FvH4_2g17220

Phototropin-2-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0004987
Physical Location & Seq
Reverse (-)
14897241 .. 14907487
10247 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g17220.t3

Sequence Viewer

Length: 2835 bp
ATGGAGAAACCAAAGGCAGCTGCTGGAGATAAGCAGAAATTAGCTGCGCGAGAGAGAAATGATGTCGGAATACATCCTAGTAGTAAGCTGGAAAGTGGATCATCAAGCACTTCATTTAAGTGGATGGCATTCGATACACAAGCAGCTGAAGAGTCTAGCAACACTGCTGCTGCCTCTTCTGGTGACACTGATGGTGTTGTAGATTCAAGAATCATAACTGAGAAGGCAAGCATAGTGGCAAGGACAGCAGAATGGGGAGTTGTGGTGAAGCCGGATGATGTTGTTGAGGGGAGCTTTAAGGCCATAGGGAGGTCTTCAGATGATGGGAACAGAAGCAAAAACACATCAGGAAGATTTGAATCAACAAGGACATCATCAGAGTCAAGTCATGGGTCTGATCAAGTGCCTAATCCAAGGGTGTCAAGTGAGTTGAAGACAGCTTTGGCTACATTGCAGCAGACTTTTGTTGTATCTGATGCCACAAAACCTGATTGCCCAATCATGTATGCCAGCAGTGGCTTCTTTACCATGACTGGTTACTCTTCAAAAGAGGTCATTGGAAGAAACTGTCGGTTTCTTCAGGGACCGGAAACAGACCAGAATGAAGTGGCCAAAATCCGAAACGCAGTCAAAACTGGTTCAAGCTACTGCGGTAGGCTCTACAACTACAAGAAAGATGGCACTCCTTTCTGGAATCTTCTCACCGTCACCCCAATCAAAGATGACACTGGAAAAACCATCAAGTTTATTGGAATGCAGGTTGAGGTCAGCAAGTTCACAGAAGGGGTGAATGAGAAGGCATTGAGGCCAAATGGGTTGCCCAAGTCACTCATCCGTTATGACGCTCGACAAAAGGAGAAGGCATTAGGTTCTATTGCGGAAGTTGTACAAACTGTGAAACATCCACGTAAAAATCATGAAGAGCCTGATAACATGAACCTTGATTATGTTCTTCCTAAATCTGCTGCAATGAGCACGCCCGGCAGACAAACTCCTCAGGCGGATGTGAAGGGTGATGCATCTCGGGGGAGATTTTCCCAGGATGCAGGCAAATATCCTAAAAAGTCAGAGCGCAGCCCCTCATTGGGAACTAGATCAAAGTCTCTAACTGCAGGCAGGCTTGAAAAGGAACCAATTGTTGAACCAGAGGTTTTAATGACCACGGATATAGAACGCTCTGATAGTTGGGACCGCACTGAAAGAGAAAGGGATATACGCCAAGGAATTGACCTAGCAACCACATTGGAACGCATTGAAAAGAACTTTGTGATTTCTGATCCTAGAATTCCTGATAATCCAATTATATTTGCATCTGATAGTTTTCTAGAACTGACGGAATATACACGTGAGGAAATTCTGGGAAGAAATTGTCGTTTTCTTCAAGGTCCCGAAACAGATCAAGCAACAGTCCAAAAAATAAGAGATGCCATCAGAGAACAACGTGAAATTACTGTACAGTTAATCAACTATACTAAGAGTGGAAAGAAGTTTTGGAACTTGTTCCACTTGCAACCCATGCGTGACCATAAGGGTGAACTTCAATATTTCATTGGTGTCCAATTGGATGGTAGTGATCATGTAGAACCTCTGCGAAATCGCCTATCAGAGAGAGCAGAGCTAGAAAGTGCTAAAGTGGTGAAAGCTACTGCAGTAAATGTTAACGAGGCTGTCCGAGAACTTCCTGATGCGAACTTGAGACCAGAAGATCTGTGGGCAATTCATTCTCAGCCAGTCTTCCCGAAACCTCACAAGAGGGATAGTGCTAGTTGGCTAGCAATGCAAGAGATTACATCACGTGGCGAAAAAATTGATCTGCGTCATTTTAAGCCAATAAAACCCTTGGGTTGTGGCGATACTGGCAGTGTCCATTTGGTGGAACTACGTGGTACTTCTATATTGTATGCTATGAAGGCAATGGAGAAGTCAATAATGTTGAATCGTAACAAGGTTCACCGAGCATGCACTGAACGGGAAATAATTTCACAACTGGACCATCCTTTTCTTCCTACGCTATACACTTCATTTGAGACTTCTACACACGTTTGTTTGATAACAGACTTTTGCTCAGGCGGAGAGTTATTTGCTTTGCTTGATAAGCAACCTATGAAATTTTTCAAGGAGGACTCTGCTAGGTTCTATGCTGCAGAGGTTGTCATTGCTTTGGAATACCTTCACTGTCTAGGAATAATTTATCGCGACCTTAAGCCTGAGAATATCTTACTCCAGAAGGACGGACATATTGTCTTAACAGACTTCGATTTATCATTTCTGGCGTCCTGTAAACCACAGATTATTAGGCATCAGTCACCTAAGAATAGAAGGAGATCTAGTAGTCAACCGCCTCCAACATTTGTTGCAGAACCAGTTAATCAATCAAATTCCTTCGTTGGAACCGAAGAGTACATTGCTCCTGAAATTGTTACCGGTACAGGCCACAGCAGTGCTATTGATTGGTGGGCTCTTGGTATTTTCTTGTATGAGATGCTATATGGCCGCACACCTTTCAGGGGGAAAAATAGACAGAGAACATTCGCCAACATTTTGCATAAAGATCTGACCTTTCCAAGTAGCATTCCGGTGAGCCTTGCAGCGCGGCAGTTGATCAATGCGTTGTTGCAAAGAGACCCTGCCACACGTTTAGGATCCACTACTGGTGCAAATGAAATCAAACAACATCCTTTTTTCCGTGGAATTACTTGGCCTTTGATCCGTTGCATGAGCCCTCCTCCCTTAGAAGTGCCTCTTCAGCCTATTGGTATTGATCCACAGGCCAAGGATATATCGTGGGAAGATGATGGGGTTCTTGTAAATGCAATGGATATGGATATTTTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000166 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005773 GO:0005794 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006996 GO:0007154 GO:0007165 GO:0007623 GO:0008150 GO:0008152 GO:0009314 GO:0009416 GO:0009605 GO:0009606 GO:0009628 GO:0009637 GO:0009638 GO:0009657 GO:0009658 GO:0009719 GO:0009725 GO:0009735 GO:0009785 GO:0009881 GO:0009882 GO:0009898 GO:0009902 GO:0009903 GO:0009904 GO:0009986 GO:0009987 GO:0010033 GO:0010118 GO:0010119 GO:0010155 GO:0010181 GO:0010359 GO:0010360 GO:0010361 GO:0010362 GO:0012505 GO:0016020 GO:0016043 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0019750 GO:0022898 GO:0023052 GO:0030522 GO:0032409 GO:0032410 GO:0032412 GO:0032413 GO:0032553 GO:0032879 GO:0034762 GO:0034763 GO:0034765 GO:0034766 GO:0035556 GO:0036094 GO:0036211 GO:0038023 GO:0042221 GO:0042802 GO:0043167 GO:0043168 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043269 GO:0043271 GO:0043412 GO:0044070 GO:0044092 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044425 GO:0044444 GO:0044459 GO:0044464 GO:0046777 GO:0048037 GO:0048511 GO:0048519 GO:0050662 GO:0050789 GO:0050794 GO:0050896 GO:0051049 GO:0051051 GO:0051179 GO:0051234 GO:0051640 GO:0051641 GO:0051644 GO:0051649 GO:0051656 GO:0051667 GO:0051716 GO:0060089 GO:0065007 GO:0065009 GO:0071214 GO:0071478 GO:0071482 GO:0071483 GO:0071704 GO:0071840 GO:0071944 GO:0097159 GO:0097367 GO:0098552 GO:0098562 GO:0104004 GO:0140096 GO:1901265 GO:1901363 GO:1901564 GO:1903792 GO:1903959 GO:1903960 GO:1904062
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PAS_9 Pkinase

Protein Analysis

945

Amino Acids

105.63

Weight (kDa)

7.6

Isoelectric Point (pI)

44.7

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PAS_9 PF13426 161 - 257 3.4e-20 PAS domain
PAS_3 PF08447 167 - 251 2.8e-08 PAS fold
PAS PF00989 167 - 252 7.1e-08 PAS fold
PAS_9 PF13426 430 - 522 3.2e-20 PAS domain
PAS_3 PF08447 434 - 519 9.5e-07 PAS fold
PAS PF00989 434 - 522 5.1e-07 PAS fold
Pkinase PF00069 610 - 895 2.2e-60 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 611 - 758 1.7e-16 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 748
AccB7I CCANNNNNTGG 1 cut(s) 1873
AccII CGCG 3 cut(s) 49, 2196, 2593
AciI CCGC 8 cut(s) 651, 878, 1001, 1192, 2070, 2339, 2494, 2593
AclWI GGATC 6 cut(s) 106, 1271, 2637, 2650, 2701, 2756
AcoI YGGCCR 2 cut(s) 609, 2491
AcsI RAATTY 4 cut(s) 1284, 1353, 2108, 2377
AcuI CTGAAG 4 cut(s) 168, 300, 563, 2729
AcvI CACGTG 2 cut(s) 1346, 1796
AcyI GRCGYC 1 cut(s) 2273
AfaI GTAC 5 cut(s) 888, 1455, 1888, 2402, 2428
AfiI CCNNNNNNNGG 5 cut(s) 309, 1084, 1085, 1873, 2507
AflII CTTAAG 1 cut(s) 2201
AflIII ACRYGT 3 cut(s) 1343, 2038, 2633
AgeI ACCGGT 1 cut(s) 2423
AhdI GACNNNNNGTC 1 cut(s) 2240
AjnI CCWGG 1 cut(s) 1038
AjuI GAANNNNNNNTTGG 4 cut(s) 425, 457, 1474, 1506
AleI CACNNNNGTG 1 cut(s) 2439
AluBI AGCT 9 cut(s) 20, 44, 88, 146, 294, 440, 645, 1618, 1643
AluI AGCT 9 cut(s) 20, 44, 88, 146, 294, 440, 645, 1618, 1643
Alw21I GWGCWC 1 cut(s) 977
Alw26I GTCTC 4 cut(s) 1107, 1690, 2021, 2616
AlwI GGATC 6 cut(s) 106, 1271, 2637, 2650, 2701, 2756
AlwNI CAGNNNCTG 1 cut(s) 23
Ama87I CYCGRG 1 cut(s) 1023
AoxI GGCC 7 cut(s) 300, 609, 806, 2431, 2491, 2699, 2769
ApoI RAATTY 4 cut(s) 1284, 1353, 2108, 2377
AsiGI ACCGGT 1 cut(s) 2423
Asp700I GAANNNNTTC 3 cut(s) 1499, 2111, 2169
AspLEI GCGC 3 cut(s) 49, 1074, 2593
AspS9I GGNCC 4 cut(s) 584, 1189, 1385, 1990
AsuC2I CCSGG 1 cut(s) 981
AsuNHI GCTAGC 1 cut(s) 1771
AvaI CYCGRG 1 cut(s) 1023
AvaII GGWCC 4 cut(s) 584, 1189, 1385, 1990
AxyI CCTNAGG 1 cut(s) 996
BalI TGGCCA 1 cut(s) 611
BamHI GGATCC 1 cut(s) 2642
BanII GRGCYC 2 cut(s) 2461, 2723
BbrPI CACGTG 2 cut(s) 1346, 1796
BbsI GAAGAC 3 cut(s) 306, 440, 1726
Bbv12I GWGCWC 1 cut(s) 977
BccI CCATC 9 cut(s) 118, 185, 317, 671, 746, 1436, 1559, 2001, 2789
BciT130I CCWGG 1 cut(s) 1040
BclI TGATCA 3 cut(s) 397, 1573, 2601
BcnI CCSGG 1 cut(s) 981
BcoDI GTCTC 4 cut(s) 1107, 1690, 2021, 2616
BfmI CTRYAG 3 cut(s) 1110, 1647, 2142
BfrI CTTAAG 1 cut(s) 2201
BfuAI ACCTGC 1 cut(s) 748
BglII AGATCT 3 cut(s) 1705, 2324, 2551
Bme1390I CCNGG 2 cut(s) 981, 1040
Bme18I GGWCC 4 cut(s) 584, 1189, 1385, 1990
BmeRI GACNNNNNGTC 1 cut(s) 2240
BmeT110I CYCGRG 1 cut(s) 1023
BmgT120I GGNCC 4 cut(s) 584, 1189, 1385, 1990
BmiI GGNNCC 6 cut(s) 585, 1131, 1190, 1387, 2392, 2644
BmrFI CCNGG 2 cut(s) 981, 1040
BmsI GCATC 9 cut(s) 466, 1006, 1028, 1033, 1319, 1414, 1675, 2308, 2472
BmtI GCTAGC 1 cut(s) 1775
BpiI GAAGAC 3 cut(s) 306, 440, 1726
BplI GAGNNNNNCTC 2 cut(s) 2710, 2742
BpmI CTGGAG 2 cut(s) 45, 2207
Bpu10I CCTNAGC 1 cut(s) 2065
BpuEI CTTGAG 1 cut(s) 1714
BpuMI CCSGG 1 cut(s) 981
BsaAI YACGTR 4 cut(s) 908, 1346, 1796, 1883
BsaBI GATNNNNATC 1 cut(s) 358
BsaHI GRCGYC 1 cut(s) 2273
BsaI GGTCTC 2 cut(s) 1690, 2616
BsaJI CCNNGG 7 cut(s) 413, 1038, 1161, 1219, 1839, 2686, 2772
BsaWI WCCGGW 3 cut(s) 586, 2423, 2575
BsaXI ACNNNNNCTCC 4 cut(s) 249, 279, 2314, 2344
Bsc4I CCNNNNNNNGG 5 cut(s) 309, 1084, 1085, 1873, 2507
Bse118I RCCGGY 1 cut(s) 2423
Bse1I ACTGG 8 cut(s) 538, 640, 733, 1730, 1861, 1992, 2363, 2656
Bse21I CCTNAGG 1 cut(s) 996
Bse3DI GCAATG 7 cut(s) 449, 975, 1782, 1920, 2154, 2403, 2820
Bse8I GATNNNNATC 1 cut(s) 358
BseBI CCWGG 1 cut(s) 1040
BseDI CCNNGG 7 cut(s) 413, 1038, 1161, 1219, 1839, 2686, 2772
BseJI GATNNNNATC 1 cut(s) 358
BseLI CCNNNNNNNGG 5 cut(s) 309, 1084, 1085, 1873, 2507
BseMI GCAATG 7 cut(s) 449, 975, 1782, 1920, 2154, 2403, 2820
BseMII CTCAG 5 cut(s) 210, 1010, 1739, 2079, 2199
BseNI ACTGG 8 cut(s) 538, 640, 733, 1730, 1861, 1992, 2363, 2656
BseRI GAGGAG 2 cut(s) 984, 2715
Bsh1236I CGCG 3 cut(s) 49, 2196, 2593
BshFI GGCC 7 cut(s) 302, 611, 808, 2433, 2493, 2701, 2771
BshTI ACCGGT 1 cut(s) 2423
BsiHKAI GWGCWC 1 cut(s) 977
BsiHKCI CYCGRG 1 cut(s) 1023
BsiSI CCGG 5 cut(s) 272, 587, 981, 2424, 2576
BslFI GGGAC 3 cut(s) 597, 1202, 1371
BslI CCNNNNNNNGG 5 cut(s) 309, 1084, 1085, 1873, 2507
BsmAI GTCTC 4 cut(s) 1107, 1690, 2021, 2616
BsmFI GGGAC 3 cut(s) 597, 1202, 1371
BsmI GAATGC 3 cut(s) 128, 759, 2571
BsnI GGCC 7 cut(s) 302, 611, 808, 2433, 2493, 2701, 2771
Bso31I GGTCTC 2 cut(s) 1690, 2616
BsoBI CYCGRG 1 cut(s) 1023
Bsp1286I GDGCHC 3 cut(s) 977, 2461, 2723
Bsp1407I TGTACA 2 cut(s) 886, 1453
Bsp68I TCGCGA 1 cut(s) 2196
BspACI CCGC 8 cut(s) 651, 878, 1001, 1192, 2070, 2339, 2494, 2593
BspANI GGCC 7 cut(s) 302, 611, 808, 2433, 2493, 2701, 2771
BspCNI CTCAG 5 cut(s) 211, 1009, 1738, 2078, 2200
BspFNI CGCG 3 cut(s) 49, 2196, 2593
BspHI TCATGA 1 cut(s) 916
BspLI GGNNCC 6 cut(s) 585, 1131, 1190, 1387, 2392, 2644
BspMAI CTGCAG 3 cut(s) 1114, 1651, 2146
BspMI ACCTGC 1 cut(s) 748
BspOI GCTAGC 1 cut(s) 1775
BspPI GGATC 6 cut(s) 106, 1271, 2637, 2650, 2701, 2756
BspQI GCTCTTC 1 cut(s) 915
BspTI CTTAAG 1 cut(s) 2201
BspTNI GGTCTC 2 cut(s) 1690, 2616
BsrDI GCAATG 7 cut(s) 449, 975, 1782, 1920, 2154, 2403, 2820
BsrFI RCCGGY 1 cut(s) 2423
BsrGI TGTACA 2 cut(s) 886, 1453
BsrI ACTGG 8 cut(s) 538, 640, 733, 1730, 1861, 1992, 2363, 2656
BssAI RCCGGY 1 cut(s) 2423
BssECI CCNNGG 7 cut(s) 413, 1038, 1161, 1219, 1839, 2686, 2772
BssNI GRCGYC 1 cut(s) 2273
BssT1I CCWWGG 4 cut(s) 413, 1219, 1839, 2772
Bst2UI CCWGG 1 cut(s) 1040
Bst4CI ACNGT 7 cut(s) 569, 706, 895, 1408, 1453, 1458, 2177
Bst6I CTCTTC 6 cut(s) 144, 181, 547, 915, 2391, 2748
BstACI GRCGYC 1 cut(s) 2273
BstAFI CTTAAG 1 cut(s) 2201
BstAPI GCANNNNNTGC 1 cut(s) 1516
BstAUI TGTACA 2 cut(s) 886, 1453
BstBAI YACGTR 4 cut(s) 908, 1346, 1796, 1883
BstC8I GCNNGC 8 cut(s) 229, 511, 977, 1048, 1114, 1118, 1773, 1960
BstDEI CTNAG 8 cut(s) 219, 996, 1473, 1725, 2065, 2208, 2310, 2731
BstDSI CCRYGG 2 cut(s) 1161, 2686
BstFNI CGCG 3 cut(s) 49, 2196, 2593
BstHHI GCGC 3 cut(s) 49, 1074, 2593
BstMAI GTCTC 4 cut(s) 1107, 1690, 2021, 2616
BstMWI GCNNNNNNNGC 8 cut(s) 245, 981, 1516, 1777, 1857, 1910, 2095, 2746
BstNI CCWGG 1 cut(s) 1040
BstNSI RCATGY 1 cut(s) 1962
BstSCI CCNGG 2 cut(s) 979, 1038
BstSFI CTRYAG 3 cut(s) 1110, 1647, 2142
BstUI CGCG 3 cut(s) 49, 2196, 2593
BstV2I GAAGAC 3 cut(s) 306, 440, 1726
BstX2I RGATCY 4 cut(s) 1705, 2324, 2551, 2642
BstXI CCANNNNNNTGG 1 cut(s) 1565
BstYI RGATCY 4 cut(s) 1705, 2324, 2551, 2642
Bsu36I CCTNAGG 1 cut(s) 996
BsuRI GGCC 7 cut(s) 302, 611, 808, 2433, 2493, 2701, 2771
BtgI CCRYGG 2 cut(s) 1161, 2686
BtsI GCAGTG 4 cut(s) 162, 520, 1867, 2446
BtsIMutI CAGTG 9 cut(s) 162, 186, 520, 726, 1194, 1867, 1962, 2173, 2446
BtuMI TCGCGA 1 cut(s) 2196
BveI ACCTGC 1 cut(s) 748
Cac8I GCNNGC 8 cut(s) 229, 511, 977, 1048, 1114, 1118, 1773, 1960
CaiI CAGNNNCTG 1 cut(s) 23
CciI TCATGA 1 cut(s) 916
CfoI GCGC 3 cut(s) 49, 1074, 2593
Cfr10I RCCGGY 1 cut(s) 2423
Cfr13I GGNCC 4 cut(s) 584, 1189, 1385, 1990
CseI GACGC 3 cut(s) 851, 1805, 2262
Csp6I GTAC 5 cut(s) 887, 1454, 1887, 2401, 2427
CspAI ACCGGT 1 cut(s) 2423
CspCI CAANNNNNGTGG 2 cut(s) 216, 251
CviAII CATG 9 cut(s) 389, 502, 529, 917, 934, 1516, 1577, 1959, 2716
CviQI GTAC 5 cut(s) 887, 1454, 1887, 2401, 2427
DdeI CTNAG 8 cut(s) 219, 996, 1473, 1725, 2065, 2208, 2310, 2731
DriI GACNNNNNGTC 1 cut(s) 2240
EaeI YGGCCR 2 cut(s) 609, 2491
Eam1104I CTCTTC 6 cut(s) 144, 181, 547, 915, 2391, 2748
Eam1105I GACNNNNNGTC 1 cut(s) 2240
EarI CTCTTC 6 cut(s) 144, 181, 547, 915, 2391, 2748
EciI GGCGGA 2 cut(s) 1016, 2085
Eco130I CCWWGG 4 cut(s) 413, 1219, 1839, 2772
Eco24I GRGCYC 2 cut(s) 2461, 2723
Eco31I GGTCTC 2 cut(s) 1690, 2616
Eco47I GGWCC 4 cut(s) 584, 1189, 1385, 1990
Eco57I CTGAAG 4 cut(s) 168, 300, 563, 2729
Eco72I CACGTG 2 cut(s) 1346, 1796
Eco81I CCTNAGG 1 cut(s) 996
Eco88I CYCGRG 1 cut(s) 1023
EcoO109I RGGNCCY 1 cut(s) 1385
EcoRI GAATTC 1 cut(s) 1284
EcoRII CCWGG 1 cut(s) 1038
EcoT14I CCWWGG 4 cut(s) 413, 1219, 1839, 2772
EcoT22I ATGCAT 1 cut(s) 1021
EcoT38I GRGCYC 2 cut(s) 2461, 2723
ErhI CCWWGG 4 cut(s) 413, 1219, 1839, 2772
FaeI CATG 9 cut(s) 392, 505, 532, 920, 937, 1519, 1580, 1962, 2719
FalI AAGNNNNNCTT 2 cut(s) 2727, 2759
FaqI GGGAC 3 cut(s) 597, 1202, 1371
FatI CATG 9 cut(s) 388, 501, 528, 916, 933, 1515, 1576, 1958, 2715
FbaI TGATCA 3 cut(s) 397, 1573, 2601
FriOI GRGCYC 2 cut(s) 2461, 2723
GlaI GCGC 3 cut(s) 48, 1073, 2592
GsuI CTGGAG 2 cut(s) 45, 2207
HaeIII GGCC 7 cut(s) 302, 611, 808, 2433, 2493, 2701, 2771
HapII CCGG 5 cut(s) 272, 587, 981, 2424, 2576
HgaI GACGC 3 cut(s) 851, 1805, 2262
HhaI GCGC 3 cut(s) 49, 1074, 2593
Hin1I GRCGYC 1 cut(s) 2273
Hin1II CATG 9 cut(s) 392, 505, 532, 920, 937, 1519, 1580, 1962, 2719
Hin6I GCGC 3 cut(s) 47, 1072, 2591
HinP1I GCGC 3 cut(s) 47, 1072, 2591
HincII GTYRAC 2 cut(s) 1660, 2336
HindII GTYRAC 2 cut(s) 1660, 2336
HinfI GANTC 8 cut(s) 152, 203, 210, 359, 380, 694, 1936, 2123
HpaI GTTAAC 1 cut(s) 1660
HpaII CCGG 5 cut(s) 272, 587, 981, 2424, 2576
Hpy166II GTNNAC 6 cut(s) 777, 1535, 1660, 1951, 2282, 2336
Hpy8I GTNNAC 6 cut(s) 777, 1535, 1660, 1951, 2282, 2336
HpyCH4III ACNGT 7 cut(s) 569, 706, 895, 1408, 1453, 1458, 2177
HpyCH4IV ACGT 7 cut(s) 907, 1345, 1441, 1795, 1882, 2040, 2635
HpyF10VI GCNNNNNNNGC 8 cut(s) 245, 981, 1516, 1777, 1857, 1910, 2095, 2746
HpyF3I CTNAG 8 cut(s) 219, 996, 1473, 1725, 2065, 2208, 2310, 2731
HpySE526I ACGT 7 cut(s) 907, 1345, 1441, 1795, 1882, 2040, 2635
Hsp92I GRCGYC 1 cut(s) 2273
Hsp92II CATG 9 cut(s) 392, 505, 532, 920, 937, 1519, 1580, 1962, 2719
HspAI GCGC 3 cut(s) 47, 1072, 2591
Ksp22I TGATCA 3 cut(s) 397, 1573, 2601
KspAI GTTAAC 1 cut(s) 1660
LguI GCTCTTC 1 cut(s) 915
LmnI GCTCC 2 cut(s) 291, 2413
LweI GCATC 9 cut(s) 466, 1006, 1028, 1033, 1319, 1414, 1675, 2308, 2472
MaeII ACGT 7 cut(s) 907, 1345, 1441, 1795, 1882, 2040, 2635
MaeIII GTNAC 8 cut(s) 182, 536, 706, 825, 1520, 1940, 2304, 2419
MfeI CAATTG 2 cut(s) 1134, 1559
MflI RGATCY 4 cut(s) 1705, 2324, 2551, 2642
MhlI GDGCHC 3 cut(s) 977, 2461, 2723
MlsI TGGCCA 1 cut(s) 611
MluNI TGGCCA 1 cut(s) 611
MlyI GAGTC 3 cut(s) 161, 389, 2117
MmeI TCCRAC 3 cut(s) 46, 2368, 2369
Mox20I TGGCCA 1 cut(s) 611
Mph1103I ATGCAT 1 cut(s) 1021
MroXI GAANNNNTTC 3 cut(s) 1499, 2111, 2169
MscI TGGCCA 1 cut(s) 611
MseI TTAA 9 cut(s) 117, 297, 1154, 1460, 1659, 1824, 2202, 2246, 2367
MslI CAYNNNNRTG 4 cut(s) 118, 1530, 2439, 2576
Msp20I TGGCCA 1 cut(s) 611
MspA1I CMGCKG 2 cut(s) 20, 146
MspCI CTTAAG 1 cut(s) 2201
MspI CCGG 5 cut(s) 272, 587, 981, 2424, 2576
MspR9I CCNGG 2 cut(s) 981, 1040
MunI CAATTG 2 cut(s) 1134, 1559
Mva1269I GAATGC 3 cut(s) 128, 759, 2571
MvaI CCWGG 1 cut(s) 1040
MvnI CGCG 3 cut(s) 49, 2196, 2593
MwoI GCNNNNNNNGC 8 cut(s) 245, 981, 1516, 1777, 1857, 1910, 2095, 2746
NciI CCSGG 1 cut(s) 981
NheI GCTAGC 1 cut(s) 1771
NlaIII CATG 9 cut(s) 392, 505, 532, 920, 937, 1519, 1580, 1962, 2719
NlaIV GGNNCC 6 cut(s) 585, 1131, 1190, 1387, 2392, 2644
NmuCI GTSAC 5 cut(s) 182, 706, 825, 1520, 2304
NruI TCGCGA 1 cut(s) 2196
NsiI ATGCAT 1 cut(s) 1021
NspI RCATGY 1 cut(s) 1962
OliI CACNNNNGTG 1 cut(s) 2439
PaeI GCATGC 1 cut(s) 1962
PagI TCATGA 1 cut(s) 916
PciSI GCTCTTC 1 cut(s) 915
PcsI WCGNNNNNNNCGW 1 cut(s) 2391
PctI GAATGC 3 cut(s) 128, 759, 2571
PdmI GAANNNNTTC 3 cut(s) 1499, 2111, 2169
PfeI GAWTC 5 cut(s) 203, 210, 359, 694, 1936
PflMI CCANNNNNTGG 1 cut(s) 1873
PinAI ACCGGT 1 cut(s) 2423
PleI GAGTC 3 cut(s) 160, 388, 2117
PmaCI CACGTG 2 cut(s) 1346, 1796
PmlI CACGTG 2 cut(s) 1346, 1796
PpsI GAGTC 3 cut(s) 160, 388, 2117
Ppu21I YACGTR 4 cut(s) 908, 1346, 1796, 1883
PpuMI RGGWCCY 1 cut(s) 1385
Psp5II RGGWCCY 1 cut(s) 1385
Psp6I CCWGG 1 cut(s) 1038
PspCI CACGTG 2 cut(s) 1346, 1796
PspGI CCWGG 1 cut(s) 1038
PspN4I GGNNCC 6 cut(s) 585, 1131, 1190, 1387, 2392, 2644
PspPI GGNCC 4 cut(s) 584, 1189, 1385, 1990
PspPPI RGGWCCY 1 cut(s) 1385
PstI CTGCAG 3 cut(s) 1114, 1651, 2146
PstNI CAGNNNCTG 1 cut(s) 23
PsuI RGATCY 4 cut(s) 1705, 2324, 2551, 2642
PvuII CAGCTG 2 cut(s) 20, 146
RruI TCGCGA 1 cut(s) 2196
RsaI GTAC 5 cut(s) 888, 1455, 1888, 2402, 2428
RsaNI GTAC 5 cut(s) 887, 1454, 1887, 2401, 2427
RseI CAYNNNNRTG 4 cut(s) 118, 1530, 2439, 2576
SapI GCTCTTC 1 cut(s) 915
SaqAI TTAA 9 cut(s) 117, 297, 1154, 1460, 1659, 1824, 2202, 2246, 2367
Sau96I GGNCC 4 cut(s) 584, 1189, 1385, 1990
SchI GAGTC 3 cut(s) 161, 389, 2117
ScrFI CCNGG 2 cut(s) 981, 1040
SduI GDGCHC 3 cut(s) 977, 2461, 2723
SfaNI GCATC 9 cut(s) 466, 1006, 1028, 1033, 1319, 1414, 1675, 2308, 2472
SfcI CTRYAG 3 cut(s) 1110, 1647, 2142
SinI GGWCC 4 cut(s) 584, 1189, 1385, 1990
SmiMI CAYNNNNRTG 4 cut(s) 118, 1530, 2439, 2576
SmlI CTYRAG 2 cut(s) 1693, 2201
SmoI CTYRAG 2 cut(s) 1693, 2201
SphI GCATGC 1 cut(s) 1962
SsiI CCGC 8 cut(s) 651, 878, 1001, 1192, 2070, 2339, 2494, 2593
SspI AATATT 1 cut(s) 1544
StyD4I CCNGG 2 cut(s) 979, 1038
StyI CCWWGG 4 cut(s) 413, 1219, 1839, 2772
TaaI ACNGT 7 cut(s) 569, 706, 895, 1408, 1453, 1458, 2177
TaiI ACGT 7 cut(s) 910, 1348, 1444, 1798, 1885, 2043, 2638
TaqI TCGA 3 cut(s) 132, 847, 2256
TatI WGTACW 3 cut(s) 886, 1453, 2400
TauI GCSGC 2 cut(s) 2496, 2596
TfiI GAWTC 5 cut(s) 203, 210, 359, 694, 1936
Tru1I TTAA 9 cut(s) 117, 297, 1154, 1460, 1659, 1824, 2202, 2246, 2367
Tru9I TTAA 9 cut(s) 117, 297, 1154, 1460, 1659, 1824, 2202, 2246, 2367
TscAI CASTG 9 cut(s) 169, 193, 520, 733, 1201, 1867, 1969, 2180, 2446
TseFI GTSAC 5 cut(s) 182, 706, 825, 1520, 2304
Tsp45I GTSAC 5 cut(s) 182, 706, 825, 1520, 2304
TspGWI ACGGA 6 cut(s) 824, 1178, 1349, 2247, 2675, 2699
TspRI CASTG 9 cut(s) 169, 193, 520, 733, 1201, 1867, 1969, 2180, 2446
Van91I CCANNNNNTGG 1 cut(s) 1873
Vha464I CTTAAG 1 cut(s) 2201
VpaK11BI GGWCC 4 cut(s) 584, 1189, 1385, 1990
XapI RAATTY 4 cut(s) 1284, 1353, 2108, 2377
XbaI TCTAGA 1 cut(s) 1324
XceI RCATGY 1 cut(s) 1962
XcmI CCANNNNNNNNNTGG 1 cut(s) 1707
XmnI GAANNNNTTC 3 cut(s) 1499, 2111, 2169
Zsp2I ATGCAT 1 cut(s) 1021
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.