Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1B

Orthogroup ID

OG0015539

Physical Location & Seq

Genomic Coordinates Forward (+)

6898057 .. 6898587

Gene Structure 531 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1BG050000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 531 bp

ATGGTTGGCTGCAACTGTGGCTGGTCCTTCCGTCCTTGTATCATATTTGGTGACTTCAACGAGTTGACTTGTATGTCTGAGAAGGGAGGAGGTGCTAGACCCGAAGCTCAAATGCGTAGATTTCGGGAGGTTATTAATGATTGCGGTCTACAGGATGTTGAGTTTTCTGGACCACCCACTACTTGGAAACATGGTGACACTCTCGAAAGGCTAGATAGATGCCTAGTGAACCAGAGGGCAGCAGATCTTTTTCCGAATTTGCATGAGCTTCATTTGGATGTTAGTGCTTCTGATCATCTAGCACTATTGATATATTCTAATAGGAGACACTTGGAACAGGAGAGTCAAACAAGATTTCACCGAAGATTCCAATTTGAGGCGTTTTGGACTAAGGAAGAACAGTGTGAGAAGATTATTTTGGAGCAGTGGTTGCAGTATTCTACACAGATAGGGGTTGTTACTAAGCTGCAGAGAGTTGCTCAAGCTCTGCAAAGTTGGAATAAGAATACGGTGGGTCACATTCCGAGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RVT_1 RVT_3 zf-RVT

Protein Analysis

176

Amino Acids

20.51

Weight (kDa)

6.65

Isoelectric Point (pI)

48.46

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015539)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g13113
prunus_persica	Prupe.1G178200_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0324001
rosa_multiflora	Rmu_sc0000526.1_g000014 Rmu_sc0002381.1_g000026 Rmu_sc0004684.1_g000006 Rmu_sc0011141.1_g000002
rosa_samantha	Rh1BG050000 Rh1DG065500 Rh2AG420500 Rh7DG114200 Rh7DG114400 Rh7DG149400
rosa_wichuraiana	Rw1G005070 Rw6G001310 Rw7G009650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	73
AccB7I	CCANNNNNTGG	1 cut(s)	183
AccI	GTMKAC	1 cut(s)	148
AciI	CCGC	1 cut(s)	144
AcsI	RAATTY	1 cut(s)	256
AfiI	CCNNNNNNNGG	2 cut(s)	183, 376
AgsI	TTSAA	1 cut(s)	58
AjuI	GAANNNNNNNTTGG	2 cut(s)	401, 433
AluBI	AGCT	4 cut(s)	107, 268, 466, 485
AluI	AGCT	4 cut(s)	107, 268, 466, 485
Alw26I	GTCTC	1 cut(s)	319
ApeKI	GCWGC	3 cut(s)	9, 239, 466
ApoI	RAATTY	1 cut(s)	256
AseI	ATTAAT	1 cut(s)	135
AspS9I	GGNCC	2 cut(s)	24, 170
AsuHPI	GGTGA	3 cut(s)	62, 206, 350
AvaII	GGWCC	2 cut(s)	24, 170
BbvI	GCAGC	2 cut(s)	251, 453
BclI	TGATCA	1 cut(s)	292
BcoDI	GTCTC	1 cut(s)	319
BfaI	CTAG	4 cut(s)	96, 212, 224, 299
BfmI	CTRYAG	2 cut(s)	149, 467
BglII	AGATCT	1 cut(s)	244
BisI	GCNGC	3 cut(s)	10, 240, 467
BlsI	GCNGC	3 cut(s)	11, 241, 468
Bme18I	GGWCC	2 cut(s)	24, 170
BmgT120I	GGNCC	2 cut(s)	24, 170
BmsI	GCATC	1 cut(s)	209
BplI	GAGNNNNNCTC	2 cut(s)	463, 495
BpuEI	CTTGAG	1 cut(s)	465
BsaXI	ACNNNNNCTCC	2 cut(s)	413, 443
Bsc4I	CCNNNNNNNGG	2 cut(s)	183, 376
BseGI	GGATG	2 cut(s)	160, 283
BseLI	CCNNNNNNNGG	2 cut(s)	183, 376
BseMII	CTCAG	1 cut(s)	69
BseRI	GAGGAG	1 cut(s)	102
BseXI	GCAGC	2 cut(s)	251, 453
BslI	CCNNNNNNNGG	2 cut(s)	183, 376
BsmAI	GTCTC	1 cut(s)	319
Bsp143I	GATC	2 cut(s)	244, 292
BspACI	CCGC	1 cut(s)	144
BspCNI	CTCAG	1 cut(s)	70
BspMAI	CTGCAG	1 cut(s)	471
BssMI	GATC	2 cut(s)	244, 292
Bst4CI	ACNGT	3 cut(s)	17, 402, 511
BstAPI	GCANNNNNTGC	1 cut(s)	430
BstDEI	CTNAG	3 cut(s)	78, 390, 462
BstF5I	GGATG	2 cut(s)	160, 283
BstKTI	GATC	2 cut(s)	247, 295
BstMAI	GTCTC	1 cut(s)	319
BstMBI	GATC	2 cut(s)	244, 292
BstMWI	GCNNNNNNNGC	2 cut(s)	18, 430
BstSFI	CTRYAG	2 cut(s)	149, 467
BstV1I	GCAGC	2 cut(s)	251, 453
BstX2I	RGATCY	1 cut(s)	244
BstYI	RGATCY	1 cut(s)	244
BtsCI	GGATG	2 cut(s)	160, 283
BtsI	GCAGTG	1 cut(s)	431
BtsIMutI	CAGTG	2 cut(s)	407, 431
Cfr13I	GGNCC	2 cut(s)	24, 170
CviAII	CATG	2 cut(s)	191, 263
CviJI	RGCY	7 cut(s)	9, 21, 107, 211, 268, 466, 485
CviKI_1	RGCY	7 cut(s)	9, 21, 107, 211, 268, 466, 485
DdeI	CTNAG	3 cut(s)	78, 390, 462
DpnI	GATC	2 cut(s)	246, 294
DpnII	GATC	2 cut(s)	244, 292
DrdI	GACNNNNNNGTC	1 cut(s)	73
DseDI	GACNNNNNNGTC	1 cut(s)	73
Eco47I	GGWCC	2 cut(s)	24, 170
FaeI	CATG	2 cut(s)	194, 266
FaiI	YATR	5 cut(s)	44, 74, 192, 264, 313
FatI	CATG	2 cut(s)	190, 262
FbaI	TGATCA	1 cut(s)	292
FblI	GTMKAC	1 cut(s)	148
Fnu4HI	GCNGC	3 cut(s)	10, 240, 467
FokI	GGATG	2 cut(s)	167, 290
Fsp4HI	GCNGC	3 cut(s)	10, 240, 467
FspBI	CTAG	4 cut(s)	96, 212, 224, 299
GluI	GCNGC	3 cut(s)	10, 240, 467
Hin1II	CATG	2 cut(s)	194, 266
HincII	GTYRAC	1 cut(s)	66
HindII	GTYRAC	1 cut(s)	66
HinfI	GANTC	2 cut(s)	343, 366
HphI	GGTGA	3 cut(s)	62, 206, 350
Hpy166II	GTNNAC	3 cut(s)	66, 149, 229
Hpy188I	TCNGA	4 cut(s)	79, 255, 292, 525
Hpy188III	TCNNGA	3 cut(s)	125, 168, 203
Hpy8I	GTNNAC	3 cut(s)	66, 149, 229
HpyAV	CCTTC	2 cut(s)	37, 76
HpyCH4III	ACNGT	3 cut(s)	17, 402, 511
HpyCH4V	TGCA	5 cut(s)	12, 262, 433, 469, 490
HpyF10VI	GCNNNNNNNGC	2 cut(s)	18, 430
HpyF3I	CTNAG	3 cut(s)	78, 390, 462
Hsp92II	CATG	2 cut(s)	194, 266
Ksp22I	TGATCA	1 cut(s)	292
Kzo9I	GATC	2 cut(s)	244, 292
LmnI	GCTCC	1 cut(s)	421
LpnPI	CCDG	5 cut(s)	7, 137, 153, 245, 323
Lsp1109I	GCAGC	2 cut(s)	251, 453
LweI	GCATC	1 cut(s)	209
MaeI	CTAG	4 cut(s)	96, 212, 224, 299
MaeIII	GTNAC	4 cut(s)	50, 194, 457, 515
MalI	GATC	2 cut(s)	246, 294
MboI	GATC	2 cut(s)	244, 292
MboII	GAAGA	3 cut(s)	375, 407, 421
MflI	RGATCY	1 cut(s)	244
MluCI	AATT	2 cut(s)	256, 371
MlyI	GAGTC	1 cut(s)	352
MmeI	TCCRAC	1 cut(s)	476
MnlI	CCTC	5 cut(s)	80, 83, 121, 228, 370
MseI	TTAA	1 cut(s)	135
MslI	CAYNNNNRTG	1 cut(s)	276
MwoI	GCNNNNNNNGC	2 cut(s)	18, 430
NdeII	GATC	2 cut(s)	244, 292
NlaIII	CATG	2 cut(s)	194, 266
NmuCI	GTSAC	3 cut(s)	50, 194, 515
PfeI	GAWTC	1 cut(s)	366
PflMI	CCANNNNNTGG	1 cut(s)	183
PkrI	GCNGC	3 cut(s)	11, 241, 468
PleI	GAGTC	1 cut(s)	351
PpsI	GAGTC	1 cut(s)	351
PshBI	ATTAAT	1 cut(s)	135
PspPI	GGNCC	2 cut(s)	24, 170
PstI	CTGCAG	1 cut(s)	471
PsuI	RGATCY	1 cut(s)	244
RseI	CAYNNNNRTG	1 cut(s)	276
SaqAI	TTAA	1 cut(s)	135
SatI	GCNGC	3 cut(s)	10, 240, 467
Sau3AI	GATC	2 cut(s)	244, 292
Sau96I	GGNCC	2 cut(s)	24, 170
SchI	GAGTC	1 cut(s)	352
SetI	ASST	6 cut(s)	94, 109, 132, 270, 468, 487
SfaNI	GCATC	1 cut(s)	209
SfcI	CTRYAG	2 cut(s)	149, 467
SinI	GGWCC	2 cut(s)	24, 170
SmiMI	CAYNNNNRTG	1 cut(s)	276
SmlI	CTYRAG	1 cut(s)	480
SmoI	CTYRAG	1 cut(s)	480
Sse9I	AATT	2 cut(s)	256, 371
SsiI	CCGC	1 cut(s)	144
SspMI	CTAG	4 cut(s)	96, 212, 224, 299
TaaI	ACNGT	3 cut(s)	17, 402, 511
TaqI	TCGA	1 cut(s)	204
TasI	AATT	2 cut(s)	256, 371
TfiI	GAWTC	1 cut(s)	366
Tru1I	TTAA	1 cut(s)	135
Tru9I	TTAA	1 cut(s)	135
TscAI	CASTG	2 cut(s)	407, 431
TseFI	GTSAC	3 cut(s)	50, 194, 515
TseI	GCWGC	3 cut(s)	9, 239, 466
Tsp45I	GTSAC	3 cut(s)	50, 194, 515
TspDTI	ATGAA	1 cut(s)	260
TspGWI	ACGGA	1 cut(s)	20
TspRI	CASTG	2 cut(s)	407, 431
Van91I	CCANNNNNTGG	1 cut(s)	183
VpaK11BI	GGWCC	2 cut(s)	24, 170
VspI	ATTAAT	1 cut(s)	135
XapI	RAATTY	1 cut(s)	256
XcmI	CCANNNNNNNNNTGG	1 cut(s)	180
XmiI	GTMKAC	1 cut(s)	148
XspI	CTAG	4 cut(s)	96, 212, 224, 299

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.