Rw6G001310

Ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr6
OG0015539
Physical Location & Seq
Forward (+)
1860847 .. 1861581
735 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw6G001310.1

Sequence Viewer

Length: 549 bp
ATGAGGAAGTTCAGAGAAGTTATTGATGATTGTGGCTTGCAGGAGGTAGAGTATTCTGGGCCTTTGTTCACATGGACTAATGGTGAAACAGTGGAGAGATTAAATCGCTGTTTGTTAAACGGTGATGCAGCTAATTTACTCCCACATATTTTTGAGGTTCATAAAGACGTGGGAGCTTCTGATCATTTACCGATAATTGTTCATATGGAAGGAAATCTTGCGCAGACACGAAGATGTGGTTTGAATGAAGAGCTCCAGAGGTACCCATTTGATAATCTAGAGTGTGAAGTGCAAAGAAAAAGAGAGAGTTTACTCTCAGAGTTTCAGAGATTGACAGCTTATGAAAAGGAGATGTGGAAGCAGAAGTACAGGGTGAATTGGTTGCAGCAAGGGGATAGAAACACAAGATTTTTCCATGGCTATGCAAAATATCGAGGACGGAGAAATAAGATTATGGGGGTTGCAGATATGGAAGGGGTGTGGCATGAGGAGGTTTTGGAGATTCAGAAGGCTTTCAGAGACTACCTTACTTCTCTTTTTACTTCGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Exo_endo_phos_2 RVT_1

Protein Analysis

182

Amino Acids

21.61

Weight (kDa)

6.32

Isoelectric Point (pI)

37.84

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 222
Acc65I GGTACC 1 cut(s) 261
AccB1I GGYRCC 1 cut(s) 261
AfaI GTAC 2 cut(s) 263, 368
AgsI TTSAA 1 cut(s) 244
AjiI CACGTC 1 cut(s) 169
AluBI AGCT 4 cut(s) 131, 176, 253, 338
AluI AGCT 4 cut(s) 131, 176, 253, 338
Alw21I GWGCWC 1 cut(s) 255
Alw26I GTCTC 1 cut(s) 513
AoxI GGCC 1 cut(s) 59
ApeKI GCWGC 2 cut(s) 128, 385
Asp700I GAANNNNTTC 1 cut(s) 512
Asp718I GGTACC 1 cut(s) 261
AspLEI GCGC 1 cut(s) 223
AspS9I GGNCC 1 cut(s) 59
AsuHPI GGTGA 3 cut(s) 95, 134, 385
BanI GGYRCC 1 cut(s) 261
BanII GRGCYC 1 cut(s) 255
BarI GAAGNNNNNNTAC 2 cut(s) 350, 382
Bbv12I GWGCWC 1 cut(s) 255
BbvI GCAGC 2 cut(s) 140, 397
BclI TGATCA 1 cut(s) 181
BcoDI GTCTC 1 cut(s) 513
BfaI CTAG 1 cut(s) 278
BisI GCNGC 2 cut(s) 129, 386
BlsI GCNGC 2 cut(s) 130, 387
BmgBI CACGTC 1 cut(s) 169
BmgT120I GGNCC 1 cut(s) 59
BmiI GGNNCC 1 cut(s) 263
BmsI GCATC 1 cut(s) 115
BpmI CTGGAG 1 cut(s) 239
BsaJI CCNNGG 1 cut(s) 415
BsaXI ACNNNNNCTCC 2 cut(s) 35, 65
BseDI CCNNGG 1 cut(s) 415
BseMII CTCAG 1 cut(s) 330
BseRI GAGGAG 1 cut(s) 503
BseXI GCAGC 2 cut(s) 140, 397
BshFI GGCC 1 cut(s) 61
BshNI GGYRCC 1 cut(s) 261
BsiHKAI GWGCWC 1 cut(s) 255
BsmAI GTCTC 1 cut(s) 513
BsnI GGCC 1 cut(s) 61
Bsp1286I GDGCHC 1 cut(s) 255
Bsp143I GATC 1 cut(s) 181
Bsp19I CCATGG 1 cut(s) 415
BspANI GGCC 1 cut(s) 61
BspCNI CTCAG 1 cut(s) 329
BspLI GGNNCC 1 cut(s) 263
BspQI GCTCTTC 1 cut(s) 243
BspT107I GGYRCC 1 cut(s) 261
BssECI CCNNGG 1 cut(s) 415
BssMI GATC 1 cut(s) 181
BssT1I CCWWGG 1 cut(s) 415
Bst4CI ACNGT 2 cut(s) 91, 122
Bst6I CTCTTC 1 cut(s) 243
BstC8I GCNNGC 1 cut(s) 38
BstDEI CTNAG 1 cut(s) 316
BstDSI CCRYGG 1 cut(s) 415
BstHHI GCGC 1 cut(s) 223
BstKTI GATC 1 cut(s) 184
BstMAI GTCTC 1 cut(s) 513
BstMBI GATC 1 cut(s) 181
BstV1I GCAGC 2 cut(s) 140, 397
BsuRI GGCC 1 cut(s) 61
BtgI CCRYGG 1 cut(s) 415
BtrI CACGTC 1 cut(s) 169
BtsIMutI CAGTG 1 cut(s) 96
Cac8I GCNNGC 1 cut(s) 38
CfoI GCGC 1 cut(s) 223
Cfr13I GGNCC 1 cut(s) 59
Csp6I GTAC 2 cut(s) 262, 367
CviAII CATG 3 cut(s) 72, 416, 485
CviJI RGCY 8 cut(s) 36, 61, 131, 176, 253, 338, 420, 512
CviKI_1 RGCY 8 cut(s) 36, 61, 131, 176, 253, 338, 420, 512
CviQI GTAC 2 cut(s) 262, 367
DdeI CTNAG 1 cut(s) 316
DpnI GATC 1 cut(s) 183
DpnII GATC 1 cut(s) 181
Eam1104I CTCTTC 1 cut(s) 243
EarI CTCTTC 1 cut(s) 243
Ecl136II GAGCTC 1 cut(s) 253
Eco130I CCWWGG 1 cut(s) 415
Eco24I GRGCYC 1 cut(s) 255
Eco53kI GAGCTC 1 cut(s) 253
EcoICRI GAGCTC 1 cut(s) 253
EcoT14I CCWWGG 1 cut(s) 415
EcoT38I GRGCYC 1 cut(s) 255
ErhI CCWWGG 1 cut(s) 415
FaeI CATG 3 cut(s) 75, 419, 488
FalI AAGNNNNNCTT 2 cut(s) 201, 233
FatI CATG 3 cut(s) 71, 415, 484
FauNDI CATATG 1 cut(s) 204
FbaI TGATCA 1 cut(s) 181
Fnu4HI GCNGC 2 cut(s) 129, 386
FriOI GRGCYC 1 cut(s) 255
Fsp4HI GCNGC 2 cut(s) 129, 386
FspBI CTAG 1 cut(s) 278
FspI TGCGCA 1 cut(s) 222
GlaI GCGC 1 cut(s) 222
GluI GCNGC 2 cut(s) 129, 386
GsuI CTGGAG 1 cut(s) 239
HaeIII GGCC 1 cut(s) 61
HhaI GCGC 1 cut(s) 223
Hin1II CATG 3 cut(s) 75, 419, 488
Hin6I GCGC 1 cut(s) 221
HinP1I GCGC 1 cut(s) 221
HinfI GANTC 1 cut(s) 502
HphI GGTGA 3 cut(s) 95, 134, 385
Hpy166II GTNNAC 2 cut(s) 69, 311
Hpy188I TCNGA 6 cut(s) 14, 181, 319, 327, 507, 518
Hpy188III TCNNGA 2 cut(s) 256, 278
Hpy8I GTNNAC 2 cut(s) 69, 311
HpyAV CCTTC 3 cut(s) 203, 467, 502
HpyCH4III ACNGT 2 cut(s) 91, 122
HpyCH4IV ACGT 1 cut(s) 168
HpyCH4V TGCA 6 cut(s) 40, 128, 292, 385, 425, 464
HpyF3I CTNAG 1 cut(s) 316
HpySE526I ACGT 1 cut(s) 168
Hsp92II CATG 3 cut(s) 75, 419, 488
HspAI GCGC 1 cut(s) 221
KpnI GGTACC 1 cut(s) 265
Ksp22I TGATCA 1 cut(s) 181
Kzo9I GATC 1 cut(s) 181
LguI GCTCTTC 1 cut(s) 243
LmnI GCTCC 2 cut(s) 173, 258
LpnPI CCDG 4 cut(s) 26, 42, 269, 355
Lsp1109I GCAGC 2 cut(s) 140, 397
LweI GCATC 1 cut(s) 115
MaeI CTAG 1 cut(s) 278
MaeII ACGT 1 cut(s) 168
MalI GATC 1 cut(s) 183
MboI GATC 1 cut(s) 181
MboII GAAGA 2 cut(s) 243, 260
MhlI GDGCHC 1 cut(s) 255
MluCI AATT 3 cut(s) 133, 195, 376
MnlI CCTC 6 cut(s) 37, 148, 252, 428, 481, 484
MroXI GAANNNNTTC 1 cut(s) 512
MseI TTAA 2 cut(s) 101, 116
MslI CAYNNNNRTG 2 cut(s) 232, 420
NcoI CCATGG 1 cut(s) 415
NdeI CATATG 1 cut(s) 204
NdeII GATC 1 cut(s) 181
NlaIII CATG 3 cut(s) 75, 419, 488
NlaIV GGNNCC 1 cut(s) 263
NsbI TGCGCA 1 cut(s) 222
PciSI GCTCTTC 1 cut(s) 243
PdmI GAANNNNTTC 1 cut(s) 512
PfeI GAWTC 1 cut(s) 502
PkrI GCNGC 2 cut(s) 130, 387
Psp124BI GAGCTC 1 cut(s) 255
PspN4I GGNNCC 1 cut(s) 263
PspPI GGNCC 1 cut(s) 59
RsaI GTAC 2 cut(s) 263, 368
RsaNI GTAC 2 cut(s) 262, 367
RseI CAYNNNNRTG 2 cut(s) 232, 420
SacI GAGCTC 1 cut(s) 255
SapI GCTCTTC 1 cut(s) 243
SaqAI TTAA 2 cut(s) 101, 116
SatI GCNGC 2 cut(s) 129, 386
Sau3AI GATC 1 cut(s) 181
Sau96I GGNCC 1 cut(s) 59
SduI GDGCHC 1 cut(s) 255
SfaNI GCATC 1 cut(s) 115
SmiMI CAYNNNNRTG 2 cut(s) 232, 420
Sse9I AATT 3 cut(s) 133, 195, 376
SspMI CTAG 1 cut(s) 278
SstI GAGCTC 1 cut(s) 255
StyI CCWWGG 1 cut(s) 415
TaaI ACNGT 2 cut(s) 91, 122
TaiI ACGT 1 cut(s) 171
TaqI TCGA 1 cut(s) 433
TasI AATT 3 cut(s) 133, 195, 376
TatI WGTACW 1 cut(s) 366
TfiI GAWTC 1 cut(s) 502
Tru1I TTAA 2 cut(s) 101, 116
Tru9I TTAA 2 cut(s) 101, 116
TscAI CASTG 1 cut(s) 96
TseI GCWGC 2 cut(s) 128, 385
TspDTI ATGAA 4 cut(s) 149, 191, 261, 357
TspGWI ACGGA 1 cut(s) 454
TspRI CASTG 1 cut(s) 96
XbaI TCTAGA 1 cut(s) 277
XmnI GAANNNNTTC 1 cut(s) 512
XspI CTAG 1 cut(s) 278
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.