Rh7DG149400

ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0015539
Physical Location & Seq
Forward (+)
12882795 .. 12883208
414 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG149400.1

Sequence Viewer

Length: 414 bp
ATGAAGACAACTGTTAGTGAGTTACGTAAATATTTGGAGTTTGAGGAAGAAGCCTGGAAACAAAAGTCAAGAGTGGCCTGGTTACAAGAGGGAGACCAAAATACTAAATTCTTTCATGGGTATGCCAAAAGTAGAGGGAGAAGAAACAAGGTTACAGGAATTATAGATTTGAATGGGGACTGGAAAGATAATGATGTGGATATTCAATTGGCTTTCTCGGCATATTTTCAGCATTTGTTTACTACAGAGGGGTACAGGTACATGGATTTGGGTCTAGACTCTAGAAGCTATTCCGCCGAAGATAACCAACGAGATGAATGCGAAGTTGGCAAGGCCTTTCATGAGGAGGCTTTGAAGCAAATGGCACCAGACAAGTCACCACGTGAAGATGGGTTCCCTGCCAGATTTTACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_1 RVT_3 zf-RVT

Protein Analysis

137

Amino Acids

16.12

Weight (kDa)

5.44

Isoelectric Point (pI)

52.9

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 364
AciI CCGC 1 cut(s) 294
AcsI RAATTY 1 cut(s) 107
AcvI CACGTG 1 cut(s) 383
AdeI CACNNNGTG 1 cut(s) 383
AfaI GTAC 2 cut(s) 254, 260
AgsI TTSAA 3 cut(s) 172, 206, 355
AjnI CCWGG 2 cut(s) 53, 77
AjuI GAANNNNNNNTTGG 2 cut(s) 309, 341
AluBI AGCT 1 cut(s) 288
AluI AGCT 1 cut(s) 288
Alw26I GTCTC 1 cut(s) 87
AoxI GGCC 2 cut(s) 75, 333
ApoI RAATTY 1 cut(s) 107
Asp700I GAANNNNTTC 1 cut(s) 289
AsuHPI GGTGA 1 cut(s) 369
BanI GGYRCC 1 cut(s) 364
BbrPI CACGTG 1 cut(s) 383
BbsI GAAGAC 1 cut(s) 11
BccI CCATC 1 cut(s) 383
BcgI CGANNNNNNTGC 2 cut(s) 300, 334
BciT130I CCWGG 2 cut(s) 55, 79
BcoDI GTCTC 1 cut(s) 87
BfaI CTAG 3 cut(s) 275, 282, 412
BfmI CTRYAG 1 cut(s) 243
Bme1390I CCNGG 2 cut(s) 55, 79
BmiI GGNNCC 2 cut(s) 366, 395
BmrFI CCNGG 2 cut(s) 55, 79
BpiI GAAGAC 1 cut(s) 11
BsaAI YACGTR 2 cut(s) 26, 383
BsaI GGTCTC 1 cut(s) 87
Bse1I ACTGG 1 cut(s) 185
BseBI CCWGG 2 cut(s) 55, 79
BseNI ACTGG 1 cut(s) 185
BseRI GAGGAG 1 cut(s) 359
BshFI GGCC 2 cut(s) 77, 335
BshNI GGYRCC 1 cut(s) 364
BslFI GGGAC 1 cut(s) 191
BsmAI GTCTC 1 cut(s) 87
BsmFI GGGAC 1 cut(s) 191
BsmI GAATGC 1 cut(s) 323
BsnI GGCC 2 cut(s) 77, 335
Bso31I GGTCTC 1 cut(s) 87
BspACI CCGC 1 cut(s) 294
BspANI GGCC 2 cut(s) 77, 335
BspHI TCATGA 1 cut(s) 340
BspLI GGNNCC 2 cut(s) 366, 395
BspT107I GGYRCC 1 cut(s) 364
BspTNI GGTCTC 1 cut(s) 87
BsrI ACTGG 1 cut(s) 185
Bst2UI CCWGG 2 cut(s) 55, 79
Bst4CI ACNGT 1 cut(s) 13
BstBAI YACGTR 2 cut(s) 26, 383
BstMAI GTCTC 1 cut(s) 87
BstMWI GCNNNNNNNGC 2 cut(s) 218, 327
BstNI CCWGG 2 cut(s) 55, 79
BstSCI CCNGG 2 cut(s) 53, 77
BstSFI CTRYAG 1 cut(s) 243
BstSNI TACGTA 1 cut(s) 26
BstV2I GAAGAC 1 cut(s) 11
BsuRI GGCC 2 cut(s) 77, 335
CciI TCATGA 1 cut(s) 340
Csp6I GTAC 2 cut(s) 253, 259
CviAII CATG 3 cut(s) 116, 262, 341
CviJI RGCY 6 cut(s) 53, 77, 212, 288, 335, 350
CviKI_1 RGCY 6 cut(s) 53, 77, 212, 288, 335, 350
CviQI GTAC 2 cut(s) 253, 259
DraIII CACNNNGTG 1 cut(s) 383
EciI GGCGGA 1 cut(s) 283
Eco105I TACGTA 1 cut(s) 26
Eco147I AGGCCT 1 cut(s) 335
Eco31I GGTCTC 1 cut(s) 87
Eco72I CACGTG 1 cut(s) 383
EcoRII CCWGG 2 cut(s) 53, 77
FaeI CATG 3 cut(s) 119, 265, 344
FaiI YATR 6 cut(s) 117, 123, 164, 223, 263, 342
FaqI GGGAC 1 cut(s) 191
FatI CATG 3 cut(s) 115, 261, 340
FspBI CTAG 3 cut(s) 275, 282, 412
HaeIII GGCC 2 cut(s) 77, 335
Hin1II CATG 3 cut(s) 119, 265, 344
HinfI GANTC 1 cut(s) 278
HphI GGTGA 1 cut(s) 369
Hpy166II GTNNAC 1 cut(s) 240
Hpy188III TCNNGA 4 cut(s) 69, 275, 282, 341
Hpy8I GTNNAC 1 cut(s) 240
HpyCH4III ACNGT 1 cut(s) 13
HpyCH4IV ACGT 2 cut(s) 25, 382
HpyF10VI GCNNNNNNNGC 2 cut(s) 218, 327
HpySE526I ACGT 2 cut(s) 25, 382
Hsp92II CATG 3 cut(s) 119, 265, 344
LpnPI CCDG 8 cut(s) 40, 64, 67, 91, 141, 166, 241, 381
MaeI CTAG 3 cut(s) 275, 282, 412
MaeII ACGT 2 cut(s) 25, 382
MaeIII GTNAC 4 cut(s) 21, 81, 151, 375
MboII GAAGA 5 cut(s) 16, 59, 153, 311, 398
MfeI CAATTG 1 cut(s) 206
MluCI AATT 3 cut(s) 107, 159, 206
MlyI GAGTC 1 cut(s) 272
MnlI CCTC 6 cut(s) 37, 82, 128, 241, 337, 340
MroXI GAANNNNTTC 1 cut(s) 289
MslI CAYNNNNRTG 1 cut(s) 120
MspR9I CCNGG 2 cut(s) 55, 79
MunI CAATTG 1 cut(s) 206
Mva1269I GAATGC 1 cut(s) 323
MvaI CCWGG 2 cut(s) 55, 79
MwoI GCNNNNNNNGC 2 cut(s) 218, 327
NlaIII CATG 3 cut(s) 119, 265, 344
NlaIV GGNNCC 2 cut(s) 366, 395
NmeAIII GCCGAG 1 cut(s) 197
NmuCI GTSAC 1 cut(s) 375
PagI TCATGA 1 cut(s) 340
PceI AGGCCT 1 cut(s) 335
PctI GAATGC 1 cut(s) 323
PdmI GAANNNNTTC 1 cut(s) 289
PleI GAGTC 1 cut(s) 272
PmaCI CACGTG 1 cut(s) 383
PmlI CACGTG 1 cut(s) 383
PpsI GAGTC 1 cut(s) 272
Ppu21I YACGTR 2 cut(s) 26, 383
Psp6I CCWGG 2 cut(s) 53, 77
PspCI CACGTG 1 cut(s) 383
PspGI CCWGG 2 cut(s) 53, 77
PspN4I GGNNCC 2 cut(s) 366, 395
RsaI GTAC 2 cut(s) 254, 260
RsaNI GTAC 2 cut(s) 253, 259
RseI CAYNNNNRTG 1 cut(s) 120
SchI GAGTC 1 cut(s) 272
ScrFI CCNGG 2 cut(s) 55, 79
SetI ASST 5 cut(s) 28, 153, 260, 290, 385
SfcI CTRYAG 1 cut(s) 243
SmiMI CAYNNNNRTG 1 cut(s) 120
SnaBI TACGTA 1 cut(s) 26
Sse9I AATT 3 cut(s) 107, 159, 206
SseBI AGGCCT 1 cut(s) 335
SsiI CCGC 1 cut(s) 294
SspI AATATT 1 cut(s) 32
SspMI CTAG 3 cut(s) 275, 282, 412
StuI AGGCCT 1 cut(s) 335
StyD4I CCNGG 2 cut(s) 53, 77
TaaI ACNGT 1 cut(s) 13
TaiI ACGT 2 cut(s) 28, 385
TasI AATT 3 cut(s) 107, 159, 206
TseFI GTSAC 1 cut(s) 375
Tsp45I GTSAC 1 cut(s) 375
TspDTI ATGAA 4 cut(s) 17, 104, 329, 330
XapI RAATTY 1 cut(s) 107
XbaI TCTAGA 2 cut(s) 274, 281
XmnI GAANNNNTTC 1 cut(s) 289
XspI CTAG 3 cut(s) 275, 282, 412
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.