Rh7DG114400

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0015539
Physical Location & Seq
Reverse (-)
9714968 .. 9715813
846 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG114400.1

Sequence Viewer

Length: 846 bp
ATGGAGGAGATGGATGTTGATACTGAGGATCGAAACTTGACGGAGGTCCCTCCGACCAAGCGCCGGCGTCGACTGAGGGATGACGTGGCACCTCATTTATCCCTGCATTCATGTCCAAAGGAATCACAGGATGATATGTTGGCTGTGAATTCGGGATTGATTGAGCGAGATGTCAGGAAGCAATCTGTAGAAGATCATGATTTAATTGAGGGAGGCTCCACATTAGGCAGGAAAGAAGCTGGTTTGCTTGGTAATGGGGCACGTGGGGTACAAGTGCCCACTTCAAAAGGTGGGCTACAGAGTGGGCTACAGAACCATGGTTCTAATTTGGCCCAATCCCACCCACTCACACCGACTACAGCTCCAGATTCTAATCTCGAGATTGTATCTGCTGGGGGTTGTTTCTCAACCTCTCATTCTGATTCAAAATCTGTGAATCAAAAGTCAAAACAGAAGAAAGGGATTTTTGAATTTGGGGAAGGCAAATCTGTAGGGGTGGAAGGGGATGATGTTAGAGTTTACAAAAGGGGAGGTGGAAGAGGTCGGCGAAGTGATGGCAGAGAGGGTTTTGGGGGAGGAGGGGGGAGTACTAAGGACAAGGAGAAAGGGAAGGAAGTTGTCTCTGAAGGTGTGGAGAATGATGGGAAGCTAAAGAGGATGAAAGATACGGCAGCATTGGGAGGTCGAGGTAGAGGTGGAAAGGGGCGCTATGGCTTTCCAGTCAGCGGTCAGGGGCGTGGGCACTCCTCCAACCGAGTTCCCCCACGAAAATCCAATCTTGCTGATGTCTCAGGTAACTGTTTAACCGTGATGGGCTCCGGTTCTTGGGCCCATCATGAGCAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

281

Amino Acids

29.82

Weight (kDa)

9.2

Isoelectric Point (pI)

46.46

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 88
AccI GTMKAC 1 cut(s) 70
AciI CCGC 1 cut(s) 726
AclWI GGATC 1 cut(s) 36
AcsI RAATTY 2 cut(s) 148, 470
AcuI CTGAAG 1 cut(s) 645
AcvI CACGTG 1 cut(s) 263
AcyI GRCGYC 1 cut(s) 67
AfaI GTAC 2 cut(s) 270, 589
AfiI CCNNNNNNNGG 3 cut(s) 63, 725, 825
AgsI TTSAA 3 cut(s) 285, 426, 470
AjiI CACGTC 1 cut(s) 85
AluBI AGCT 3 cut(s) 239, 362, 649
AluI AGCT 3 cut(s) 239, 362, 649
Alw26I GTCTC 2 cut(s) 625, 793
AlwI GGATC 1 cut(s) 36
Ama87I CYCGRG 1 cut(s) 377
AoxI GGCC 2 cut(s) 330, 828
ApaI GGGCCC 1 cut(s) 832
ApeKI GCWGC 1 cut(s) 671
ApoI RAATTY 2 cut(s) 148, 470
AspLEI GCGC 2 cut(s) 63, 708
AspS9I GGNCC 4 cut(s) 46, 331, 828, 829
AvaI CYCGRG 1 cut(s) 377
AvaII GGWCC 1 cut(s) 46
BaeGI GKGCMC 4 cut(s) 262, 279, 744, 832
BanI GGYRCC 1 cut(s) 88
BanII GRGCYC 2 cut(s) 818, 832
BbrPI CACGTG 1 cut(s) 263
BbvI GCAGC 1 cut(s) 683
BccI CCATC 5 cut(s) 4, 548, 635, 805, 840
BceAI ACGGC 1 cut(s) 684
BcoDI GTCTC 2 cut(s) 625, 793
BfmI CTRYAG 5 cut(s) 186, 296, 308, 357, 489
BfoI RGCGCY 2 cut(s) 64, 709
BisI GCNGC 1 cut(s) 672
BlsI GCNGC 1 cut(s) 673
BmcAI AGTACT 1 cut(s) 589
Bme18I GGWCC 1 cut(s) 46
BmeT110I CYCGRG 1 cut(s) 377
BmgBI CACGTC 1 cut(s) 85
BmgT120I GGNCC 4 cut(s) 46, 331, 828, 829
BmiI GGNNCC 5 cut(s) 48, 90, 217, 817, 830
BoxI GACNNNNGTC 1 cut(s) 44
BplI GAGNNNNNCTC 2 cut(s) 200, 232
BpmI CTGGAG 1 cut(s) 348
BsaAI YACGTR 1 cut(s) 263
BsaBI GATNNNNATC 1 cut(s) 372
BsaHI GRCGYC 1 cut(s) 67
BsaJI CCNNGG 1 cut(s) 316
BsaWI WCCGGW 1 cut(s) 818
BsaXI ACNNNNNCTCC 2 cut(s) 346, 376
Bsc4I CCNNNNNNNGG 3 cut(s) 63, 725, 825
Bse118I RCCGGY 1 cut(s) 63
Bse1I ACTGG 1 cut(s) 719
Bse8I GATNNNNATC 1 cut(s) 372
BseDI CCNNGG 1 cut(s) 316
BseGI GGATG 5 cut(s) 19, 85, 136, 511, 663
BseJI GATNNNNATC 1 cut(s) 372
BseLI CCNNNNNNNGG 3 cut(s) 63, 725, 825
BseMII CTCAG 3 cut(s) 15, 65, 804
BseNI ACTGG 1 cut(s) 719
BseRI GAGGAG 3 cut(s) 20, 591, 736
BseSI GKGCMC 4 cut(s) 262, 279, 744, 832
BseXI GCAGC 1 cut(s) 683
BseYI CCCAGC 1 cut(s) 392
BshFI GGCC 2 cut(s) 332, 830
BshNI GGYRCC 1 cut(s) 88
BsiHKCI CYCGRG 1 cut(s) 377
BsiSI CCGG 2 cut(s) 64, 819
BslFI GGGAC 1 cut(s) 32
BslI CCNNNNNNNGG 3 cut(s) 63, 725, 825
BsmAI GTCTC 2 cut(s) 625, 793
BsmFI GGGAC 1 cut(s) 32
BsmI GAATGC 1 cut(s) 106
BsnI GGCC 2 cut(s) 332, 830
BsoBI CYCGRG 1 cut(s) 377
Bsp120I GGGCCC 1 cut(s) 828
Bsp1286I GDGCHC 5 cut(s) 262, 279, 744, 818, 832
Bsp143I GATC 2 cut(s) 28, 193
Bsp19I CCATGG 1 cut(s) 316
BspACI CCGC 1 cut(s) 726
BspANI GGCC 2 cut(s) 332, 830
BspCNI CTCAG 3 cut(s) 16, 66, 803
BspHI TCATGA 2 cut(s) 196, 835
BspLI GGNNCC 5 cut(s) 48, 90, 217, 817, 830
BspPI GGATC 1 cut(s) 36
BspT107I GGYRCC 1 cut(s) 88
BsrFI RCCGGY 1 cut(s) 63
BsrI ACTGG 1 cut(s) 719
BssAI RCCGGY 1 cut(s) 63
BssECI CCNNGG 1 cut(s) 316
BssMI GATC 2 cut(s) 28, 193
BssNI GRCGYC 1 cut(s) 67
BssT1I CCWWGG 1 cut(s) 316
Bst4CI ACNGT 2 cut(s) 800, 808
Bst6I CTCTTC 1 cut(s) 532
BstACI GRCGYC 1 cut(s) 67
BstBAI YACGTR 1 cut(s) 263
BstC8I GCNNGC 1 cut(s) 65
BstDEI CTNAG 4 cut(s) 24, 74, 591, 790
BstDSI CCRYGG 1 cut(s) 316
BstF5I GGATG 5 cut(s) 19, 85, 136, 511, 663
BstH2I RGCGCY 2 cut(s) 64, 709
BstHHI GCGC 2 cut(s) 63, 708
BstKTI GATC 2 cut(s) 31, 196
BstMAI GTCTC 2 cut(s) 625, 793
BstMBI GATC 2 cut(s) 28, 193
BstPAI GACNNNNGTC 1 cut(s) 44
BstSFI CTRYAG 5 cut(s) 186, 296, 308, 357, 489
BstSLI GKGCMC 4 cut(s) 262, 279, 744, 832
BstV1I GCAGC 1 cut(s) 683
BsuRI GGCC 2 cut(s) 332, 830
BtgI CCRYGG 1 cut(s) 316
BtrI CACGTC 1 cut(s) 85
BtsCI GGATG 5 cut(s) 19, 85, 136, 511, 663
Cac8I GCNNGC 1 cut(s) 65
CciI TCATGA 2 cut(s) 196, 835
CfoI GCGC 2 cut(s) 63, 708
Cfr10I RCCGGY 1 cut(s) 63
Cfr13I GGNCC 4 cut(s) 46, 331, 828, 829
CseI GACGC 1 cut(s) 56
Csp6I GTAC 2 cut(s) 269, 588
CviAII CATG 4 cut(s) 111, 197, 317, 836
CviQI GTAC 2 cut(s) 269, 588
DdeI CTNAG 4 cut(s) 24, 74, 591, 790
DpnI GATC 2 cut(s) 30, 195
DpnII GATC 2 cut(s) 28, 193
Eam1104I CTCTTC 1 cut(s) 532
EarI CTCTTC 1 cut(s) 532
Eco130I CCWWGG 1 cut(s) 316
Eco24I GRGCYC 2 cut(s) 818, 832
Eco47I GGWCC 1 cut(s) 46
Eco57I CTGAAG 1 cut(s) 645
Eco72I CACGTG 1 cut(s) 263
Eco88I CYCGRG 1 cut(s) 377
EcoO109I RGGNCCY 1 cut(s) 46
EcoRI GAATTC 1 cut(s) 148
EcoT14I CCWWGG 1 cut(s) 316
EcoT38I GRGCYC 2 cut(s) 818, 832
ErhI CCWWGG 1 cut(s) 316
FaeI CATG 4 cut(s) 114, 200, 320, 839
FaiI YATR 6 cut(s) 112, 137, 198, 318, 711, 837
FaqI GGGAC 1 cut(s) 32
FatI CATG 4 cut(s) 110, 196, 316, 835
FblI GTMKAC 1 cut(s) 70
Fnu4HI GCNGC 1 cut(s) 672
FokI GGATG 5 cut(s) 26, 92, 143, 518, 670
FriOI GRGCYC 2 cut(s) 818, 832
Fsp4HI GCNGC 1 cut(s) 672
GlaI GCGC 2 cut(s) 62, 707
GluI GCNGC 1 cut(s) 672
GsaI CCCAGC 1 cut(s) 396
GsuI CTGGAG 1 cut(s) 348
HaeII RGCGCY 2 cut(s) 64, 709
HaeIII GGCC 2 cut(s) 332, 830
HapII CCGG 2 cut(s) 64, 819
HgaI GACGC 1 cut(s) 56
HhaI GCGC 2 cut(s) 63, 708
Hin1I GRCGYC 1 cut(s) 67
Hin1II CATG 4 cut(s) 114, 200, 320, 839
Hin6I GCGC 2 cut(s) 61, 706
HinP1I GCGC 2 cut(s) 61, 706
HincII GTYRAC 1 cut(s) 71
HindII GTYRAC 1 cut(s) 71
HinfI GANTC 4 cut(s) 122, 368, 422, 436
HpaII CCGG 2 cut(s) 64, 819
Hpy166II GTNNAC 2 cut(s) 71, 520
Hpy188I TCNGA 3 cut(s) 54, 421, 625
Hpy188III TCNNGA 7 cut(s) 153, 175, 197, 365, 377, 379, 836
Hpy8I GTNNAC 2 cut(s) 71, 520
Hpy99I CGWCG 1 cut(s) 72
HpyAV CCTTC 4 cut(s) 473, 494, 604, 620
HpyCH4III ACNGT 2 cut(s) 800, 808
HpyCH4IV ACGT 2 cut(s) 84, 262
HpyCH4V TGCA 1 cut(s) 106
HpyF3I CTNAG 4 cut(s) 24, 74, 591, 790
HpySE526I ACGT 2 cut(s) 84, 262
Hsp92I GRCGYC 1 cut(s) 67
Hsp92II CATG 4 cut(s) 114, 200, 320, 839
HspAI GCGC 2 cut(s) 61, 706
KroI GCCGGC 1 cut(s) 63
KroNI GCCGGC 1 cut(s) 65
Kzo9I GATC 2 cut(s) 28, 193
LmnI GCTCC 3 cut(s) 221, 367, 821
Lsp1109I GCAGC 1 cut(s) 683
MaeII ACGT 2 cut(s) 84, 262
MaeIII GTNAC 1 cut(s) 794
MalI GATC 2 cut(s) 30, 195
MboI GATC 2 cut(s) 28, 193
MboII GAAGA 3 cut(s) 203, 466, 549
MhlI GDGCHC 5 cut(s) 262, 279, 744, 818, 832
MluCI AATT 4 cut(s) 148, 204, 325, 470
MmeI TCCRAC 2 cut(s) 77, 774
MreI CGCCGGCG 1 cut(s) 63
MroNI GCCGGC 1 cut(s) 63
MseI TTAA 2 cut(s) 203, 803
MspA1I CMGCKG 1 cut(s) 726
MspI CCGG 2 cut(s) 64, 819
Mva1269I GAATGC 1 cut(s) 106
NaeI GCCGGC 1 cut(s) 65
NcoI CCATGG 1 cut(s) 316
NdeII GATC 2 cut(s) 28, 193
NgoMIV GCCGGC 1 cut(s) 63
NlaIII CATG 4 cut(s) 114, 200, 320, 839
NlaIV GGNNCC 5 cut(s) 48, 90, 217, 817, 830
PaeR7I CTCGAG 1 cut(s) 377
PagI TCATGA 2 cut(s) 196, 835
PctI GAATGC 1 cut(s) 106
PdiI GCCGGC 1 cut(s) 65
PfeI GAWTC 4 cut(s) 122, 368, 422, 436
PkrI GCNGC 1 cut(s) 673
PmaCI CACGTG 1 cut(s) 263
PmlI CACGTG 1 cut(s) 263
Ppu21I YACGTR 1 cut(s) 263
PpuMI RGGWCCY 1 cut(s) 46
PshAI GACNNNNGTC 1 cut(s) 44
Psp5II RGGWCCY 1 cut(s) 46
PspCI CACGTG 1 cut(s) 263
PspFI CCCAGC 1 cut(s) 392
PspN4I GGNNCC 5 cut(s) 48, 90, 217, 817, 830
PspOMI GGGCCC 1 cut(s) 828
PspPI GGNCC 4 cut(s) 46, 331, 828, 829
PspPPI RGGWCCY 1 cut(s) 46
RsaI GTAC 2 cut(s) 270, 589
RsaNI GTAC 2 cut(s) 269, 588
SalI GTCGAC 1 cut(s) 69
SaqAI TTAA 2 cut(s) 203, 803
SatI GCNGC 1 cut(s) 672
Sau3AI GATC 2 cut(s) 28, 193
Sau96I GGNCC 4 cut(s) 46, 331, 828, 829
ScaI AGTACT 1 cut(s) 589
SduI GDGCHC 5 cut(s) 262, 279, 744, 818, 832
SfcI CTRYAG 5 cut(s) 186, 296, 308, 357, 489
Sfr274I CTCGAG 1 cut(s) 377
SgrAI CRCCGGYG 1 cut(s) 63
SinI GGWCC 1 cut(s) 46
SlaI CTCGAG 1 cut(s) 377
SmlI CTYRAG 1 cut(s) 377
SmoI CTYRAG 1 cut(s) 377
Sse9I AATT 4 cut(s) 148, 204, 325, 470
SsiI CCGC 1 cut(s) 726
StyI CCWWGG 1 cut(s) 316
TaaI ACNGT 2 cut(s) 800, 808
TaiI ACGT 2 cut(s) 87, 265
TaqI TCGA 4 cut(s) 31, 70, 378, 685
TasI AATT 4 cut(s) 148, 204, 325, 470
TatI WGTACW 1 cut(s) 587
TfiI GAWTC 4 cut(s) 122, 368, 422, 436
Tru1I TTAA 2 cut(s) 203, 803
Tru9I TTAA 2 cut(s) 203, 803
TseI GCWGC 1 cut(s) 671
TspDTI ATGAA 2 cut(s) 99, 674
TspGWI ACGGA 1 cut(s) 56
VpaK11BI GGWCC 1 cut(s) 46
XapI RAATTY 2 cut(s) 148, 470
XhoI CTCGAG 1 cut(s) 377
XmiI GTMKAC 1 cut(s) 70
ZrmI AGTACT 1 cut(s) 589
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.