RLG00000012949

Phototropin-2-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0004987
Physical Location & Seq
Forward (+)
24240853 .. 24249677
8825 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000012949

Sequence Viewer

Length: 2880 bp
ATGGAGAAACCAGAGGCAGCTGGTGGAGATAAGCAGAAATCAGCAGCGCGAAAGAGCAATGATGTTGGAGTACATCCTAGTAGTAAGCTGGAAAGTGGATCATCAAGTACTTCATTTAAGTGGATGGCATTCGATACACAAGCAGCTGAAGAGTCTAACAACACTGCTGCTGCTGCTGCTGCTGCTTCTGGTGACGTTGATGGTATTTTAGACTCAAAAATCATAACGGAGAAGGCGACCATAGTGGCAAGGACAGCAGAATGGGGAGTTGTGGTGAAGCCGGATGATTCTGGTGAAGGGACTTTTAAGGCCATAGGGAGGTCATCAGATGATGGCAACAAAAGCAAAAACACATCAGGGAGATTTGAATCAACAAGGACATCATCAGAGTCAAGTCATGGTTCTGATCAGTTGCCTAATCCAAGGGTGTCAAGTGAGTTGAAGACAGCCTTGGCTACATTGCAGCAGACTTTTGTTGTATCTGATGCCACAAAGCCTGACTGCCCAATCGTGTATGCCAGCAGTGGCTTCTTTACTATGACTGGTTACTCTTCAAAAGAGGTCATTGGAAGAAACTGTCGCTTTCTTCAGGGACCGAAAACAGACCAGAATGAAGTGGCCAAAATCCGAAACGCAGTCAAAACTGGGTCTAGCTACTGCGGTAGGCTCTTCAACTACAAGAAAGACGGCACTCCTTTTTGGAATCTTCTCACCGTCACCCCAATCAAAGATGACAATGGAAAAACCATCAGGTTTATTGGAATGCAGGTTGAGGTCAGCAAGTACACAGAAGGGGTGAATGAGAAGGCATTGAGGCCAAATGGGTTGCCCAAGTCACTAATCCGTTACGACGCTCGACAGAAGGAGAAGGCATTAGGCTCCATTGTTGAAGTTGTACAAACTGTGAAGCATCCACGTTCTCACATGCAGGATGCTAGTAATGAGAATACTAAAAATCATGAAGAGCCGGATAACATGAACCTTAACTATGTTCTTCCAAAATCTGCTGCAATGAGTACACCCGTTAGAGAAACTCCTCAGGCGGATGTGAAGGGTGATGCAACTCGGGGGAGATTTTCCCAGGATGCAGGCAAATATCCTAAAAAGACAGGGCGCAGCCCCTCAATGGGATTTAGATCAAAGTCTCTAGGCTCTGGAGGCAGGCTTGAAAAAGAACCAATTGTTGAACCAGAGGATTTGATGACCATAGATATAGAAAATGCTGATAGTTGGGACCGCACAGAAAGAGAAAGGGATATACGCCAAGGAATTGACCTAGCAACCACATTGGAACGCATTGAAAAGAACTTTGTGATTTCTGATCCTAGAATTCCTGATAATCCAATTATATTTGCATCTGATAGTTTTCTAGAACTGACGGAATATACACGTGAGGAAATTCTGGGAAGAAATTGTCGTTTTCTTCAAGGTCCTGAAACAGATCAAGCAACAGTCTCAAAAATAAGAGATGCCATCAGAGAACAACGGGAAATTACTGTACAGTTAATCAACTATACTAAGAGTGGAAAGAAGTTTTGGAATTTGTTCCACTTGCAACCCATGCGTGACCATAAGGGTGAACTTCAATATTTCATTGGTGTCCAATTGGATGGTAGTGATCATGTAGAACCTCTGCGAAATCGCCTGTCAGAGAGAGCAGAGCTAGAAAGTTGTAAAGTGGTGAAAGCCACTGCAGAAAATGTTAACGAGGCTGTCCGAGAACTTCCTGATGCCAACTTGAGACCAGAAGATCTGTGGGCAATTCATTCTCGTCCTGTCTTCCCAAGACCTCACAAAAGGGGTAGTGCTAGTTGGTTAGCAATACAAGAGATTACTTCACGTGGTGAAAAAATTGATCTGCATCATTTTAAGCCCATAAAACCCTTGGGTTGTGGTGATACTGGCAGTGTCCATTTGGTGGAACTACGAGGTACTTCTATACTGTTTGCTATGAAGGCAATGGAGAAGTCAATAATGTTGAATCGTAACAAGGTTCACCGAGCATGCGCTGAACGGGAAATAATTTCACAACTGGATCATCCATTTCTTCCTACGCTATACACTTCATTTGAGACTTCTACACACGTTTGTTTGATAACAGACTTTTGCTCGGGCGGAGAGTTATTTGCTTTGCTTGATAAGCAGCCTATGAAATTCTTCAAGGAGGACTCTGCTAGGTTCTATGCTGCAGAGGTTGTCATTGCCTTGGAATATCTTCACTGTCTAGGTATAATTTATCGCGACCTTAAGCCTGAGAATATTTTACTCCAGAGGGATGGACATATAGTCTTAACAGACTTTGATTTATCATTTATGGCCTCCTGTAAACCACAGATTATAAGGCATCAATCACCTAAGAAGAGAAGGAGATCTAGTAGTCAACCACCACCAACATTTGTTGCAGAACCAGTTAATCAATCAAATTCCTTCGTTGGAACCGAAGAGTACATTGCTCCTGAAATTGTTACCGGTACAGGCCACAGCAGTGCTATTGATTGGTGGGCTCTTGGTATTTTGTTGTATGAGATGCTATATGGCCGCACCCCTTTCAGGGGGAAAAACAGACAAAGAACATTCACCAACATTTTGCACAAAGATCTGACCTTTCCAAGTAGCATTCCGGTGAGCCTTGCAGCACGGCAGTTGATCAATGCGTTGTTGCAAAGAGACCCTGCCACACGTTTAGGATCCACTACTGGTGCAAACGAAATCAAACAACATCCTTTTTTCCGTGGAATTACTTGGCCTTTGATCCGTTGCATGAGCCCTCCACTGTTAGAGGTGCCTCTTCAGCCTATTGGTTTTGATCCACAGGCCAAGGATATATCGTGGGAAGACGATGGGGTTCTTGTAAATTCAATGGATATGGATATTTTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000166 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005773 GO:0005794 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006996 GO:0007154 GO:0007165 GO:0007623 GO:0008150 GO:0008152 GO:0009314 GO:0009416 GO:0009605 GO:0009606 GO:0009628 GO:0009637 GO:0009638 GO:0009657 GO:0009658 GO:0009719 GO:0009725 GO:0009735 GO:0009785 GO:0009881 GO:0009882 GO:0009898 GO:0009902 GO:0009903 GO:0009904 GO:0009986 GO:0009987 GO:0010033 GO:0010118 GO:0010119 GO:0010155 GO:0010181 GO:0010359 GO:0010360 GO:0010361 GO:0010362 GO:0012505 GO:0016020 GO:0016043 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0019750 GO:0022898 GO:0023052 GO:0030522 GO:0032409 GO:0032410 GO:0032412 GO:0032413 GO:0032553 GO:0032879 GO:0034762 GO:0034763 GO:0034765 GO:0034766 GO:0035556 GO:0036094 GO:0036211 GO:0038023 GO:0042221 GO:0042802 GO:0043167 GO:0043168 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043269 GO:0043271 GO:0043412 GO:0044070 GO:0044092 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044425 GO:0044444 GO:0044459 GO:0044464 GO:0046777 GO:0048037 GO:0048511 GO:0048519 GO:0050662 GO:0050789 GO:0050794 GO:0050896 GO:0051049 GO:0051051 GO:0051179 GO:0051234 GO:0051640 GO:0051641 GO:0051644 GO:0051649 GO:0051656 GO:0051667 GO:0051716 GO:0060089 GO:0065007 GO:0065009 GO:0071214 GO:0071478 GO:0071482 GO:0071483 GO:0071704 GO:0071840 GO:0071944 GO:0097159 GO:0097367 GO:0098552 GO:0098562 GO:0104004 GO:0140096 GO:1901265 GO:1901363 GO:1901564 GO:1903792 GO:1903959 GO:1903960 GO:1904062
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PAS_9 Pkinase

Protein Analysis

960

Amino Acids

107.06

Weight (kDa)

7.32

Isoelectric Point (pI)

42.94

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PAS_9 PF13426 164 - 260 1.3e-20 PAS domain
PAS_3 PF08447 170 - 254 2e-08 PAS fold
PAS PF00989 170 - 255 7.3e-08 PAS fold
PAS_9 PF13426 445 - 537 5.5e-20 PAS domain
PAS_3 PF08447 449 - 534 1.9e-06 PAS fold
PAS PF00989 449 - 537 6.6e-07 PAS fold
Pkinase PF00069 625 - 910 3.1e-60 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 626 - 773 1.7e-16 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 2339
Acc36I ACCTGC 1 cut(s) 757
AccB1I GGYRCC 1 cut(s) 2782
AccB7I CCANNNNNTGG 1 cut(s) 1918
AccII CGCG 2 cut(s) 49, 2241
AciI CCGC 5 cut(s) 660, 1043, 1237, 2115, 2539
AclWI GGATC 7 cut(s) 106, 1316, 2043, 2682, 2695, 2746, 2801
AcoI YGGCCR 2 cut(s) 618, 2536
AcsI RAATTY 6 cut(s) 1329, 1398, 1540, 2153, 2422, 2854
AcuI CTGAAG 3 cut(s) 168, 572, 2774
AcvI CACGTG 2 cut(s) 1391, 1841
AdeI CACNNNGTG 1 cut(s) 1844
AfaI GTAC 9 cut(s) 72, 109, 785, 897, 1018, 1500, 1933, 2447, 2473
AfiI CCNNNNNNNGG 7 cut(s) 318, 1126, 1127, 1918, 2550, 2551, 2552
AflII CTTAAG 1 cut(s) 2246
AflIII ACRYGT 3 cut(s) 1388, 2083, 2678
AgeI ACCGGT 1 cut(s) 2468
AhdI GACNNNNNGTC 1 cut(s) 2285
AjnI CCWGG 1 cut(s) 1080
AjuI GAANNNNNNNTTGG 4 cut(s) 434, 466, 1519, 1551
AleI CACNNNNGTG 1 cut(s) 2484
AluBI AGCT 5 cut(s) 20, 88, 146, 654, 1663
AluI AGCT 5 cut(s) 20, 88, 146, 654, 1663
Alw26I GTCTC 5 cut(s) 1149, 1459, 1735, 2066, 2661
AlwI GGATC 7 cut(s) 106, 1316, 2043, 2682, 2695, 2746, 2801
Ama87I CYCGRG 2 cut(s) 1065, 2110
AoxI GGCC 8 cut(s) 309, 618, 815, 2316, 2476, 2536, 2744, 2814
ApoI RAATTY 6 cut(s) 1329, 1398, 1540, 2153, 2422, 2854
AsiGI ACCGGT 1 cut(s) 2468
Asp700I GAANNNNTTC 3 cut(s) 1544, 2156, 2214
AspLEI GCGC 3 cut(s) 49, 1116, 2009
AspS9I GGNCC 3 cut(s) 593, 1234, 1430
AvaI CYCGRG 2 cut(s) 1065, 2110
AvaII GGWCC 3 cut(s) 593, 1234, 1430
AxyI CCTNAGG 1 cut(s) 1038
BalI TGGCCA 1 cut(s) 620
BamHI GGATCC 1 cut(s) 2687
BanI GGYRCC 1 cut(s) 2782
BanII GRGCYC 2 cut(s) 2506, 2768
BbrPI CACGTG 2 cut(s) 1391, 1841
BbsI GAAGAC 3 cut(s) 449, 1771, 2841
BccI CCATC 8 cut(s) 118, 194, 326, 755, 1481, 1604, 2270, 2834
BceAI ACGGC 2 cut(s) 703, 2654
BciT130I CCWGG 1 cut(s) 1082
BclI TGATCA 3 cut(s) 406, 1618, 2646
BcoDI GTCTC 5 cut(s) 1149, 1459, 1735, 2066, 2661
BfmI CTRYAG 2 cut(s) 1692, 2187
BfrI CTTAAG 1 cut(s) 2246
BfuAI ACCTGC 1 cut(s) 757
BglII AGATCT 3 cut(s) 1750, 2369, 2596
BmcAI AGTACT 1 cut(s) 109
Bme1390I CCNGG 1 cut(s) 1082
Bme18I GGWCC 3 cut(s) 593, 1234, 1430
BmeRI GACNNNNNGTC 1 cut(s) 2285
BmeT110I CYCGRG 2 cut(s) 1065, 2110
BmgT120I GGNCC 3 cut(s) 593, 1234, 1430
BmiI GGNNCC 6 cut(s) 594, 880, 1235, 2437, 2689, 2784
BmrFI CCNGG 1 cut(s) 1082
BmrI ACTGGG 1 cut(s) 654
BmuI ACTGGG 1 cut(s) 654
BpiI GAAGAC 3 cut(s) 449, 1771, 2841
BpmI CTGGAG 2 cut(s) 1176, 2252
BpuEI CTTGAG 1 cut(s) 1759
BsaAI YACGTR 2 cut(s) 1391, 1841
BsaBI GATNNNNATC 3 cut(s) 367, 1135, 1860
BsaI GGTCTC 2 cut(s) 1735, 2661
BsaJI CCNNGG 8 cut(s) 422, 450, 1080, 1264, 1884, 2205, 2731, 2817
BsaWI WCCGGW 2 cut(s) 2468, 2620
BsaXI ACNNNNNCTCC 4 cut(s) 258, 288, 2359, 2389
Bsc4I CCNNNNNNNGG 7 cut(s) 318, 1126, 1127, 1918, 2550, 2551, 2552
Bse118I RCCGGY 1 cut(s) 2468
Bse1I ACTGG 6 cut(s) 547, 649, 1906, 2037, 2408, 2701
Bse21I CCTNAGG 1 cut(s) 1038
Bse3DI GCAATG 6 cut(s) 64, 458, 1017, 1965, 2199, 2448
Bse8I GATNNNNATC 3 cut(s) 367, 1135, 1860
BseBI CCWGG 1 cut(s) 1082
BseDI CCNNGG 8 cut(s) 422, 450, 1080, 1264, 1884, 2205, 2731, 2817
BseJI GATNNNNATC 3 cut(s) 367, 1135, 1860
BseLI CCNNNNNNNGG 7 cut(s) 318, 1126, 1127, 1918, 2550, 2551, 2552
BseMI GCAATG 6 cut(s) 64, 458, 1017, 1965, 2199, 2448
BseMII CTCAG 2 cut(s) 1052, 2244
BseNI ACTGG 6 cut(s) 547, 649, 1906, 2037, 2408, 2701
BseRI GAGGAG 1 cut(s) 1026
Bsh1236I CGCG 2 cut(s) 49, 2241
BshFI GGCC 8 cut(s) 311, 620, 817, 2318, 2478, 2538, 2746, 2816
BshNI GGYRCC 1 cut(s) 2782
BshTI ACCGGT 1 cut(s) 2468
BsiHKCI CYCGRG 2 cut(s) 1065, 2110
BsiSI CCGG 4 cut(s) 281, 968, 2469, 2621
BslFI GGGAC 3 cut(s) 313, 606, 1247
BslI CCNNNNNNNGG 7 cut(s) 318, 1126, 1127, 1918, 2550, 2551, 2552
BsmAI GTCTC 5 cut(s) 1149, 1459, 1735, 2066, 2661
BsmFI GGGAC 3 cut(s) 313, 606, 1247
BsmI GAATGC 3 cut(s) 128, 768, 2616
BsnI GGCC 8 cut(s) 311, 620, 817, 2318, 2478, 2538, 2746, 2816
Bso31I GGTCTC 2 cut(s) 1735, 2661
BsoBI CYCGRG 2 cut(s) 1065, 2110
Bsp1286I GDGCHC 2 cut(s) 2506, 2768
Bsp1407I TGTACA 2 cut(s) 895, 1498
Bsp68I TCGCGA 1 cut(s) 2241
BspACI CCGC 5 cut(s) 660, 1043, 1237, 2115, 2539
BspANI GGCC 8 cut(s) 311, 620, 817, 2318, 2478, 2538, 2746, 2816
BspCNI CTCAG 2 cut(s) 1051, 2245
BspFNI CGCG 2 cut(s) 49, 2241
BspHI TCATGA 1 cut(s) 958
BspLI GGNNCC 6 cut(s) 594, 880, 1235, 2437, 2689, 2784
BspMAI CTGCAG 2 cut(s) 1696, 2191
BspMI ACCTGC 1 cut(s) 757
BspPI GGATC 7 cut(s) 106, 1316, 2043, 2682, 2695, 2746, 2801
BspQI GCTCTTC 2 cut(s) 674, 957
BspT107I GGYRCC 1 cut(s) 2782
BspTI CTTAAG 1 cut(s) 2246
BspTNI GGTCTC 2 cut(s) 1735, 2661
BsrDI GCAATG 6 cut(s) 64, 458, 1017, 1965, 2199, 2448
BsrFI RCCGGY 1 cut(s) 2468
BsrGI TGTACA 2 cut(s) 895, 1498
BsrI ACTGG 6 cut(s) 547, 649, 1906, 2037, 2408, 2701
BssAI RCCGGY 1 cut(s) 2468
BssECI CCNNGG 8 cut(s) 422, 450, 1080, 1264, 1884, 2205, 2731, 2817
BssT1I CCWWGG 6 cut(s) 422, 450, 1264, 1884, 2205, 2817
Bst2UI CCWGG 1 cut(s) 1082
Bst4CI ACNGT 9 cut(s) 578, 715, 904, 1453, 1498, 1503, 1944, 2222, 2775
Bst6I CTCTTC 7 cut(s) 144, 556, 674, 957, 2354, 2436, 2793
BstAFI CTTAAG 1 cut(s) 2246
BstAPI GCANNNNNTGC 1 cut(s) 1561
BstAUI TGTACA 2 cut(s) 895, 1498
BstBAI YACGTR 2 cut(s) 1391, 1841
BstC8I GCNNGC 4 cut(s) 520, 1090, 1163, 2005
BstDEI CTNAG 4 cut(s) 1038, 1518, 2253, 2355
BstDSI CCRYGG 1 cut(s) 2731
BstFNI CGCG 2 cut(s) 49, 2241
BstHHI GCGC 3 cut(s) 49, 1116, 2009
BstMAI GTCTC 5 cut(s) 1149, 1459, 1735, 2066, 2661
BstNI CCWGG 1 cut(s) 1082
BstNSI RCATGY 2 cut(s) 928, 2007
BstSCI CCNGG 1 cut(s) 1080
BstSFI CTRYAG 2 cut(s) 1692, 2187
BstUI CGCG 2 cut(s) 49, 2241
BstV2I GAAGAC 3 cut(s) 449, 1771, 2841
BstX2I RGATCY 4 cut(s) 1750, 2369, 2596, 2687
BstXI CCANNNNNNTGG 2 cut(s) 1610, 2276
BstYI RGATCY 4 cut(s) 1750, 2369, 2596, 2687
Bsu36I CCTNAGG 1 cut(s) 1038
BsuRI GGCC 8 cut(s) 311, 620, 817, 2318, 2478, 2538, 2746, 2816
BtgI CCRYGG 1 cut(s) 2731
BtsI GCAGTG 5 cut(s) 162, 529, 1689, 1912, 2491
BtsIMutI CAGTG 7 cut(s) 162, 529, 1689, 1912, 2218, 2491, 2771
BtuMI TCGCGA 1 cut(s) 2241
BveI ACCTGC 1 cut(s) 757
Cac8I GCNNGC 4 cut(s) 520, 1090, 1163, 2005
CciI TCATGA 1 cut(s) 958
CfoI GCGC 3 cut(s) 49, 1116, 2009
Cfr10I RCCGGY 1 cut(s) 2468
Cfr13I GGNCC 3 cut(s) 593, 1234, 1430
CseI GACGC 1 cut(s) 860
Csp6I GTAC 9 cut(s) 71, 108, 784, 896, 1017, 1499, 1932, 2446, 2472
CspAI ACCGGT 1 cut(s) 2468
CviAII CATG 8 cut(s) 398, 925, 959, 976, 1561, 1622, 2004, 2761
CviQI GTAC 9 cut(s) 71, 108, 784, 896, 1017, 1499, 1932, 2446, 2472
DdeI CTNAG 4 cut(s) 1038, 1518, 2253, 2355
DraIII CACNNNGTG 1 cut(s) 1844
DriI GACNNNNNGTC 1 cut(s) 2285
EaeI YGGCCR 2 cut(s) 618, 2536
Eam1104I CTCTTC 7 cut(s) 144, 556, 674, 957, 2354, 2436, 2793
Eam1105I GACNNNNNGTC 1 cut(s) 2285
EarI CTCTTC 7 cut(s) 144, 556, 674, 957, 2354, 2436, 2793
EciI GGCGGA 2 cut(s) 1058, 2130
Eco130I CCWWGG 6 cut(s) 422, 450, 1264, 1884, 2205, 2817
Eco24I GRGCYC 2 cut(s) 2506, 2768
Eco31I GGTCTC 2 cut(s) 1735, 2661
Eco47I GGWCC 3 cut(s) 593, 1234, 1430
Eco57I CTGAAG 3 cut(s) 168, 572, 2774
Eco72I CACGTG 2 cut(s) 1391, 1841
Eco81I CCTNAGG 1 cut(s) 1038
Eco88I CYCGRG 2 cut(s) 1065, 2110
EcoO109I RGGNCCY 1 cut(s) 1430
EcoRI GAATTC 1 cut(s) 1329
EcoRII CCWGG 1 cut(s) 1080
EcoT14I CCWWGG 6 cut(s) 422, 450, 1264, 1884, 2205, 2817
EcoT38I GRGCYC 2 cut(s) 2506, 2768
ErhI CCWWGG 6 cut(s) 422, 450, 1264, 1884, 2205, 2817
FaeI CATG 8 cut(s) 401, 928, 962, 979, 1564, 1625, 2007, 2764
FalI AAGNNNNNCTT 2 cut(s) 434, 466
FaqI GGGAC 3 cut(s) 313, 606, 1247
FatI CATG 8 cut(s) 397, 924, 958, 975, 1560, 1621, 2003, 2760
FbaI TGATCA 3 cut(s) 406, 1618, 2646
FriOI GRGCYC 2 cut(s) 2506, 2768
GlaI GCGC 3 cut(s) 48, 1115, 2008
GsuI CTGGAG 2 cut(s) 1176, 2252
HaeIII GGCC 8 cut(s) 311, 620, 817, 2318, 2478, 2538, 2746, 2816
HapII CCGG 4 cut(s) 281, 968, 2469, 2621
HgaI GACGC 1 cut(s) 860
HhaI GCGC 3 cut(s) 49, 1116, 2009
Hin1II CATG 8 cut(s) 401, 928, 962, 979, 1564, 1625, 2007, 2764
Hin6I GCGC 3 cut(s) 47, 1114, 2007
HinP1I GCGC 3 cut(s) 47, 1114, 2007
HincII GTYRAC 2 cut(s) 1705, 2381
HindII GTYRAC 2 cut(s) 1705, 2381
HinfI GANTC 8 cut(s) 152, 212, 287, 368, 389, 703, 1981, 2168
HpaI GTTAAC 1 cut(s) 1705
HpaII CCGG 4 cut(s) 281, 968, 2469, 2621
Hpy166II GTNNAC 7 cut(s) 786, 1019, 1580, 1705, 1996, 2327, 2381
Hpy188III TCNNGA 9 cut(s) 959, 1155, 1334, 1370, 1433, 1727, 2240, 2269, 2456
Hpy8I GTNNAC 7 cut(s) 786, 1019, 1580, 1705, 1996, 2327, 2381
Hpy99I CGWCG 1 cut(s) 854
HpyCH4III ACNGT 9 cut(s) 578, 715, 904, 1453, 1498, 1503, 1944, 2222, 2775
HpyCH4IV ACGT 6 cut(s) 195, 916, 1390, 1840, 2085, 2680
HpyF3I CTNAG 4 cut(s) 1038, 1518, 2253, 2355
HpySE526I ACGT 6 cut(s) 195, 916, 1390, 1840, 2085, 2680
Hsp92II CATG 8 cut(s) 401, 928, 962, 979, 1564, 1625, 2007, 2764
HspAI GCGC 3 cut(s) 47, 1114, 2007
Ksp22I TGATCA 3 cut(s) 406, 1618, 2646
KspAI GTTAAC 1 cut(s) 1705
LguI GCTCTTC 2 cut(s) 674, 957
LmnI GCTCC 2 cut(s) 884, 2458
MaeII ACGT 6 cut(s) 195, 916, 1390, 1840, 2085, 2680
MaeIII GTNAC 8 cut(s) 191, 545, 715, 834, 845, 1565, 1985, 2464
MfeI CAATTG 2 cut(s) 1179, 1604
MflI RGATCY 4 cut(s) 1750, 2369, 2596, 2687
MhlI GDGCHC 2 cut(s) 2506, 2768
MlsI TGGCCA 1 cut(s) 620
MluNI TGGCCA 1 cut(s) 620
MlyI GAGTC 4 cut(s) 161, 206, 398, 2162
MmeI TCCRAC 2 cut(s) 46, 2413
Mox20I TGGCCA 1 cut(s) 620
MroXI GAANNNNTTC 3 cut(s) 1544, 2156, 2214
MscI TGGCCA 1 cut(s) 620
MseI TTAA 9 cut(s) 117, 306, 984, 1505, 1704, 1869, 2247, 2291, 2412
MslI CAYNNNNRTG 4 cut(s) 118, 1575, 2484, 2621
Msp20I TGGCCA 1 cut(s) 620
MspA1I CMGCKG 2 cut(s) 20, 146
MspCI CTTAAG 1 cut(s) 2246
MspI CCGG 4 cut(s) 281, 968, 2469, 2621
MspR9I CCNGG 1 cut(s) 1082
MunI CAATTG 2 cut(s) 1179, 1604
Mva1269I GAATGC 3 cut(s) 128, 768, 2616
MvaI CCWGG 1 cut(s) 1082
MvnI CGCG 2 cut(s) 49, 2241
NlaIII CATG 8 cut(s) 401, 928, 962, 979, 1564, 1625, 2007, 2764
NlaIV GGNNCC 6 cut(s) 594, 880, 1235, 2437, 2689, 2784
NmuCI GTSAC 4 cut(s) 191, 715, 834, 1565
NruI TCGCGA 1 cut(s) 2241
NspI RCATGY 2 cut(s) 928, 2007
OliI CACNNNNGTG 1 cut(s) 2484
PaeI GCATGC 1 cut(s) 2007
PagI TCATGA 1 cut(s) 958
PciSI GCTCTTC 2 cut(s) 674, 957
PcsI WCGNNNNNNNCGW 2 cut(s) 233, 2436
PctI GAATGC 3 cut(s) 128, 768, 2616
PdmI GAANNNNTTC 3 cut(s) 1544, 2156, 2214
PfeI GAWTC 4 cut(s) 287, 368, 703, 1981
PflMI CCANNNNNTGG 1 cut(s) 1918
PinAI ACCGGT 1 cut(s) 2468
PleI GAGTC 4 cut(s) 160, 206, 397, 2162
PmaCI CACGTG 2 cut(s) 1391, 1841
PmlI CACGTG 2 cut(s) 1391, 1841
PpsI GAGTC 4 cut(s) 160, 206, 397, 2162
Ppu21I YACGTR 2 cut(s) 1391, 1841
PpuMI RGGWCCY 1 cut(s) 1430
PsiI TTATAA 1 cut(s) 2339
Psp5II RGGWCCY 1 cut(s) 1430
Psp6I CCWGG 1 cut(s) 1080
PspCI CACGTG 2 cut(s) 1391, 1841
PspGI CCWGG 1 cut(s) 1080
PspN4I GGNNCC 6 cut(s) 594, 880, 1235, 2437, 2689, 2784
PspPI GGNCC 3 cut(s) 593, 1234, 1430
PspPPI RGGWCCY 1 cut(s) 1430
PstI CTGCAG 2 cut(s) 1696, 2191
PsuI RGATCY 4 cut(s) 1750, 2369, 2596, 2687
PvuII CAGCTG 2 cut(s) 20, 146
RruI TCGCGA 1 cut(s) 2241
RsaI GTAC 9 cut(s) 72, 109, 785, 897, 1018, 1500, 1933, 2447, 2473
RsaNI GTAC 9 cut(s) 71, 108, 784, 896, 1017, 1499, 1932, 2446, 2472
RseI CAYNNNNRTG 4 cut(s) 118, 1575, 2484, 2621
SapI GCTCTTC 2 cut(s) 674, 957
SaqAI TTAA 9 cut(s) 117, 306, 984, 1505, 1704, 1869, 2247, 2291, 2412
Sau96I GGNCC 3 cut(s) 593, 1234, 1430
ScaI AGTACT 1 cut(s) 109
SchI GAGTC 4 cut(s) 161, 206, 398, 2162
ScrFI CCNGG 1 cut(s) 1082
SduI GDGCHC 2 cut(s) 2506, 2768
SfcI CTRYAG 2 cut(s) 1692, 2187
SinI GGWCC 3 cut(s) 593, 1234, 1430
SmiMI CAYNNNNRTG 4 cut(s) 118, 1575, 2484, 2621
SmlI CTYRAG 2 cut(s) 1738, 2246
SmoI CTYRAG 2 cut(s) 1738, 2246
SphI GCATGC 1 cut(s) 2007
SsiI CCGC 5 cut(s) 660, 1043, 1237, 2115, 2539
SspI AATATT 2 cut(s) 1589, 2260
StyD4I CCNGG 1 cut(s) 1080
StyI CCWWGG 6 cut(s) 422, 450, 1264, 1884, 2205, 2817
TaaI ACNGT 9 cut(s) 578, 715, 904, 1453, 1498, 1503, 1944, 2222, 2775
TaiI ACGT 6 cut(s) 198, 919, 1393, 1843, 2088, 2683
TaqI TCGA 2 cut(s) 132, 856
TaqII GACCGA 1 cut(s) 610
TatI WGTACW 7 cut(s) 70, 107, 783, 895, 1016, 1498, 2445
TauI GCSGC 1 cut(s) 2541
TfiI GAWTC 4 cut(s) 287, 368, 703, 1981
Tru1I TTAA 9 cut(s) 117, 306, 984, 1505, 1704, 1869, 2247, 2291, 2412
Tru9I TTAA 9 cut(s) 117, 306, 984, 1505, 1704, 1869, 2247, 2291, 2412
TscAI CASTG 7 cut(s) 169, 529, 1696, 1912, 2225, 2491, 2778
TseFI GTSAC 4 cut(s) 191, 715, 834, 1565
Tsp45I GTSAC 4 cut(s) 191, 715, 834, 1565
TspDTI ATGAA 9 cut(s) 102, 627, 975, 992, 1582, 1754, 1967, 2055, 2165
TspGWI ACGGA 5 cut(s) 242, 833, 1394, 2720, 2744
TspRI CASTG 7 cut(s) 169, 529, 1696, 1912, 2225, 2491, 2778
Van91I CCANNNNNTGG 1 cut(s) 1918
Vha464I CTTAAG 1 cut(s) 2246
VpaK11BI GGWCC 3 cut(s) 593, 1234, 1430
XapI RAATTY 6 cut(s) 1329, 1398, 1540, 2153, 2422, 2854
XbaI TCTAGA 1 cut(s) 1369
XceI RCATGY 2 cut(s) 928, 2007
XcmI CCANNNNNNNNNTGG 2 cut(s) 1752, 1882
XmnI GAANNNNTTC 3 cut(s) 1544, 2156, 2214
ZrmI AGTACT 1 cut(s) 109
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.