Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0015539

Physical Location & Seq

Genomic Coordinates Forward (+)

11548558 .. 11551931

Gene Structure 3374 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG065500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 855 bp

ATGTCTGAGAAGGGAGGAGGTGCTAGACCCGAAGCTCAGATGCGTAGATTTCGGGAGGTTATTAATGATTGCGGTCTACAGGATGTTGAGTTTTCTGGACCACCCACTACTTGGAAACATGGTGACACTCTCGAAAGGCTAGATAGATGCCTAGTGAACCAGAGGGCAGCAGATCTTTTTCCGAATTTGCATGAGCTTCATTTGGATGTTAGTGCTTCTGATCATCTAGCACTATTGATATATTCTAATAGGAGACACTTGGAACAGGAGAGTCAAACAAGATTTCACCGAAGATTCCAATTTGAGGCGTTTTGGACTAAGGGAGAACAGTGTGAGAAGATTATTTTGGAGCAGTGGTTGCAGGATTCTACACAGATAGGGGTTGTTACTAAGCTGCAGAGAGTTGCTCAAGCTCTGCAAAGTTGGAATAAGAATACGGTGGGTCACATTCCGAGAAAGATTAAGATGTTGAATGCCAAGCTTCAACAGTACCCGTTTGATAATTTGGAGGAGGGAGTACAGGAGACGTGTGCAGCTGCAGATTTGATTCATAGAGTATCTGAATGGCTGGACGACTATGCCAGTGCTCAGGAGCAAAGAAGAGTGCAGGGTACTAAGAGGCCGGATACTACCAATGAGGATCAGCAGGTTCACAGTTGGATGCGTTTGGATCCTATGTTTTTTAAACTAAATTTTGATGGGGCAAGTGACTTGAAGAAGGGCAGGTCTGGGTTGGGTGCGGTAGCAAGAGAAGAAGCAGGGAGGTTATCTGGTGCATTAGCTATCCCAGATTCCCAGTGCATGGGCAGTTATCAGAGCTTAGGGATTAGATTCCTAAGATATGTCGGAGCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RVT_1 RVT_3 zf-RVT

Protein Analysis

284

Amino Acids

32.48

Weight (kDa)

6.76

Isoelectric Point (pI)

47.33

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015539)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g13113
prunus_persica	Prupe.1G178200_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0324001
rosa_multiflora	Rmu_sc0000526.1_g000014 Rmu_sc0002381.1_g000026 Rmu_sc0004684.1_g000006 Rmu_sc0011141.1_g000002
rosa_samantha	Rh1BG050000 Rh1DG065500 Rh2AG420500 Rh7DG114200 Rh7DG114400 Rh7DG149400
rosa_wichuraiana	Rw1G005070 Rw6G001310 Rw7G009650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	637, 714
AccB7I	CCANNNNNTGG	2 cut(s)	111, 802
AccI	GTMKAC	1 cut(s)	76
AciI	CCGC	2 cut(s)	72, 740
AclWI	GGATC	3 cut(s)	648, 665, 678
AcsI	RAATTY	2 cut(s)	184, 691
AfaI	GTAC	3 cut(s)	491, 519, 613
AfiI	CCNNNNNNNGG	3 cut(s)	111, 304, 802
AflIII	ACRYGT	1 cut(s)	527
AgsI	TTSAA	3 cut(s)	472, 485, 715
AjiI	CACGTC	1 cut(s)	528
AjuI	GAANNNNNNNTTGG	2 cut(s)	329, 361
AluBI	AGCT	8 cut(s)	35, 196, 394, 413, 481, 536, 782, 819
AluI	AGCT	8 cut(s)	35, 196, 394, 413, 481, 536, 782, 819
Alw21I	GWGCWC	1 cut(s)	589
Alw26I	GTCTC	2 cut(s)	247, 518
AlwI	GGATC	3 cut(s)	648, 665, 678
AoxI	GGCC	1 cut(s)	620
ApeKI	GCWGC	4 cut(s)	167, 394, 533, 536
ApoI	RAATTY	2 cut(s)	184, 691
AseI	ATTAAT	1 cut(s)	63
AspS9I	GGNCC	1 cut(s)	98
AsuHPI	GGTGA	2 cut(s)	134, 278
AvaII	GGWCC	1 cut(s)	98
BamHI	GGATCC	1 cut(s)	670
Bbv12I	GWGCWC	1 cut(s)	589
BbvI	GCAGC	4 cut(s)	179, 381, 523, 545
BccI	CCATC	1 cut(s)	692
BciVI	GTATCC	1 cut(s)	619
BclI	TGATCA	1 cut(s)	220
BcoDI	GTCTC	2 cut(s)	247, 518
BfaI	CTAG	4 cut(s)	24, 140, 152, 227
BfmI	CTRYAG	3 cut(s)	77, 395, 537
BfuAI	ACCTGC	2 cut(s)	637, 714
BfuI	GTATCC	1 cut(s)	619
BglII	AGATCT	1 cut(s)	172
BisI	GCNGC	4 cut(s)	168, 395, 534, 537
BlsI	GCNGC	4 cut(s)	169, 396, 535, 538
Bme18I	GGWCC	1 cut(s)	98
BmgBI	CACGTC	1 cut(s)	528
BmgT120I	GGNCC	1 cut(s)	98
BmiI	GGNNCC	1 cut(s)	672
BmrI	ACTGGG	1 cut(s)	790
BmsI	GCATC	3 cut(s)	30, 137, 651
BmuI	ACTGGG	1 cut(s)	790
BplI	GAGNNNNNCTC	2 cut(s)	391, 423
Bpu10I	CCTNAGC	2 cut(s)	588, 820
BpuEI	CTTGAG	1 cut(s)	393
BsaXI	ACNNNNNCTCC	2 cut(s)	341, 371
Bsc4I	CCNNNNNNNGG	3 cut(s)	111, 304, 802
Bse1I	ACTGG	2 cut(s)	582, 796
BseGI	GGATG	3 cut(s)	88, 211, 666
BseLI	CCNNNNNNNGG	3 cut(s)	111, 304, 802
BseMII	CTCAG	2 cut(s)	50, 602
BseNI	ACTGG	2 cut(s)	582, 796
BseRI	GAGGAG	2 cut(s)	30, 524
BseXI	GCAGC	4 cut(s)	179, 381, 523, 545
BsgI	GTGCAG	2 cut(s)	552, 626
BshFI	GGCC	1 cut(s)	622
BsiHKAI	GWGCWC	1 cut(s)	589
BsiSI	CCGG	1 cut(s)	623
BslI	CCNNNNNNNGG	3 cut(s)	111, 304, 802
BsmAI	GTCTC	2 cut(s)	247, 518
BsmBI	CGTCTC	1 cut(s)	518
BsmI	GAATGC	1 cut(s)	478
BsnI	GGCC	1 cut(s)	622
Bsp1286I	GDGCHC	1 cut(s)	589
Bsp143I	GATC	4 cut(s)	172, 220, 640, 670
BspACI	CCGC	2 cut(s)	72, 740
BspANI	GGCC	1 cut(s)	622
BspCNI	CTCAG	2 cut(s)	49, 601
BspLI	GGNNCC	1 cut(s)	672
BspMAI	CTGCAG	2 cut(s)	399, 541
BspMI	ACCTGC	2 cut(s)	637, 714
BspPI	GGATC	3 cut(s)	648, 665, 678
BsrI	ACTGG	2 cut(s)	582, 796
BssMI	GATC	4 cut(s)	172, 220, 640, 670
Bst4CI	ACNGT	4 cut(s)	330, 439, 489, 656
Bst6I	CTCTTC	1 cut(s)	595
BstAPI	GCANNNNNTGC	1 cut(s)	358
BstDEI	CTNAG	8 cut(s)	6, 36, 318, 390, 588, 615, 820, 836
BstF5I	GGATG	3 cut(s)	88, 211, 666
BstKTI	GATC	4 cut(s)	175, 223, 643, 673
BstMAI	GTCTC	2 cut(s)	247, 518
BstMBI	GATC	4 cut(s)	172, 220, 640, 670
BstMWI	GCNNNNNNNGC	1 cut(s)	358
BstSFI	CTRYAG	3 cut(s)	77, 395, 537
BstV1I	GCAGC	4 cut(s)	179, 381, 523, 545
BstX2I	RGATCY	2 cut(s)	172, 670
BstYI	RGATCY	2 cut(s)	172, 670
BsuI	GTATCC	1 cut(s)	619
BsuRI	GGCC	1 cut(s)	622
BtrI	CACGTC	1 cut(s)	528
BtsCI	GGATG	3 cut(s)	88, 211, 666
BtsI	GCAGTG	1 cut(s)	359
BtsIMutI	CAGTG	4 cut(s)	335, 359, 589, 803
BveI	ACCTGC	2 cut(s)	637, 714
Cfr13I	GGNCC	1 cut(s)	98
Csp6I	GTAC	3 cut(s)	490, 518, 612
CviAII	CATG	3 cut(s)	119, 191, 802
CviQI	GTAC	3 cut(s)	490, 518, 612
DdeI	CTNAG	8 cut(s)	6, 36, 318, 390, 588, 615, 820, 836
DpnI	GATC	4 cut(s)	174, 222, 642, 672
DpnII	GATC	4 cut(s)	172, 220, 640, 670
DraI	TTTAAA	1 cut(s)	685
Eam1104I	CTCTTC	1 cut(s)	595
EarI	CTCTTC	1 cut(s)	595
Eco47I	GGWCC	1 cut(s)	98
Esp3I	CGTCTC	1 cut(s)	518
FaeI	CATG	3 cut(s)	122, 194, 805
FaiI	YATR	9 cut(s)	120, 192, 241, 552, 579, 677, 803, 843, 853
FatI	CATG	3 cut(s)	118, 190, 801
FbaI	TGATCA	1 cut(s)	220
FblI	GTMKAC	1 cut(s)	76
Fnu4HI	GCNGC	4 cut(s)	168, 395, 534, 537
FokI	GGATG	3 cut(s)	95, 218, 673
Fsp4HI	GCNGC	4 cut(s)	168, 395, 534, 537
FspBI	CTAG	4 cut(s)	24, 140, 152, 227
GluI	GCNGC	4 cut(s)	168, 395, 534, 537
HaeIII	GGCC	1 cut(s)	622
HapII	CCGG	1 cut(s)	623
Hin1II	CATG	3 cut(s)	122, 194, 805
HindIII	AAGCTT	1 cut(s)	479
HinfI	GANTC	6 cut(s)	271, 294, 365, 547, 791, 831
HpaII	CCGG	1 cut(s)	623
HphI	GGTGA	2 cut(s)	134, 278
Hpy166II	GTNNAC	3 cut(s)	77, 157, 652
Hpy188I	TCNGA	8 cut(s)	7, 39, 183, 220, 453, 562, 816, 848
Hpy188III	TCNNGA	4 cut(s)	53, 96, 131, 590
Hpy8I	GTNNAC	3 cut(s)	77, 157, 652
HpyAV	CCTTC	2 cut(s)	4, 712
HpyCH4III	ACNGT	4 cut(s)	330, 439, 489, 656
HpyCH4IV	ACGT	1 cut(s)	527
HpyCH4V	TGCA	9 cut(s)	190, 361, 397, 418, 533, 539, 607, 776, 801
HpyF10VI	GCNNNNNNNGC	1 cut(s)	358
HpyF3I	CTNAG	8 cut(s)	6, 36, 318, 390, 588, 615, 820, 836
HpySE526I	ACGT	1 cut(s)	527
Hsp92II	CATG	3 cut(s)	122, 194, 805
Ksp22I	TGATCA	1 cut(s)	220
Kzo9I	GATC	4 cut(s)	172, 220, 640, 670
LmnI	GCTCC	3 cut(s)	349, 592, 848
Lsp1109I	GCAGC	4 cut(s)	179, 381, 523, 545
LweI	GCATC	3 cut(s)	30, 137, 651
MaeI	CTAG	4 cut(s)	24, 140, 152, 227
MaeII	ACGT	1 cut(s)	527
MaeIII	GTNAC	4 cut(s)	122, 385, 443, 707
MalI	GATC	4 cut(s)	174, 222, 642, 672
MboI	GATC	4 cut(s)	172, 220, 640, 670
MboII	GAAGA	5 cut(s)	303, 349, 612, 727, 764
MflI	RGATCY	2 cut(s)	172, 670
MhlI	GDGCHC	1 cut(s)	589
MluCI	AATT	4 cut(s)	184, 299, 502, 691
MlyI	GAGTC	1 cut(s)	280
MmeI	TCCRAC	3 cut(s)	404, 638, 826
MseI	TTAA	3 cut(s)	63, 462, 684
MslI	CAYNNNNRTG	1 cut(s)	204
MspA1I	CMGCKG	1 cut(s)	536
MspI	CCGG	1 cut(s)	623
Mva1269I	GAATGC	1 cut(s)	478
MwoI	GCNNNNNNNGC	1 cut(s)	358
NdeII	GATC	4 cut(s)	172, 220, 640, 670
NlaIII	CATG	3 cut(s)	122, 194, 805
NlaIV	GGNNCC	1 cut(s)	672
NmuCI	GTSAC	3 cut(s)	122, 443, 707
PctI	GAATGC	1 cut(s)	478
PfeI	GAWTC	5 cut(s)	294, 365, 547, 791, 831
PflMI	CCANNNNNTGG	2 cut(s)	111, 802
PkrI	GCNGC	4 cut(s)	169, 396, 535, 538
PleI	GAGTC	1 cut(s)	279
PpsI	GAGTC	1 cut(s)	279
PshBI	ATTAAT	1 cut(s)	63
PspN4I	GGNNCC	1 cut(s)	672
PspPI	GGNCC	1 cut(s)	98
PstI	CTGCAG	2 cut(s)	399, 541
PsuI	RGATCY	2 cut(s)	172, 670
PvuII	CAGCTG	1 cut(s)	536
RsaI	GTAC	3 cut(s)	491, 519, 613
RsaNI	GTAC	3 cut(s)	490, 518, 612
RseI	CAYNNNNRTG	1 cut(s)	204
SaqAI	TTAA	3 cut(s)	63, 462, 684
SatI	GCNGC	4 cut(s)	168, 395, 534, 537
Sau3AI	GATC	4 cut(s)	172, 220, 640, 670
Sau96I	GGNCC	1 cut(s)	98
SchI	GAGTC	1 cut(s)	280
SduI	GDGCHC	1 cut(s)	589
SfaNI	GCATC	3 cut(s)	30, 137, 651
SfcI	CTRYAG	3 cut(s)	77, 395, 537
SinI	GGWCC	1 cut(s)	98
SmiMI	CAYNNNNRTG	1 cut(s)	204
SmlI	CTYRAG	1 cut(s)	408
SmoI	CTYRAG	1 cut(s)	408
Sse9I	AATT	4 cut(s)	184, 299, 502, 691
SsiI	CCGC	2 cut(s)	72, 740
SspMI	CTAG	4 cut(s)	24, 140, 152, 227
TaaI	ACNGT	4 cut(s)	330, 439, 489, 656
TaiI	ACGT	1 cut(s)	530
TaqI	TCGA	1 cut(s)	132
TasI	AATT	4 cut(s)	184, 299, 502, 691
TatI	WGTACW	1 cut(s)	517
TfiI	GAWTC	5 cut(s)	294, 365, 547, 791, 831
Tru1I	TTAA	3 cut(s)	63, 462, 684
Tru9I	TTAA	3 cut(s)	63, 462, 684
TscAI	CASTG	4 cut(s)	335, 359, 589, 803
TseFI	GTSAC	3 cut(s)	122, 443, 707
TseI	GCWGC	4 cut(s)	167, 394, 533, 536
Tsp45I	GTSAC	3 cut(s)	122, 443, 707
TspDTI	ATGAA	2 cut(s)	188, 539
TspRI	CASTG	4 cut(s)	335, 359, 589, 803
Van91I	CCANNNNNTGG	2 cut(s)	111, 802
VpaK11BI	GGWCC	1 cut(s)	98
VspI	ATTAAT	1 cut(s)	63
XapI	RAATTY	2 cut(s)	184, 691
XcmI	CCANNNNNNNNNTGG	1 cut(s)	108
XmiI	GTMKAC	1 cut(s)	76
XspI	CTAG	4 cut(s)	24, 140, 152, 227

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.