Rroxscaffold_7G00186900

Phototropin-2-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0004987
Physical Location & Seq
Forward (+)
26243815 .. 26260131
16317 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00186900.1

Sequence Viewer

Length: 2700 bp
ATGGAGAAACCAGAGGCAGCTGGTGGAGATAAGCAGAAATTAGCAGCGCGAAAGAGCAATGATGTTGGAGTACATCCAAGTAGTAAGCTGGAAAGTGGATCATCAAGTACTTCATTTAAGTGGATGGCATTCGACACACAAGCAGCTGAAGAGTCTAACAACACTGCTGCTGCTGCTGCTGCTTCTGGTGACGTTGATGGTATTTTAGACTCAAAAATCATAACGGAGAAGGCGAGCATAGTGGCAAGGACAGCAGAATGGGGAGTTGTGGTGAAGCCGGATGATTCTGGTGAAGGAACTTTTAAGGCCGTAGGGAGGTCATCAGAGGATGGCAACAAAAGCAAAAACACATCAGGGAGATTTGAATCAACAAGGACATCATCAGAGTCAAGTCATGGTCGCTTTCTTCAGGGACCGGAAACAGACCAGAATGAAGTGGCCAAAATCCGAAACGCAGTCAAAACTGGGTCTAGCTACTGCGGTAGGCTCTTCAACTACAAGAAAGATGGCACTCCTTTTTGGAATCTTCTCACCGTCACCCCAATCAAAGATGACAATGGAAAAACCATCAAGTTCATTGGAATGCAGGTTGAGGTCAGCAAGTACACAGAAGGGGTGAATGAGAAGGCATTGAGGCCAAATGGGTTGCCCAAGTCACTAATCCGTTACGACGCTCGACAGAAGGAGAAGGCATTAGGCTCCATTGTTGAAGTTGTACAAACTGTAAAACATCCACGTTCTCACATGCAGGATGCTAGCAATGAGAATACTAAAAATCATGAAGAGCCGGATAACATGAACCTTAATTATGTTCTTCCAAAATCTGCTGCAATGAGTACATCCATAAGAGAAACTTCTCAGGCGGATGTGAAGGGTGATGCAACTCGAGGGAGATTTTCCCAGGATGCAGGCAAATATCCTAAAAAGTCAGAAAGCAGCCCCTCAATGGGATTTAGATCAAAGTCTCTAGGCTCTGGAGGCGGGCTTGAAAAAGAACCAATTGTTGAACCAGAGGATTTGATGACCATAGATATAGAAAATGCTGATAGTTGGGACCGCACAGAAAGAGAAAGGGATATACGCCAAGGAATTGACCTAGCAACCACATTGGAACGCATTGAAAAGAACTTTGTGATTTCTGATCCTAGAATTCCTGATAATCCAATTATATTTGCATCTGATAGTTTTCTAGAACTGACGGAATATACACGTGAGGAAATTCTGGGGAGAAATTGTCGTTTTCTTCAAGGTCCTGAAACAGATCAAGCAACAGTCTCAAAAATAAGAGATGCCATCAGAGAACAACGGGAAATTACTGTACAGTTAATCAACTATACTAAGAGTGGAAAGAAGTTTTGGAATTTGTTCCACTTGCAACCCATGCGTGACCATAAGGGTGAACTTCAATATTTCATTGGTGTCCAATTGGATGGTAGTGATCATGTAGAACCTCTGCGAAATCGCCTGTCAGAGAGAGCAGAGCTAGAAAGTTCTAAAGTGGTGAAAGCCACTGCAGAAAATGTTAACGAGGCTGTCCGAGAACTTCCTGATGCCAACTTGAGACCAGAAGATCTGTGGGCAATTCATTCTCGTCCTGTCTTCCCAAGACCTCACAAAAGGGGTAGTGCTAGTTGGTTAGCAATACAAGAGATTACTTCACGTGGTGAAAAAATTGATCTGCATCATTTTAAGCCCATAAAACCCTTGGGTTGTGGTGATACTGGCAGTGTCCATTTGGTGGAACTACGAGGTACTTCTATACTGTTTGCTATGAAGGCAATGGAGAAGTCAATAATGTTGAATCGTAACAAGGTTCACCGAGCATGCGCTGAACGGGAAATAATTTCACAACTGGATCATCCATTTCTTCCTACGCTATACACTTCATTTGAGACTTCTACACACGTTTGTTTGATAACAGACTTTTGCTCGGGCGGAGAGTTATTTGCTTTGCTTGATAAGCAGCCTATGAAATTCTTCAAGGAGGACTCCGCTAGGTTCTATGCTGCAGAGGTTGTCATTGCTTTGGAATATCTTCACTGTCTAGGAATAATTTATCGCGACCTTAAGCCTGAGAATATTTTACTCCAGAAGGATGGACATATTGTCTTAACAGACTTTGATTTATCATTTATGGCATCCTGTAAACCACAGATTATAAGGCATCAATCATCTAAGAAGAGAAGGAGATCTAGCAGTCAACCACCACCAACATTTGTTGCAGAACCAGTTAATCAATCAAATTCCTTCGTTGGAACCGAAGAGTACATTGCTCCTGAAATTGTTACCGGTACAGGCCACAGCAGTGCTATTGATTGGTGGGCTCTTGGTATTTTGTTGTATGAGATGCTATATGGCCGCACCCCTTTCAGGGGGAAAAACAGACAAAGAACATTCACCAACATTTTGCACAAAGATCTGACCTTTCCAAGTAGCATTCCGGTGAGCCTTGCAGCACGGCAGTTGATCAATGCGTTGTTGCAAAGAGACCCTGCCACACGTTTAGGATCCACTACTGGTGCAAACGAGATCAAACAACATCCTTTTTTCCGTGGAATTACTTGGCCTTTGATCCGTTGCATGAGCCCTCCACCGTTAGAGGTGCCTCTTCGGCCTATTGGTTTTGATCCACAGGCCAAGGATATATCGTGGGAAGACGATGGGGTTCTTGTAAATTCAATGGATATGGATATTTTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000166 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005773 GO:0005794 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006996 GO:0007154 GO:0007165 GO:0007623 GO:0008150 GO:0008152 GO:0009314 GO:0009416 GO:0009605 GO:0009606 GO:0009628 GO:0009637 GO:0009638 GO:0009657 GO:0009658 GO:0009719 GO:0009725 GO:0009735 GO:0009785 GO:0009881 GO:0009882 GO:0009898 GO:0009902 GO:0009903 GO:0009904 GO:0009986 GO:0009987 GO:0010033 GO:0010118 GO:0010119 GO:0010155 GO:0010181 GO:0010359 GO:0010360 GO:0010361 GO:0010362 GO:0012505 GO:0016020 GO:0016043 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0019750 GO:0022898 GO:0023052 GO:0030522 GO:0032409 GO:0032410 GO:0032412 GO:0032413 GO:0032553 GO:0032879 GO:0034762 GO:0034763 GO:0034765 GO:0034766 GO:0035556 GO:0036094 GO:0036211 GO:0038023 GO:0042221 GO:0042802 GO:0043167 GO:0043168 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043269 GO:0043271 GO:0043412 GO:0044070 GO:0044092 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044425 GO:0044444 GO:0044459 GO:0044464 GO:0046777 GO:0048037 GO:0048511 GO:0048519 GO:0050662 GO:0050789 GO:0050794 GO:0050896 GO:0051049 GO:0051051 GO:0051179 GO:0051234 GO:0051640 GO:0051641 GO:0051644 GO:0051649 GO:0051656 GO:0051667 GO:0051716 GO:0060089 GO:0065007 GO:0065009 GO:0071214 GO:0071478 GO:0071482 GO:0071483 GO:0071704 GO:0071840 GO:0071944 GO:0097159 GO:0097367 GO:0098552 GO:0098562 GO:0104004 GO:0140096 GO:1901265 GO:1901363 GO:1901564 GO:1903792 GO:1903959 GO:1903960 GO:1904062
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PAS_9 Pkinase

Protein Analysis

899

Amino Acids

100.47

Weight (kDa)

6.66

Isoelectric Point (pI)

43.7

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PAS_9 PF13426 136 - 200 2.8e-08 PAS domain
PAS_9 PF13426 385 - 477 5.1e-20 PAS domain
PAS_3 PF08447 389 - 474 1.7e-06 PAS fold
PAS PF00989 389 - 477 6e-07 PAS fold
Pkinase PF00069 565 - 850 1.6e-60 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 566 - 718 7.3e-17 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 2159
Acc36I ACCTGC 1 cut(s) 577
AccB1I GGYRCC 1 cut(s) 2602
AccB7I CCANNNNNTGG 1 cut(s) 1738
AccII CGCG 2 cut(s) 49, 2061
AciI CCGC 7 cut(s) 480, 863, 981, 1057, 1935, 1992, 2359
AclWI GGATC 7 cut(s) 106, 1136, 1863, 2502, 2515, 2566, 2621
AcoI YGGCCR 2 cut(s) 438, 2356
AcsI RAATTY 6 cut(s) 1149, 1218, 1360, 1973, 2242, 2674
AcuI CTGAAG 2 cut(s) 168, 392
AcvI CACGTG 2 cut(s) 1211, 1661
AdeI CACNNNGTG 1 cut(s) 1664
AfaI GTAC 9 cut(s) 72, 109, 605, 717, 838, 1320, 1753, 2267, 2293
AfiI CCNNNNNNNGG 7 cut(s) 315, 946, 947, 1738, 2370, 2371, 2372
AflII CTTAAG 1 cut(s) 2066
AflIII ACRYGT 3 cut(s) 1208, 1903, 2498
AgeI ACCGGT 1 cut(s) 2288
AhdI GACNNNNNGTC 1 cut(s) 2105
AjnI CCWGG 1 cut(s) 900
AjuI GAANNNNNNNTTGG 2 cut(s) 1339, 1371
AleI CACNNNNGTG 1 cut(s) 2304
AluBI AGCT 5 cut(s) 20, 88, 146, 474, 1483
AluI AGCT 5 cut(s) 20, 88, 146, 474, 1483
Alw26I GTCTC 5 cut(s) 969, 1279, 1555, 1886, 2481
AlwI GGATC 7 cut(s) 106, 1136, 1863, 2502, 2515, 2566, 2621
Ama87I CYCGRG 2 cut(s) 885, 1930
AoxI GGCC 8 cut(s) 306, 438, 635, 2296, 2356, 2564, 2612, 2634
ApoI RAATTY 6 cut(s) 1149, 1218, 1360, 1973, 2242, 2674
AsiGI ACCGGT 1 cut(s) 2288
Asp700I GAANNNNTTC 3 cut(s) 1364, 1976, 2034
AspLEI GCGC 2 cut(s) 49, 1829
AspS9I GGNCC 3 cut(s) 413, 1054, 1250
AsuNHI GCTAGC 1 cut(s) 755
AvaI CYCGRG 2 cut(s) 885, 1930
AvaII GGWCC 3 cut(s) 413, 1054, 1250
BalI TGGCCA 1 cut(s) 440
BamHI GGATCC 1 cut(s) 2507
BanI GGYRCC 1 cut(s) 2602
BanII GRGCYC 2 cut(s) 2326, 2588
BbrPI CACGTG 2 cut(s) 1211, 1661
BbsI GAAGAC 2 cut(s) 1591, 2661
BccI CCATC 9 cut(s) 118, 191, 323, 500, 575, 1301, 1424, 2090, 2654
BceAI ACGGC 2 cut(s) 293, 2474
BciT130I CCWGG 1 cut(s) 902
BclI TGATCA 2 cut(s) 1438, 2466
BcoDI GTCTC 5 cut(s) 969, 1279, 1555, 1886, 2481
BfmI CTRYAG 2 cut(s) 1512, 2007
BfrI CTTAAG 1 cut(s) 2066
BfuAI ACCTGC 1 cut(s) 577
BglI GCCNNNNNGGC 1 cut(s) 2611
BglII AGATCT 3 cut(s) 1570, 2189, 2416
BmcAI AGTACT 1 cut(s) 109
Bme1390I CCNGG 1 cut(s) 902
Bme18I GGWCC 3 cut(s) 413, 1054, 1250
BmeRI GACNNNNNGTC 1 cut(s) 2105
BmeT110I CYCGRG 2 cut(s) 885, 1930
BmgT120I GGNCC 3 cut(s) 413, 1054, 1250
BmiI GGNNCC 6 cut(s) 414, 700, 1055, 2257, 2509, 2604
BmrFI CCNGG 1 cut(s) 902
BmrI ACTGGG 1 cut(s) 474
BmtI GCTAGC 1 cut(s) 759
BmuI ACTGGG 1 cut(s) 474
BpiI GAAGAC 2 cut(s) 1591, 2661
BpmI CTGGAG 2 cut(s) 996, 2072
BpuEI CTTGAG 1 cut(s) 1579
BsaAI YACGTR 2 cut(s) 1211, 1661
BsaBI GATNNNNATC 3 cut(s) 364, 955, 1680
BsaI GGTCTC 2 cut(s) 1555, 2481
BsaJI CCNNGG 5 cut(s) 900, 1084, 1704, 2551, 2637
BsaWI WCCGGW 3 cut(s) 415, 2288, 2440
BsaXI ACNNNNNCTCC 4 cut(s) 255, 285, 1219, 1249
Bsc4I CCNNNNNNNGG 7 cut(s) 315, 946, 947, 1738, 2370, 2371, 2372
Bse118I RCCGGY 1 cut(s) 2288
Bse1I ACTGG 5 cut(s) 469, 1726, 1857, 2228, 2521
Bse3DI GCAATG 6 cut(s) 64, 766, 837, 1785, 2019, 2268
Bse8I GATNNNNATC 3 cut(s) 364, 955, 1680
BseBI CCWGG 1 cut(s) 902
BseDI CCNNGG 5 cut(s) 900, 1084, 1704, 2551, 2637
BseJI GATNNNNATC 3 cut(s) 364, 955, 1680
BseLI CCNNNNNNNGG 7 cut(s) 315, 946, 947, 1738, 2370, 2371, 2372
BseMI GCAATG 6 cut(s) 64, 766, 837, 1785, 2019, 2268
BseMII CTCAG 2 cut(s) 872, 2064
BseNI ACTGG 5 cut(s) 469, 1726, 1857, 2228, 2521
Bsh1236I CGCG 2 cut(s) 49, 2061
BshFI GGCC 8 cut(s) 308, 440, 637, 2298, 2358, 2566, 2614, 2636
BshNI GGYRCC 1 cut(s) 2602
BshTI ACCGGT 1 cut(s) 2288
BsiHKCI CYCGRG 2 cut(s) 885, 1930
BsiSI CCGG 5 cut(s) 278, 416, 788, 2289, 2441
BslFI GGGAC 2 cut(s) 426, 1067
BslI CCNNNNNNNGG 7 cut(s) 315, 946, 947, 1738, 2370, 2371, 2372
BsmAI GTCTC 5 cut(s) 969, 1279, 1555, 1886, 2481
BsmFI GGGAC 2 cut(s) 426, 1067
BsmI GAATGC 3 cut(s) 128, 588, 2436
BsnI GGCC 8 cut(s) 308, 440, 637, 2298, 2358, 2566, 2614, 2636
Bso31I GGTCTC 2 cut(s) 1555, 2481
BsoBI CYCGRG 2 cut(s) 885, 1930
Bsp1286I GDGCHC 2 cut(s) 2326, 2588
Bsp1407I TGTACA 2 cut(s) 715, 1318
Bsp68I TCGCGA 1 cut(s) 2061
BspACI CCGC 7 cut(s) 480, 863, 981, 1057, 1935, 1992, 2359
BspANI GGCC 8 cut(s) 308, 440, 637, 2298, 2358, 2566, 2614, 2636
BspCNI CTCAG 2 cut(s) 871, 2065
BspFNI CGCG 2 cut(s) 49, 2061
BspHI TCATGA 1 cut(s) 778
BspLI GGNNCC 6 cut(s) 414, 700, 1055, 2257, 2509, 2604
BspMAI CTGCAG 2 cut(s) 1516, 2011
BspMI ACCTGC 1 cut(s) 577
BspOI GCTAGC 1 cut(s) 759
BspPI GGATC 7 cut(s) 106, 1136, 1863, 2502, 2515, 2566, 2621
BspQI GCTCTTC 2 cut(s) 494, 777
BspT107I GGYRCC 1 cut(s) 2602
BspTI CTTAAG 1 cut(s) 2066
BspTNI GGTCTC 2 cut(s) 1555, 2481
BsrDI GCAATG 6 cut(s) 64, 766, 837, 1785, 2019, 2268
BsrFI RCCGGY 1 cut(s) 2288
BsrGI TGTACA 2 cut(s) 715, 1318
BsrI ACTGG 5 cut(s) 469, 1726, 1857, 2228, 2521
BssAI RCCGGY 1 cut(s) 2288
BssECI CCNNGG 5 cut(s) 900, 1084, 1704, 2551, 2637
BssT1I CCWWGG 3 cut(s) 1084, 1704, 2637
Bst2UI CCWGG 1 cut(s) 902
Bst4CI ACNGT 8 cut(s) 535, 724, 1273, 1318, 1323, 1764, 2042, 2595
Bst6I CTCTTC 6 cut(s) 144, 494, 777, 2174, 2256, 2613
BstAFI CTTAAG 1 cut(s) 2066
BstAPI GCANNNNNTGC 1 cut(s) 1381
BstAUI TGTACA 2 cut(s) 715, 1318
BstBAI YACGTR 2 cut(s) 1211, 1661
BstC8I GCNNGC 5 cut(s) 235, 757, 910, 983, 1825
BstDEI CTNAG 4 cut(s) 858, 1338, 2073, 2175
BstDSI CCRYGG 1 cut(s) 2551
BstFNI CGCG 2 cut(s) 49, 2061
BstHHI GCGC 2 cut(s) 49, 1829
BstMAI GTCTC 5 cut(s) 969, 1279, 1555, 1886, 2481
BstNI CCWGG 1 cut(s) 902
BstNSI RCATGY 2 cut(s) 748, 1827
BstSCI CCNGG 1 cut(s) 900
BstSFI CTRYAG 2 cut(s) 1512, 2007
BstUI CGCG 2 cut(s) 49, 2061
BstV2I GAAGAC 2 cut(s) 1591, 2661
BstX2I RGATCY 4 cut(s) 1570, 2189, 2416, 2507
BstXI CCANNNNNNTGG 2 cut(s) 1430, 2096
BstYI RGATCY 4 cut(s) 1570, 2189, 2416, 2507
BsuRI GGCC 8 cut(s) 308, 440, 637, 2298, 2358, 2566, 2614, 2636
BtgI CCRYGG 1 cut(s) 2551
BtsI GCAGTG 4 cut(s) 162, 1509, 1732, 2311
BtsIMutI CAGTG 5 cut(s) 162, 1509, 1732, 2038, 2311
BtuMI TCGCGA 1 cut(s) 2061
BveI ACCTGC 1 cut(s) 577
Cac8I GCNNGC 5 cut(s) 235, 757, 910, 983, 1825
CciI TCATGA 1 cut(s) 778
CfoI GCGC 2 cut(s) 49, 1829
Cfr10I RCCGGY 1 cut(s) 2288
Cfr13I GGNCC 3 cut(s) 413, 1054, 1250
CseI GACGC 1 cut(s) 680
Csp6I GTAC 9 cut(s) 71, 108, 604, 716, 837, 1319, 1752, 2266, 2292
CspAI ACCGGT 1 cut(s) 2288
CviAII CATG 8 cut(s) 395, 745, 779, 796, 1381, 1442, 1824, 2581
CviQI GTAC 9 cut(s) 71, 108, 604, 716, 837, 1319, 1752, 2266, 2292
DdeI CTNAG 4 cut(s) 858, 1338, 2073, 2175
DraIII CACNNNGTG 1 cut(s) 1664
DriI GACNNNNNGTC 1 cut(s) 2105
EaeI YGGCCR 2 cut(s) 438, 2356
Eam1104I CTCTTC 6 cut(s) 144, 494, 777, 2174, 2256, 2613
Eam1105I GACNNNNNGTC 1 cut(s) 2105
EarI CTCTTC 6 cut(s) 144, 494, 777, 2174, 2256, 2613
EciI GGCGGA 2 cut(s) 878, 1950
Eco130I CCWWGG 3 cut(s) 1084, 1704, 2637
Eco24I GRGCYC 2 cut(s) 2326, 2588
Eco31I GGTCTC 2 cut(s) 1555, 2481
Eco47I GGWCC 3 cut(s) 413, 1054, 1250
Eco57I CTGAAG 2 cut(s) 168, 392
Eco72I CACGTG 2 cut(s) 1211, 1661
Eco88I CYCGRG 2 cut(s) 885, 1930
EcoO109I RGGNCCY 1 cut(s) 1250
EcoRI GAATTC 1 cut(s) 1149
EcoRII CCWGG 1 cut(s) 900
EcoT14I CCWWGG 3 cut(s) 1084, 1704, 2637
EcoT38I GRGCYC 2 cut(s) 2326, 2588
ErhI CCWWGG 3 cut(s) 1084, 1704, 2637
FaeI CATG 8 cut(s) 398, 748, 782, 799, 1384, 1445, 1827, 2584
FalI AAGNNNNNCTT 2 cut(s) 838, 870
FaqI GGGAC 2 cut(s) 426, 1067
FatI CATG 8 cut(s) 394, 744, 778, 795, 1380, 1441, 1823, 2580
FauI CCCGC 1 cut(s) 974
FbaI TGATCA 2 cut(s) 1438, 2466
FriOI GRGCYC 2 cut(s) 2326, 2588
GlaI GCGC 2 cut(s) 48, 1828
GsuI CTGGAG 2 cut(s) 996, 2072
HaeIII GGCC 8 cut(s) 308, 440, 637, 2298, 2358, 2566, 2614, 2636
HapII CCGG 5 cut(s) 278, 416, 788, 2289, 2441
HgaI GACGC 1 cut(s) 680
HhaI GCGC 2 cut(s) 49, 1829
Hin1II CATG 8 cut(s) 398, 748, 782, 799, 1384, 1445, 1827, 2584
Hin6I GCGC 2 cut(s) 47, 1827
HinP1I GCGC 2 cut(s) 47, 1827
HincII GTYRAC 2 cut(s) 1525, 2201
HindII GTYRAC 2 cut(s) 1525, 2201
HinfI GANTC 8 cut(s) 152, 209, 284, 365, 386, 523, 1801, 1988
HpaI GTTAAC 1 cut(s) 1525
HpaII CCGG 5 cut(s) 278, 416, 788, 2289, 2441
Hpy166II GTNNAC 6 cut(s) 606, 1400, 1525, 1816, 2147, 2201
Hpy188III TCNNGA 9 cut(s) 779, 975, 1154, 1190, 1253, 1547, 2060, 2089, 2276
Hpy8I GTNNAC 6 cut(s) 606, 1400, 1525, 1816, 2147, 2201
Hpy99I CGWCG 1 cut(s) 674
HpyCH4III ACNGT 8 cut(s) 535, 724, 1273, 1318, 1323, 1764, 2042, 2595
HpyCH4IV ACGT 6 cut(s) 192, 736, 1210, 1660, 1905, 2500
HpyF3I CTNAG 4 cut(s) 858, 1338, 2073, 2175
HpySE526I ACGT 6 cut(s) 192, 736, 1210, 1660, 1905, 2500
Hsp92II CATG 8 cut(s) 398, 748, 782, 799, 1384, 1445, 1827, 2584
HspAI GCGC 2 cut(s) 47, 1827
Ksp22I TGATCA 2 cut(s) 1438, 2466
KspAI GTTAAC 1 cut(s) 1525
LguI GCTCTTC 2 cut(s) 494, 777
LmnI GCTCC 2 cut(s) 704, 2278
MaeII ACGT 6 cut(s) 192, 736, 1210, 1660, 1905, 2500
MaeIII GTNAC 7 cut(s) 188, 535, 654, 665, 1385, 1805, 2284
MfeI CAATTG 2 cut(s) 999, 1424
MflI RGATCY 4 cut(s) 1570, 2189, 2416, 2507
MhlI GDGCHC 2 cut(s) 2326, 2588
MlsI TGGCCA 1 cut(s) 440
MluNI TGGCCA 1 cut(s) 440
MlyI GAGTC 4 cut(s) 161, 203, 395, 1982
MmeI TCCRAC 2 cut(s) 46, 2233
Mox20I TGGCCA 1 cut(s) 440
MroXI GAANNNNTTC 3 cut(s) 1364, 1976, 2034
MscI TGGCCA 1 cut(s) 440
MseI TTAA 9 cut(s) 117, 303, 804, 1325, 1524, 1689, 2067, 2111, 2232
MslI CAYNNNNRTG 5 cut(s) 118, 581, 1395, 2304, 2441
Msp20I TGGCCA 1 cut(s) 440
MspA1I CMGCKG 2 cut(s) 20, 146
MspCI CTTAAG 1 cut(s) 2066
MspI CCGG 5 cut(s) 278, 416, 788, 2289, 2441
MspR9I CCNGG 1 cut(s) 902
MunI CAATTG 2 cut(s) 999, 1424
Mva1269I GAATGC 3 cut(s) 128, 588, 2436
MvaI CCWGG 1 cut(s) 902
MvnI CGCG 2 cut(s) 49, 2061
NheI GCTAGC 1 cut(s) 755
NlaIII CATG 8 cut(s) 398, 748, 782, 799, 1384, 1445, 1827, 2584
NlaIV GGNNCC 6 cut(s) 414, 700, 1055, 2257, 2509, 2604
NmuCI GTSAC 4 cut(s) 188, 535, 654, 1385
NruI TCGCGA 1 cut(s) 2061
NspI RCATGY 2 cut(s) 748, 1827
OliI CACNNNNGTG 1 cut(s) 2304
PaeI GCATGC 1 cut(s) 1827
PaeR7I CTCGAG 1 cut(s) 885
PagI TCATGA 1 cut(s) 778
PciSI GCTCTTC 2 cut(s) 494, 777
PcsI WCGNNNNNNNCGW 2 cut(s) 230, 2256
PctI GAATGC 3 cut(s) 128, 588, 2436
PdmI GAANNNNTTC 3 cut(s) 1364, 1976, 2034
PfeI GAWTC 4 cut(s) 284, 365, 523, 1801
PflMI CCANNNNNTGG 1 cut(s) 1738
PinAI ACCGGT 1 cut(s) 2288
PleI GAGTC 4 cut(s) 160, 203, 394, 1982
PmaCI CACGTG 2 cut(s) 1211, 1661
PmlI CACGTG 2 cut(s) 1211, 1661
PpsI GAGTC 4 cut(s) 160, 203, 394, 1982
Ppu21I YACGTR 2 cut(s) 1211, 1661
PpuMI RGGWCCY 1 cut(s) 1250
PsiI TTATAA 1 cut(s) 2159
Psp5II RGGWCCY 1 cut(s) 1250
Psp6I CCWGG 1 cut(s) 900
PspCI CACGTG 2 cut(s) 1211, 1661
PspGI CCWGG 1 cut(s) 900
PspN4I GGNNCC 6 cut(s) 414, 700, 1055, 2257, 2509, 2604
PspPI GGNCC 3 cut(s) 413, 1054, 1250
PspPPI RGGWCCY 1 cut(s) 1250
PspXI VCTCGAGB 1 cut(s) 885
PstI CTGCAG 2 cut(s) 1516, 2011
PsuI RGATCY 4 cut(s) 1570, 2189, 2416, 2507
PvuII CAGCTG 2 cut(s) 20, 146
RruI TCGCGA 1 cut(s) 2061
RsaI GTAC 9 cut(s) 72, 109, 605, 717, 838, 1320, 1753, 2267, 2293
RsaNI GTAC 9 cut(s) 71, 108, 604, 716, 837, 1319, 1752, 2266, 2292
RseI CAYNNNNRTG 5 cut(s) 118, 581, 1395, 2304, 2441
SapI GCTCTTC 2 cut(s) 494, 777
SaqAI TTAA 9 cut(s) 117, 303, 804, 1325, 1524, 1689, 2067, 2111, 2232
Sau96I GGNCC 3 cut(s) 413, 1054, 1250
ScaI AGTACT 1 cut(s) 109
SchI GAGTC 4 cut(s) 161, 203, 395, 1982
ScrFI CCNGG 1 cut(s) 902
SduI GDGCHC 2 cut(s) 2326, 2588
SfcI CTRYAG 2 cut(s) 1512, 2007
Sfr274I CTCGAG 1 cut(s) 885
SinI GGWCC 3 cut(s) 413, 1054, 1250
SlaI CTCGAG 1 cut(s) 885
SmiMI CAYNNNNRTG 5 cut(s) 118, 581, 1395, 2304, 2441
SmlI CTYRAG 3 cut(s) 885, 1558, 2066
SmoI CTYRAG 3 cut(s) 885, 1558, 2066
SphI GCATGC 1 cut(s) 1827
SsiI CCGC 7 cut(s) 480, 863, 981, 1057, 1935, 1992, 2359
SspI AATATT 2 cut(s) 1409, 2080
StyD4I CCNGG 1 cut(s) 900
StyI CCWWGG 3 cut(s) 1084, 1704, 2637
TaaI ACNGT 8 cut(s) 535, 724, 1273, 1318, 1323, 1764, 2042, 2595
TaiI ACGT 6 cut(s) 195, 739, 1213, 1663, 1908, 2503
TaqI TCGA 3 cut(s) 132, 676, 886
TatI WGTACW 7 cut(s) 70, 107, 603, 715, 836, 1318, 2265
TauI GCSGC 1 cut(s) 2361
TfiI GAWTC 4 cut(s) 284, 365, 523, 1801
Tru1I TTAA 9 cut(s) 117, 303, 804, 1325, 1524, 1689, 2067, 2111, 2232
Tru9I TTAA 9 cut(s) 117, 303, 804, 1325, 1524, 1689, 2067, 2111, 2232
TscAI CASTG 5 cut(s) 169, 1516, 1732, 2045, 2311
TseFI GTSAC 4 cut(s) 188, 535, 654, 1385
Tsp45I GTSAC 4 cut(s) 188, 535, 654, 1385
TspGWI ACGGA 5 cut(s) 239, 653, 1214, 2540, 2564
TspRI CASTG 5 cut(s) 169, 1516, 1732, 2045, 2311
Van91I CCANNNNNTGG 1 cut(s) 1738
Vha464I CTTAAG 1 cut(s) 2066
VpaK11BI GGWCC 3 cut(s) 413, 1054, 1250
XapI RAATTY 6 cut(s) 1149, 1218, 1360, 1973, 2242, 2674
XbaI TCTAGA 1 cut(s) 1189
XceI RCATGY 2 cut(s) 748, 1827
XcmI CCANNNNNNNNNTGG 2 cut(s) 1572, 1702
XhoI CTCGAG 1 cut(s) 885
XmnI GAANNNNTTC 3 cut(s) 1364, 1976, 2034
ZrmI AGTACT 1 cut(s) 109
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.