGAGTGCCAAATTGATGCAGTGTATGACCCGGTTATCTAAATGGAGTAAGGATGAAGTGGGAAATATTCCGAGACGGATTTTCAAGTTAAGAGAGGAGCTGAAGAGATTGCCTTTTGATAGCACCATTTCGGAAGTTCAACAAAAAAGAAAGAAAGTAAGTGCAGAACTAGAGAAGCTTGAACGACATGAGGAGGAATTATGGAGACAGAGGTCTCGAGTTATGTGGCTGAAGGAAGGCGATAACAATACGAAGTTTTTTCACAACTTTGCTAAAGCCAGAGGAAGTCGAAATTGGGTTGCAAAGCTTTTTGATGCGGAGGATAAATGGGTTCAGAATGGGGGGCACATTCATAATCTATTTGTGGATTACTTCTCCAATCTTTTCTCATCTGGAGGTTGTAATCACCAAGATCTTATTTTGGAGAAAGTAGGCAGAAGGGTGTCGAAGGAGATGAATAGGAAGTTACAGGTCCCGTTCAGACAACAAGATATCGAATTGGCTCTCAAGCAAATGGCGCCTTCGAAATCTCCAGGTTTTGATGGTTTGTCAGCTGCTTTTTTTAAAGAGTATTGGGATGTTGTGGGGGAGTGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_1 RVT_3 zf-RVT

Protein Analysis

285

Amino Acids

33.55

Weight (kDa)

9.04

Isoelectric Point (pI)

54.9

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 775
AciI CCGC 2 cut(s) 47, 575
AcsI RAATTY 1 cut(s) 181
AcuI CTGAAG 3 cut(s) 56, 380, 509
AcyI GRCGYC 1 cut(s) 776
AfaI GTAC 1 cut(s) 59
AgsI TTSAA 6 cut(s) 64, 82, 221, 343, 398, 440
AjnI CCWGG 1 cut(s) 790
AjuI GAANNNNNNNTTGG 2 cut(s) 535, 567
AluBI AGCT 4 cut(s) 358, 436, 565, 812
AluI AGCT 4 cut(s) 358, 436, 565, 812
Alw26I GTCTC 4 cut(s) 231, 325, 457, 477
Ama87I CYCGRG 1 cut(s) 474
AoxI GGCC 2 cut(s) 29, 94
ApeKI GCWGC 1 cut(s) 812
ApoI RAATTY 1 cut(s) 181
AspLEI GCGC 1 cut(s) 778
AspS9I GGNCC 3 cut(s) 29, 95, 730
AsuC2I CCSGG 1 cut(s) 289
AsuHPI GGTGA 2 cut(s) 157, 656
AsuII TTCGAA 1 cut(s) 782
AvaI CYCGRG 1 cut(s) 474
AvaII GGWCC 1 cut(s) 730
BaeGI GKGCMC 1 cut(s) 606
BanI GGYRCC 1 cut(s) 775
BbvI GCAGC 1 cut(s) 799
BccI CCATC 1 cut(s) 794
BciT130I CCWGG 1 cut(s) 792
BclI TGATCA 1 cut(s) 103
BcnI CCSGG 1 cut(s) 289
BcoDI GTCTC 4 cut(s) 231, 325, 457, 477
BfaI CTAG 1 cut(s) 428
BfmI CTRYAG 1 cut(s) 126
BfoI RGCGCY 1 cut(s) 779
BglII AGATCT 1 cut(s) 670
BisI GCNGC 2 cut(s) 48, 813
BlsI GCNGC 2 cut(s) 49, 814
Bme1390I CCNGG 2 cut(s) 289, 792
Bme18I GGWCC 1 cut(s) 730
BmeT110I CYCGRG 1 cut(s) 474
BmgT120I GGNCC 3 cut(s) 29, 95, 730
BmiI GGNNCC 2 cut(s) 732, 777
BmrFI CCNGG 2 cut(s) 289, 792
BmsI GCATC 3 cut(s) 34, 264, 562
BoxI GACNNNNGTC 1 cut(s) 469
BpmI CTGGAG 2 cut(s) 672, 774
Bpu14I TTCGAA 1 cut(s) 782
BpuEI CTTGAG 1 cut(s) 749
BpuMI CCSGG 1 cut(s) 289
BsaHI GRCGYC 1 cut(s) 776
BsaI GGTCTC 1 cut(s) 477
BseBI CCWGG 1 cut(s) 792
BseGI GGATG 3 cut(s) 262, 316, 841
BseRI GAGGAG 2 cut(s) 368, 464
BseSI GKGCMC 1 cut(s) 606
BseXI GCAGC 1 cut(s) 799
BsgI GTGCAG 1 cut(s) 441
Bsh1285I CGRYCG 1 cut(s) 27
BshFI GGCC 2 cut(s) 31, 96
BshNI GGYRCC 1 cut(s) 775
BsiEI CGRYCG 1 cut(s) 27
BsiHKCI CYCGRG 1 cut(s) 474
BsiSI CCGG 1 cut(s) 289
BslFI GGGAC 1 cut(s) 716
BsmAI GTCTC 4 cut(s) 231, 325, 457, 477
BsmBI CGTCTC 1 cut(s) 325
BsmFI GGGAC 1 cut(s) 716
BsnI GGCC 2 cut(s) 31, 96
Bso31I GGTCTC 1 cut(s) 477
BsoBI CYCGRG 1 cut(s) 474
Bsp119I TTCGAA 1 cut(s) 782
Bsp1286I GDGCHC 1 cut(s) 606
Bsp143I GATC 3 cut(s) 24, 103, 670
BspACI CCGC 2 cut(s) 47, 575
BspANI GGCC 2 cut(s) 31, 96
BspLI GGNNCC 2 cut(s) 732, 777
BspT104I TTCGAA 1 cut(s) 782
BspT107I GGYRCC 1 cut(s) 775
BspTNI GGTCTC 1 cut(s) 477
BssMI GATC 3 cut(s) 24, 103, 670
BssNI GRCGYC 1 cut(s) 776
Bst2UI CCWGG 1 cut(s) 792
Bst6I CTCTTC 2 cut(s) 216, 356
BstACI GRCGYC 1 cut(s) 776
BstBI TTCGAA 1 cut(s) 782
BstF5I GGATG 3 cut(s) 262, 316, 841
BstH2I RGCGCY 1 cut(s) 779
BstHHI GCGC 1 cut(s) 778
BstKTI GATC 3 cut(s) 27, 106, 673
BstMAI GTCTC 4 cut(s) 231, 325, 457, 477
BstMBI GATC 3 cut(s) 24, 103, 670
BstMCI CGRYCG 1 cut(s) 27
BstMWI GCNNNNNNNGC 1 cut(s) 775
BstNI CCWGG 1 cut(s) 792
BstPAI GACNNNNGTC 1 cut(s) 469
BstSCI CCNGG 2 cut(s) 287, 790
BstSFI CTRYAG 1 cut(s) 126
BstSLI GKGCMC 1 cut(s) 606
BstV1I GCAGC 1 cut(s) 799
BstX2I RGATCY 1 cut(s) 670
BstYI RGATCY 1 cut(s) 670
BsuRI GGCC 2 cut(s) 31, 96
BtsCI GGATG 3 cut(s) 262, 316, 841
BtsI GCAGTG 1 cut(s) 284
BtsIMutI CAGTG 1 cut(s) 284
CfoI GCGC 1 cut(s) 778
Cfr13I GGNCC 3 cut(s) 29, 95, 730
Csp6I GTAC 1 cut(s) 58
CviAII CATG 1 cut(s) 446
CviQI GTAC 1 cut(s) 58
DinI GGCGCC 1 cut(s) 777
DpnI GATC 3 cut(s) 26, 105, 672
DpnII GATC 3 cut(s) 24, 103, 670
DraI TTTAAA 1 cut(s) 823
Eam1104I CTCTTC 2 cut(s) 216, 356
EarI CTCTTC 2 cut(s) 216, 356
Eco31I GGTCTC 1 cut(s) 477
Eco32I GATATC 1 cut(s) 751
Eco47I GGWCC 1 cut(s) 730
Eco57I CTGAAG 3 cut(s) 56, 380, 509
Eco88I CYCGRG 1 cut(s) 474
EcoO109I RGGNCCY 1 cut(s) 730
EcoRII CCWGG 1 cut(s) 790
EcoRV GATATC 1 cut(s) 751
EgeI GGCGCC 1 cut(s) 777
EheI GGCGCC 1 cut(s) 777
Esp3I CGTCTC 1 cut(s) 325
FaeI CATG 1 cut(s) 449
FaiI YATR 7 cut(s) 93, 108, 284, 447, 460, 482, 612
FaqI GGGAC 1 cut(s) 716
FatI CATG 1 cut(s) 445
FbaI TGATCA 1 cut(s) 103
Fnu4HI GCNGC 2 cut(s) 48, 813
FokI GGATG 3 cut(s) 269, 323, 848
Fsp4HI GCNGC 2 cut(s) 48, 813
FspBI CTAG 1 cut(s) 428
GlaI GCGC 1 cut(s) 777
GluI GCNGC 2 cut(s) 48, 813
GsuI CTGGAG 2 cut(s) 672, 774
HaeII RGCGCY 1 cut(s) 779
HaeIII GGCC 2 cut(s) 31, 96
HapII CCGG 1 cut(s) 289
HhaI GCGC 1 cut(s) 778
Hin1I GRCGYC 1 cut(s) 776
Hin1II CATG 1 cut(s) 449
Hin6I GCGC 1 cut(s) 776
HinP1I GCGC 1 cut(s) 776
HindIII AAGCTT 2 cut(s) 434, 563
HinfI GANTC 1 cut(s) 239
HpaII CCGG 1 cut(s) 289
HphI GGTGA 2 cut(s) 157, 656
Hpy166II GTNNAC 1 cut(s) 231
Hpy188I TCNGA 6 cut(s) 103, 244, 330, 391, 594, 740
Hpy188III TCNNGA 2 cut(s) 474, 651
Hpy8I GTNNAC 1 cut(s) 231
HpyAV CCTTC 9 cut(s) 80, 108, 125, 154, 484, 488, 690, 700, 789
HpyCH4V TGCA 3 cut(s) 277, 422, 560
HpyF10VI GCNNNNNNNGC 1 cut(s) 775
Hsp92I GRCGYC 1 cut(s) 776
Hsp92II CATG 1 cut(s) 449
HspAI GCGC 1 cut(s) 776
KasI GGCGCC 1 cut(s) 775
Ksp22I TGATCA 1 cut(s) 103
Kzo9I GATC 3 cut(s) 24, 103, 670
LmnI GCTCC 1 cut(s) 355
LpnPI CCDG 8 cut(s) 59, 219, 302, 550, 636, 713, 777, 804
Lsp1109I GCAGC 1 cut(s) 799
LweI GCATC 3 cut(s) 34, 264, 562
MaeI CTAG 1 cut(s) 428
MaeIII GTNAC 1 cut(s) 723
MalI GATC 3 cut(s) 26, 105, 672
MboI GATC 3 cut(s) 24, 103, 670
MboII GAAGA 4 cut(s) 149, 212, 233, 373
MflI RGATCY 1 cut(s) 670
MhlI GDGCHC 1 cut(s) 606
MluCI AATT 9 cut(s) 39, 82, 140, 181, 213, 269, 455, 550, 755
Mly113I GGCGCC 1 cut(s) 776
MlyI GAGTC 1 cut(s) 233
MnlI CCTC 9 cut(s) 11, 190, 346, 442, 445, 462, 533, 571, 647
MseI TTAA 2 cut(s) 347, 822
MspA1I CMGCKG 1 cut(s) 812
MspI CCGG 1 cut(s) 289
MspR9I CCNGG 2 cut(s) 289, 792
MvaI CCWGG 1 cut(s) 792
MwoI GCNNNNNNNGC 1 cut(s) 775
NarI GGCGCC 1 cut(s) 776
NciI CCSGG 1 cut(s) 289
NdeII GATC 3 cut(s) 24, 103, 670
NlaIII CATG 1 cut(s) 449
NlaIV GGNNCC 2 cut(s) 732, 777
NspV TTCGAA 1 cut(s) 782
PaeR7I CTCGAG 1 cut(s) 474
PkrI GCNGC 2 cut(s) 49, 814
Ple19I CGATCG 1 cut(s) 27
PleI GAGTC 1 cut(s) 233
PluTI GGCGCC 1 cut(s) 779
PpsI GAGTC 1 cut(s) 233
PpuMI RGGWCCY 1 cut(s) 730
PshAI GACNNNNGTC 1 cut(s) 469
Psp5II RGGWCCY 1 cut(s) 730
Psp6I CCWGG 1 cut(s) 790
PspGI CCWGG 1 cut(s) 790
PspN4I GGNNCC 2 cut(s) 732, 777
PspPI GGNCC 3 cut(s) 29, 95, 730
PspPPI RGGWCCY 1 cut(s) 730
PsuI RGATCY 1 cut(s) 670
PvuI CGATCG 1 cut(s) 27
PvuII CAGCTG 1 cut(s) 812
RsaI GTAC 1 cut(s) 59
RsaNI GTAC 1 cut(s) 58
SaqAI TTAA 2 cut(s) 347, 822
SatI GCNGC 2 cut(s) 48, 813
Sau3AI GATC 3 cut(s) 24, 103, 670
Sau96I GGNCC 3 cut(s) 29, 95, 730
SchI GAGTC 1 cut(s) 233
ScrFI CCNGG 2 cut(s) 289, 792
SduI GDGCHC 1 cut(s) 606
SetI ASST 9 cut(s) 78, 360, 438, 473, 567, 658, 732, 796, 814
SfaNI GCATC 3 cut(s) 34, 264, 562
SfcI CTRYAG 1 cut(s) 126
SfoI GGCGCC 1 cut(s) 777
Sfr274I CTCGAG 1 cut(s) 474
SfuI TTCGAA 1 cut(s) 782
SinI GGWCC 1 cut(s) 730
SlaI CTCGAG 1 cut(s) 474
SmlI CTYRAG 2 cut(s) 474, 764
SmoI CTYRAG 2 cut(s) 474, 764
Sse9I AATT 9 cut(s) 39, 82, 140, 181, 213, 269, 455, 550, 755
SsiI CCGC 2 cut(s) 47, 575
SspDI GGCGCC 1 cut(s) 775
SspI AATATT 1 cut(s) 325
SspMI CTAG 1 cut(s) 428
StyD4I CCNGG 2 cut(s) 287, 790
TaqI TCGA 7 cut(s) 7, 23, 475, 547, 704, 753, 782
TasI AATT 9 cut(s) 39, 82, 140, 181, 213, 269, 455, 550, 755
TauI GCSGC 1 cut(s) 50
Tru1I TTAA 2 cut(s) 347, 822
Tru9I TTAA 2 cut(s) 347, 822
TscAI CASTG 1 cut(s) 284
TseI GCWGC 1 cut(s) 812
TspDTI ATGAA 4 cut(s) 109, 327, 599, 728
TspGWI ACGGA 2 cut(s) 269, 349
TspRI CASTG 1 cut(s) 284
VpaK11BI GGWCC 1 cut(s) 730
XapI RAATTY 1 cut(s) 181
XhoI CTCGAG 1 cut(s) 474
XspI CTAG 1 cut(s) 428
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.