Rorug06G0142600

Phototropin-2-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0004987
Physical Location & Seq
Reverse (-)
20278025 .. 20279198
1174 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0142600.1

Sequence Viewer

Length: 834 bp
ATGAGAGGATACACGTACGATGTCTTTTTGAGTTTTAGAGGCGAGGACACACGCGATAATTTTACAGACCATTTGTACAGCGCTCTGTGTCGAAAGGGAATTAAAACCTTCATAGACAATAAGCTTGACAGGGGAGAAGAAATATCAGACGCACTTCTAAAAGCAATTGAAGAGTCAAGGATCTCTATTGTCGTATTCTCTAAAACTTATGCCTCTTCGAAGTGGTGTTTGGATGAACTCGTGAAGATTCTTCAATGTAAAAAGTCAAAGAATCAGATGGTTAGACCCGTTTTCTACAAGGTGGATCCCTCAAATGTACGGAACCAAAGTGGTAGTTTTGGTGAAGCGCTTGCTCAACATGAGAGGAGATTCAACAATAAAACGGAGAGGGTCTTGTCGTGGATAAGGAATTTGCTGAACTGGTCGTTGAGTTATGATGACAGCGAATTCAAGCATAACATGAAGAAGCTGAATAAATGGACCAAAGCTCTCAAGGAAGCGGCCGACTTGTCTGGATGGACTTACTCGAATGGGTCTGAATCAAAATTTATCGATAACATTGTTGAAGAAATTTCAGAACAAATTTTACGTCATAGCAATTTTAATGTGGCTGATCATCCAGTTGGAATACATTCTCGAGTACGAGATATCACTATGTCAAAAAGGCCTTCAGACGACAGAACTGTTCTGTCGTCTGAACGAACAAAAATGTGTCGTCTAGTACGATGTCGTGTCTTGGGCGTATCGAACGACAGAAGAGTTCTGTCGTCTGAGAATTCAGACGACATAAAAAATGTGTCGTCTGATGAGTTTTGCATTTTGGGAACATTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000166 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005773 GO:0005794 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006996 GO:0007154 GO:0007165 GO:0007623 GO:0008150 GO:0008152 GO:0009314 GO:0009416 GO:0009605 GO:0009606 GO:0009628 GO:0009637 GO:0009638 GO:0009657 GO:0009658 GO:0009719 GO:0009725 GO:0009735 GO:0009785 GO:0009881 GO:0009882 GO:0009898 GO:0009902 GO:0009903 GO:0009904 GO:0009986 GO:0009987 GO:0010033 GO:0010118 GO:0010119 GO:0010155 GO:0010181 GO:0010359 GO:0010360 GO:0010361 GO:0010362 GO:0012505 GO:0016020 GO:0016043 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0019750 GO:0022898 GO:0023052 GO:0030522 GO:0032409 GO:0032410 GO:0032412 GO:0032413 GO:0032553 GO:0032879 GO:0034762 GO:0034763 GO:0034765 GO:0034766 GO:0035556 GO:0036094 GO:0036211 GO:0038023 GO:0042221 GO:0042802 GO:0043167 GO:0043168 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043269 GO:0043271 GO:0043412 GO:0044070 GO:0044092 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044425 GO:0044444 GO:0044459 GO:0044464 GO:0046777 GO:0048037 GO:0048511 GO:0048519 GO:0050662 GO:0050789 GO:0050794 GO:0050896 GO:0051049 GO:0051051 GO:0051179 GO:0051234 GO:0051640 GO:0051641 GO:0051644 GO:0051649 GO:0051656 GO:0051667 GO:0051716 GO:0060089 GO:0065007 GO:0065009 GO:0071214 GO:0071478 GO:0071482 GO:0071483 GO:0071704 GO:0071840 GO:0071944 GO:0097159 GO:0097367 GO:0098552 GO:0098562 GO:0104004 GO:0140096 GO:1901265 GO:1901363 GO:1901564 GO:1903792 GO:1903959 GO:1903960 GO:1904062
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PAS_9 Pkinase

Protein Analysis

277

Amino Acids

32.03

Weight (kDa)

8.93

Isoelectric Point (pI)

44.06

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TIR PF01582 6 - 140 2.6e-52 TIR domain
TIR_2 PF13676 8 - 103 2.2e-16 TIR domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 54
AciI CCGC 1 cut(s) 500
AclWI GGATC 3 cut(s) 188, 299, 312
AcoI YGGCCR 1 cut(s) 501
AcsI RAATTY 6 cut(s) 409, 446, 545, 570, 582, 775
AcuI CTGAAG 1 cut(s) 654
AfaI GTAC 5 cut(s) 17, 77, 318, 642, 723
AfeI AGCGCT 2 cut(s) 82, 348
AflIII ACRYGT 1 cut(s) 12
AgsI TTSAA 5 cut(s) 170, 254, 373, 451, 566
AjuI GAANNNNNNNTTGG 2 cut(s) 212, 244
AluBI AGCT 3 cut(s) 124, 469, 488
AluI AGCT 3 cut(s) 124, 469, 488
AlwI GGATC 3 cut(s) 188, 299, 312
Ama87I CYCGRG 1 cut(s) 636
Aor51HI AGCGCT 2 cut(s) 82, 348
AoxI GGCC 2 cut(s) 501, 665
ApoI RAATTY 6 cut(s) 409, 446, 545, 570, 582, 775
ArsI GACNNNNNNTTYG 2 cut(s) 574, 606
Asp700I GAANNNNTTC 1 cut(s) 631
AspLEI GCGC 2 cut(s) 83, 349
AspS9I GGNCC 1 cut(s) 480
AsuHPI GGTGA 1 cut(s) 353
AsuII TTCGAA 1 cut(s) 218
AvaI CYCGRG 1 cut(s) 636
AvaII GGWCC 1 cut(s) 480
BamHI GGATCC 1 cut(s) 304
BauI CACGAG 1 cut(s) 239
BccI CCATC 2 cut(s) 271, 510
BclI TGATCA 1 cut(s) 613
BfaI CTAG 1 cut(s) 719
BfoI RGCGCY 2 cut(s) 84, 350
BisI GCNGC 1 cut(s) 501
BlsI GCNGC 1 cut(s) 502
Bme18I GGWCC 1 cut(s) 480
BmeT110I CYCGRG 1 cut(s) 636
BmgT120I GGNCC 1 cut(s) 480
BmiI GGNNCC 2 cut(s) 306, 323
Bpu14I TTCGAA 1 cut(s) 218
BpuEI CTTGAG 1 cut(s) 476
Bsa29I ATCGAT 1 cut(s) 552
BsaAI YACGTR 1 cut(s) 15
Bse1I ACTGG 2 cut(s) 425, 620
BseCI ATCGAT 1 cut(s) 552
BseGI GGATG 3 cut(s) 238, 521, 616
BseMII CTCAG 1 cut(s) 762
BseNI ACTGG 2 cut(s) 425, 620
BseRI GAGGAG 1 cut(s) 379
BseX3I CGGCCG 1 cut(s) 501
Bsh1236I CGCG 1 cut(s) 54
Bsh1285I CGRYCG 1 cut(s) 504
BshFI GGCC 2 cut(s) 503, 667
BshVI ATCGAT 1 cut(s) 552
BsiEI CGRYCG 1 cut(s) 504
BsiHKCI CYCGRG 1 cut(s) 636
BsiWI CGTACG 1 cut(s) 15
BsnI GGCC 2 cut(s) 503, 667
BsoBI CYCGRG 1 cut(s) 636
Bsp119I TTCGAA 1 cut(s) 218
Bsp1407I TGTACA 1 cut(s) 75
Bsp143I GATC 3 cut(s) 180, 304, 613
BspACI CCGC 1 cut(s) 500
BspANI GGCC 2 cut(s) 503, 667
BspCNI CTCAG 1 cut(s) 763
BspDI ATCGAT 1 cut(s) 552
BspFNI CGCG 1 cut(s) 54
BspLI GGNNCC 2 cut(s) 306, 323
BspPI GGATC 3 cut(s) 188, 299, 312
BspT104I TTCGAA 1 cut(s) 218
BsrGI TGTACA 1 cut(s) 75
BsrI ACTGG 2 cut(s) 425, 620
BssMI GATC 3 cut(s) 180, 304, 613
BssSI CACGAG 1 cut(s) 239
Bst2BI CACGAG 1 cut(s) 239
Bst4CI ACNGT 1 cut(s) 685
Bst6I CTCTTC 3 cut(s) 165, 220, 751
BstAUI TGTACA 1 cut(s) 75
BstBAI YACGTR 1 cut(s) 15
BstBI TTCGAA 1 cut(s) 218
BstC8I GCNNGC 1 cut(s) 351
BstDEI CTNAG 1 cut(s) 771
BstF5I GGATG 3 cut(s) 238, 521, 616
BstFNI CGCG 1 cut(s) 54
BstH2I RGCGCY 2 cut(s) 84, 350
BstHHI GCGC 2 cut(s) 83, 349
BstKTI GATC 3 cut(s) 183, 307, 616
BstMBI GATC 3 cut(s) 180, 304, 613
BstMCI CGRYCG 1 cut(s) 504
BstUI CGCG 1 cut(s) 54
BstX2I RGATCY 2 cut(s) 180, 304
BstYI RGATCY 2 cut(s) 180, 304
BstZI CGGCCG 1 cut(s) 501
Bsu15I ATCGAT 1 cut(s) 552
BsuRI GGCC 2 cut(s) 503, 667
BsuTUI ATCGAT 1 cut(s) 552
BtsCI GGATG 3 cut(s) 238, 521, 616
Cac8I GCNNGC 1 cut(s) 351
CfoI GCGC 2 cut(s) 83, 349
Cfr13I GGNCC 1 cut(s) 480
ClaI ATCGAT 1 cut(s) 552
CseI GACGC 1 cut(s) 158
Csp6I GTAC 5 cut(s) 16, 76, 317, 641, 722
CviAII CATG 2 cut(s) 359, 460
CviJI RGCY 6 cut(s) 124, 469, 488, 503, 611, 667
CviKI_1 RGCY 6 cut(s) 124, 469, 488, 503, 611, 667
CviQI GTAC 5 cut(s) 16, 76, 317, 641, 722
DdeI CTNAG 1 cut(s) 771
DpnI GATC 3 cut(s) 182, 306, 615
DpnII GATC 3 cut(s) 180, 304, 613
EaeI YGGCCR 1 cut(s) 501
EagI CGGCCG 1 cut(s) 501
Eam1104I CTCTTC 3 cut(s) 165, 220, 751
EarI CTCTTC 3 cut(s) 165, 220, 751
EclXI CGGCCG 1 cut(s) 501
Eco147I AGGCCT 1 cut(s) 667
Eco32I GATATC 1 cut(s) 649
Eco47I GGWCC 1 cut(s) 480
Eco47III AGCGCT 2 cut(s) 82, 348
Eco52I CGGCCG 1 cut(s) 501
Eco57I CTGAAG 1 cut(s) 654
Eco88I CYCGRG 1 cut(s) 636
EcoRI GAATTC 2 cut(s) 446, 775
EcoRV GATATC 1 cut(s) 649
FaeI CATG 2 cut(s) 362, 463
FaiI YATR 9 cut(s) 113, 210, 360, 435, 456, 461, 594, 656, 788
FatI CATG 2 cut(s) 358, 459
FbaI TGATCA 1 cut(s) 613
Fnu4HI GCNGC 1 cut(s) 501
FokI GGATG 3 cut(s) 245, 528, 603
Fsp4HI GCNGC 1 cut(s) 501
FspBI CTAG 1 cut(s) 719
GlaI GCGC 2 cut(s) 82, 348
GluI GCNGC 1 cut(s) 501
HaeII RGCGCY 2 cut(s) 84, 350
HaeIII GGCC 2 cut(s) 503, 667
HgaI GACGC 1 cut(s) 158
HhaI GCGC 2 cut(s) 83, 349
Hin1II CATG 2 cut(s) 362, 463
Hin6I GCGC 2 cut(s) 81, 347
HinP1I GCGC 2 cut(s) 81, 347
HindIII AAGCTT 1 cut(s) 122
HinfI GANTC 5 cut(s) 173, 247, 271, 369, 539
HphI GGTGA 1 cut(s) 353
Hpy188I TCNGA 9 cut(s) 148, 276, 538, 577, 673, 697, 772, 781, 805
Hpy188III TCNNGA 3 cut(s) 241, 513, 636
HpyAV CCTTC 2 cut(s) 118, 678
HpyCH4III ACNGT 1 cut(s) 685
HpyCH4IV ACGT 2 cut(s) 14, 589
HpyCH4V TGCA 1 cut(s) 816
HpyF3I CTNAG 1 cut(s) 771
HpySE526I ACGT 2 cut(s) 14, 589
Hsp92II CATG 2 cut(s) 362, 463
HspAI GCGC 2 cut(s) 81, 347
Ksp22I TGATCA 1 cut(s) 613
Kzo9I GATC 3 cut(s) 180, 304, 613
LpnPI CCDG 4 cut(s) 115, 406, 498, 633
MaeI CTAG 1 cut(s) 719
MaeII ACGT 2 cut(s) 14, 589
MalI GATC 3 cut(s) 182, 306, 615
MboI GATC 3 cut(s) 180, 304, 613
MboII GAAGA 8 cut(s) 149, 182, 207, 242, 256, 475, 578, 768
MfeI CAATTG 1 cut(s) 165
MflI RGATCY 2 cut(s) 180, 304
MlyI GAGTC 1 cut(s) 182
MmeI TCCRAC 1 cut(s) 604
MnlI CCTC 6 cut(s) 32, 37, 223, 319, 357, 381
MroXI GAANNNNTTC 1 cut(s) 631
MseI TTAA 2 cut(s) 102, 603
MunI CAATTG 1 cut(s) 165
MvnI CGCG 1 cut(s) 54
NdeII GATC 3 cut(s) 180, 304, 613
NlaIII CATG 2 cut(s) 362, 463
NlaIV GGNNCC 2 cut(s) 306, 323
NspV TTCGAA 1 cut(s) 218
PaeR7I CTCGAG 1 cut(s) 636
PceI AGGCCT 1 cut(s) 667
PcsI WCGNNNNNNNCGW 1 cut(s) 721
PdmI GAANNNNTTC 1 cut(s) 631
PfeI GAWTC 4 cut(s) 247, 271, 369, 539
Pfl23II CGTACG 1 cut(s) 15
PkrI GCNGC 1 cut(s) 502
PleI GAGTC 1 cut(s) 181
PpsI GAGTC 1 cut(s) 181
Ppu21I YACGTR 1 cut(s) 15
PspLI CGTACG 1 cut(s) 15
PspN4I GGNNCC 2 cut(s) 306, 323
PspPI GGNCC 1 cut(s) 480
PsrI GAACNNNNNNTAC 2 cut(s) 570, 602
PsuI RGATCY 2 cut(s) 180, 304
RsaI GTAC 5 cut(s) 17, 77, 318, 642, 723
RsaNI GTAC 5 cut(s) 16, 76, 317, 641, 722
SaqAI TTAA 2 cut(s) 102, 603
SatI GCNGC 1 cut(s) 501
Sau3AI GATC 3 cut(s) 180, 304, 613
Sau96I GGNCC 1 cut(s) 480
SchI GAGTC 1 cut(s) 182
SetI ASST 7 cut(s) 17, 110, 126, 303, 471, 490, 592
Sfr274I CTCGAG 1 cut(s) 636
SfuI TTCGAA 1 cut(s) 218
SinI GGWCC 1 cut(s) 480
SlaI CTCGAG 1 cut(s) 636
SmlI CTYRAG 2 cut(s) 491, 636
SmoI CTYRAG 2 cut(s) 491, 636
SseBI AGGCCT 1 cut(s) 667
SsiI CCGC 1 cut(s) 500
SspMI CTAG 1 cut(s) 719
StuI AGGCCT 1 cut(s) 667
TaaI ACNGT 1 cut(s) 685
TaiI ACGT 2 cut(s) 17, 592
TaqI TCGA 6 cut(s) 91, 218, 527, 552, 637, 746
TatI WGTACW 1 cut(s) 75
TauI GCSGC 1 cut(s) 503
TfiI GAWTC 4 cut(s) 247, 271, 369, 539
Tru1I TTAA 2 cut(s) 102, 603
Tru9I TTAA 2 cut(s) 102, 603
TspDTI ATGAA 3 cut(s) 100, 249, 476
TspGWI ACGGA 2 cut(s) 334, 398
VpaK11BI GGWCC 1 cut(s) 480
XapI RAATTY 6 cut(s) 409, 446, 545, 570, 582, 775
XhoI CTCGAG 1 cut(s) 636
XmnI GAANNNNTTC 1 cut(s) 631
XspI CTAG 1 cut(s) 719
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.