Rw6G022150

Phototropin-2-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr6
OG0004987
Physical Location & Seq
Reverse (-)
43857412 .. 43866503
9092 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw6G022150.1

Sequence Viewer

Length: 2805 bp
ATGATGCTGGAGTACATCCTAGTAGTAAGCTGGAAAGTGGATCATCAAGTACTTCATTTAAGTGGATGGCAAGCAGCTGAAGAGTCTAGCAACACTGCTGCTGCTGCTGCTTCTGGTGACGTTGATGGAATTTTAGACTCAAAAATCATAACGGAGAAGGCGAGCATAGTGGCAAGGACAGCAGAATGGGGAGTTGTGGTGAAGCCGGATGATTCTGGTGAAGGAACTTTTAAGGCCATAGGGAGGTCATCAGATGATGGCAACAAAAGCAAAAACACATCAGGGAGATTTGAATCAACAAGGACATCATCAGAGTCAAGTCATGGGTCTGATCAGTTGCCTAATCCAAGGGTGTCAAGTGAGTTGAAGACAGCTTTGGCTACATTGCAGCAGACTTTTGTTGTGTCTGATGCCACAAAGCCTGATTGCCCAATCGTGTATGCCAGCAGTGGGTTCTTTACTATGACTGGTTACTCTTCAAAAGAGGTCATTGGAAGAAACTGTCGCTTTCTTCAGGGACCGGAAACAGACCAGAATGAAGTGGCCAAAATCCGAAACGCAGTCAAAACTGGGTCTAGCTACTGCGGTAGGCTCTTCAACTACAAGAAAGATGGCACTCCTTTTTGGAATCTTCTCACCGTCACCCCAATCAAAGATGACAATGGAAAAACCATCAAGTTTATTGGAATGCAGGTTGAGGTCAGCAAGTACACAGAAGGGGTGAATGAGAAGGCATTGAGGCCAAATGGGTTGTCCACGTCACTAATCCGTTATGACGCTCGACAGAAGGAGAAAGCATTAGGCTCCATTGTTGAAGTTGTACAAACTGTGAAACATCCACGTTCTCACATGCAGGATGCTAGCAATGAGAATACTAAAAATCATGAAGAGCCGGATAACATGAACCTTAATTATGTTCTTCCAAAATCTGCTGCATTGAGTACACCTGTTAGAGAGACTCCTCAGGTGGATGTGAAGGGTGATGCAACTCGGGGGAGATTTTCCCAGGATGCGGGCAAAAATCCTAAAAAGTCAGGGCGCAGCCCCTCAATGGGATTTAGATCAAAGTCTCTAGGCTCTGAAGGCAGGCTTGAAAAAGAACCAAGTGTTGAACCAGAGGATTTGATGACCATAGATATAGAAAATGCTGATAGTTGGGACCGCACAGAAAGGGAAAGGGATATACGCCAAGGAATTGACCTAGCAACCACATTGGAACGCATTGAAAAGAACTTTGTGATTTCTGATCCTAGAATTCCTGATAATCCAATTATATTTGCATCTGATAGTTTTCTAGAACTGACGGAATATACACGTGAGGAAATTCTGGGAAGAAATTGTCGTTTTCTTCAAGGTCCTGAAACAGATCAAGCAACAGTCTCAAAAATAAGAGATGCCATCAGAGAACAACGGGAAATTACTGTACAGTTAATCAACTATACTAAGAGTGGAAAGAAGTTTTGGAATTTGTTCCACTTGCAACCCATGCGTGACCATAAGGGTGAACTTCAATATTTCATTGGTGTCCAATTGGATGGTAGTGATCATGTAGAACCTCTGCGAAATCGCCTGTCAGAGAGAGCAGAGCTAGAAAGTTCTAAAGTGGTGAAAGCCACTGCAGAAAATGTTAACGAGGCTGTCCGAGAACTTCCTGATGCCAACTTGAGACCAGAAGATCTGTGGGCAATTCATTCTCGTCCTGTCTTCCCAAGACCTCACAAAAGGGGTAGTGCTAGTTGGTTAGCAATACAAGAGATTACTTCACGTGGTGAAAAAATTGATCTGCATCATTTTAAGCCCATAAAACCCTTGGGTTGTGGTGATACTGGCAGTGTCCATTTGGTGGAACTACGAGGTACTTCTATACTGTTTGCTATGAAGGCAATGGAGAAGTCAATAATGTTGAATCGTAACAAGGTTCACCGAGCATGCGCTGAACGGGAAATAATTTCACAACTGGATCATCCATTTCTTCCTACGCTATACACTTCATTTGAGACTTCTACACACGTTTGTTTGATAACAGACTTTTGCTCAGGCGGAGAGTTATTTGCTTTGCTTGATAAGCAGCCTATGAAATTCTTCAAGGAGGACTCTGCTAGGTTCTATGCTGCAGAGGTTGTCATTGCCTTGGAATATCTTCACTGTCTAGGTATAATTTATCGCGACCTTAAGCCTGAAAATATTTTACTCCAGAAGGATGGACATATTGTCTTAACAGACTTTGATTTATCATTTATGGCCTCCTGTAAACCACAGATTATAAGGCATCAATCACCTAAGAAGAGAAGGAGATCTAGTAGTCAACCGCCACCAACATTTGTTGCAGAACCAGTTAATCAATCAAATTCCTTCGTTGGAACCGAAGAGTACATTGCTCCTGAAATTGTTACCGGTACAGGCCACAGCAGTGCTATTGATTGGTGGGCTCTTGGTATTTTGTTGTATGAGATGCTATATGGCCGCACCCCTTTCAGGGGGAAAAACAGACAAAGAACATTCACCAACATTTTGCAGAAAGATCTGACCTTTCCAAGTAGCATTCCGGTGAGCCTTGCAGCACGGCAGTTGATCAATGCGTTGTTGCAAAGAGACCCTGCCACACGTTTAGGATCCACTACTGGTGCAAACGAAATCAAACAACATCCTTTTTTCCGTGGAATTACATGGCCTTTGATCCGTTGCATGAGCCCTCCACCGTTAGATGTGCCTCTTCAGCCTATTGGTTTTGATCCACAGGCCAAGGATATATCGTGGGAAGACGACGGGGTTCTTGTAAATTCAATGGATATGGATATTTTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000166 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005773 GO:0005794 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006996 GO:0007154 GO:0007165 GO:0007623 GO:0008150 GO:0008152 GO:0009314 GO:0009416 GO:0009605 GO:0009606 GO:0009628 GO:0009637 GO:0009638 GO:0009657 GO:0009658 GO:0009719 GO:0009725 GO:0009735 GO:0009785 GO:0009881 GO:0009882 GO:0009898 GO:0009902 GO:0009903 GO:0009904 GO:0009986 GO:0009987 GO:0010033 GO:0010118 GO:0010119 GO:0010155 GO:0010181 GO:0010359 GO:0010360 GO:0010361 GO:0010362 GO:0012505 GO:0016020 GO:0016043 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0019750 GO:0022898 GO:0023052 GO:0030522 GO:0032409 GO:0032410 GO:0032412 GO:0032413 GO:0032553 GO:0032879 GO:0034762 GO:0034763 GO:0034765 GO:0034766 GO:0035556 GO:0036094 GO:0036211 GO:0038023 GO:0042221 GO:0042802 GO:0043167 GO:0043168 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043269 GO:0043271 GO:0043412 GO:0044070 GO:0044092 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044425 GO:0044444 GO:0044459 GO:0044464 GO:0046777 GO:0048037 GO:0048511 GO:0048519 GO:0050662 GO:0050789 GO:0050794 GO:0050896 GO:0051049 GO:0051051 GO:0051179 GO:0051234 GO:0051640 GO:0051641 GO:0051644 GO:0051649 GO:0051656 GO:0051667 GO:0051716 GO:0060089 GO:0065007 GO:0065009 GO:0071214 GO:0071478 GO:0071482 GO:0071483 GO:0071704 GO:0071840 GO:0071944 GO:0097159 GO:0097367 GO:0098552 GO:0098562 GO:0104004 GO:0140096 GO:1901265 GO:1901363 GO:1901564 GO:1903792 GO:1903959 GO:1903960 GO:1904062
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PAS_9 Pkinase

Protein Analysis

934

Amino Acids

104.63

Weight (kDa)

6.46

Isoelectric Point (pI)

42.4

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PAS_9 PF13426 139 - 235 9.4e-21 PAS domain
PAS_3 PF08447 145 - 229 6.4e-09 PAS fold
PAS PF00989 145 - 230 4.3e-08 PAS fold
PAS_9 PF13426 420 - 512 5.3e-20 PAS domain
PAS_3 PF08447 424 - 509 1.8e-06 PAS fold
PAS PF00989 424 - 512 6.4e-07 PAS fold
Pkinase PF00069 600 - 885 2.2e-60 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 601 - 748 1.3e-16 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 2264
Acc36I ACCTGC 1 cut(s) 682
AccB7I CCANNNNNTGG 1 cut(s) 1843
AccII CGCG 1 cut(s) 2166
AciI CCGC 6 cut(s) 585, 1013, 1162, 2040, 2309, 2464
AclWI GGATC 7 cut(s) 48, 1241, 1968, 2607, 2620, 2671, 2726
AcoI YGGCCR 2 cut(s) 543, 2461
AcsI RAATTY 7 cut(s) 129, 1254, 1323, 1465, 2078, 2347, 2779
AcuI CTGAAG 4 cut(s) 99, 497, 1101, 2699
AcvI CACGTG 2 cut(s) 1316, 1766
AdeI CACNNNGTG 1 cut(s) 1769
AfaI GTAC 9 cut(s) 14, 51, 710, 822, 943, 1425, 1858, 2372, 2398
AfiI CCNNNNNNNGG 9 cut(s) 243, 450, 1012, 1051, 1052, 1843, 2475, 2476, 2477
AflII CTTAAG 1 cut(s) 2171
AflIII ACRYGT 3 cut(s) 1313, 2008, 2603
AgeI ACCGGT 1 cut(s) 2393
AhdI GACNNNNNGTC 1 cut(s) 2210
AjiI CACGTC 1 cut(s) 759
AjnI CCWGG 1 cut(s) 1005
AjuI GAANNNNNNNTTGG 4 cut(s) 359, 391, 1444, 1476
AleI CACNNNNGTG 1 cut(s) 2409
AluBI AGCT 5 cut(s) 30, 77, 374, 579, 1588
AluI AGCT 5 cut(s) 30, 77, 374, 579, 1588
Alw26I GTCTC 6 cut(s) 950, 1074, 1384, 1660, 1991, 2586
AlwI GGATC 7 cut(s) 48, 1241, 1968, 2607, 2620, 2671, 2726
Ama87I CYCGRG 1 cut(s) 990
AoxI GGCC 8 cut(s) 234, 543, 740, 2241, 2401, 2461, 2669, 2739
ApoI RAATTY 7 cut(s) 129, 1254, 1323, 1465, 2078, 2347, 2779
ArsI GACNNNNNNTTYG 2 cut(s) 737, 769
AsiGI ACCGGT 1 cut(s) 2393
Asp700I GAANNNNTTC 3 cut(s) 1469, 2081, 2139
AspLEI GCGC 2 cut(s) 1041, 1934
AspS9I GGNCC 3 cut(s) 518, 1159, 1355
AsuNHI GCTAGC 1 cut(s) 860
AvaI CYCGRG 1 cut(s) 990
AvaII GGWCC 3 cut(s) 518, 1159, 1355
AxyI CCTNAGG 1 cut(s) 963
BalI TGGCCA 1 cut(s) 545
BamHI GGATCC 1 cut(s) 2612
BanII GRGCYC 2 cut(s) 2431, 2693
BbrPI CACGTG 2 cut(s) 1316, 1766
BbsI GAAGAC 3 cut(s) 374, 1696, 2766
BccI CCATC 8 cut(s) 60, 119, 251, 605, 680, 1406, 1529, 2195
BceAI ACGGC 1 cut(s) 2579
BciT130I CCWGG 1 cut(s) 1007
BclI TGATCA 3 cut(s) 331, 1543, 2571
BcoDI GTCTC 6 cut(s) 950, 1074, 1384, 1660, 1991, 2586
BfmI CTRYAG 2 cut(s) 1617, 2112
BfrI CTTAAG 1 cut(s) 2171
BfuAI ACCTGC 1 cut(s) 682
BglII AGATCT 3 cut(s) 1675, 2294, 2521
BmcAI AGTACT 1 cut(s) 51
Bme1390I CCNGG 1 cut(s) 1007
Bme18I GGWCC 3 cut(s) 518, 1159, 1355
BmeRI GACNNNNNGTC 1 cut(s) 2210
BmeT110I CYCGRG 1 cut(s) 990
BmgBI CACGTC 1 cut(s) 759
BmgT120I GGNCC 3 cut(s) 518, 1159, 1355
BmiI GGNNCC 5 cut(s) 519, 805, 1160, 2362, 2614
BmrFI CCNGG 1 cut(s) 1007
BmrI ACTGGG 1 cut(s) 579
BmtI GCTAGC 1 cut(s) 864
BmuI ACTGGG 1 cut(s) 579
BpiI GAAGAC 3 cut(s) 374, 1696, 2766
BpmI CTGGAG 2 cut(s) 29, 2177
Bpu10I CCTNAGC 1 cut(s) 2035
BpuEI CTTGAG 1 cut(s) 1684
BsaAI YACGTR 2 cut(s) 1316, 1766
BsaBI GATNNNNATC 3 cut(s) 292, 1060, 1785
BsaI GGTCTC 2 cut(s) 1660, 2586
BsaJI CCNNGG 7 cut(s) 347, 1005, 1189, 1809, 2130, 2656, 2742
BsaWI WCCGGW 3 cut(s) 520, 2393, 2545
BsaXI ACNNNNNCTCC 4 cut(s) 183, 213, 2284, 2314
Bsc4I CCNNNNNNNGG 9 cut(s) 243, 450, 1012, 1051, 1052, 1843, 2475, 2476, 2477
Bse118I RCCGGY 1 cut(s) 2393
Bse1I ACTGG 6 cut(s) 472, 574, 1831, 1962, 2333, 2626
Bse21I CCTNAGG 1 cut(s) 963
Bse3DI GCAATG 5 cut(s) 383, 871, 1890, 2124, 2373
Bse8I GATNNNNATC 3 cut(s) 292, 1060, 1785
BseBI CCWGG 1 cut(s) 1007
BseDI CCNNGG 7 cut(s) 347, 1005, 1189, 1809, 2130, 2656, 2742
BseJI GATNNNNATC 3 cut(s) 292, 1060, 1785
BseLI CCNNNNNNNGG 9 cut(s) 243, 450, 1012, 1051, 1052, 1843, 2475, 2476, 2477
BseMI GCAATG 5 cut(s) 383, 871, 1890, 2124, 2373
BseMII CTCAG 2 cut(s) 977, 2049
BseNI ACTGG 6 cut(s) 472, 574, 1831, 1962, 2333, 2626
BseRI GAGGAG 1 cut(s) 951
Bsh1236I CGCG 1 cut(s) 2166
BshFI GGCC 8 cut(s) 236, 545, 742, 2243, 2403, 2463, 2671, 2741
BshTI ACCGGT 1 cut(s) 2393
BsiHKCI CYCGRG 1 cut(s) 990
BsiSI CCGG 5 cut(s) 206, 521, 893, 2394, 2546
BslFI GGGAC 2 cut(s) 531, 1172
BslI CCNNNNNNNGG 9 cut(s) 243, 450, 1012, 1051, 1052, 1843, 2475, 2476, 2477
BsmAI GTCTC 6 cut(s) 950, 1074, 1384, 1660, 1991, 2586
BsmFI GGGAC 2 cut(s) 531, 1172
BsmI GAATGC 2 cut(s) 693, 2541
BsnI GGCC 8 cut(s) 236, 545, 742, 2243, 2403, 2463, 2671, 2741
Bso31I GGTCTC 2 cut(s) 1660, 2586
BsoBI CYCGRG 1 cut(s) 990
Bsp1286I GDGCHC 2 cut(s) 2431, 2693
Bsp1407I TGTACA 2 cut(s) 820, 1423
Bsp68I TCGCGA 1 cut(s) 2166
BspACI CCGC 6 cut(s) 585, 1013, 1162, 2040, 2309, 2464
BspANI GGCC 8 cut(s) 236, 545, 742, 2243, 2403, 2463, 2671, 2741
BspCNI CTCAG 2 cut(s) 976, 2048
BspFNI CGCG 1 cut(s) 2166
BspHI TCATGA 1 cut(s) 883
BspLI GGNNCC 5 cut(s) 519, 805, 1160, 2362, 2614
BspMAI CTGCAG 2 cut(s) 1621, 2116
BspMI ACCTGC 1 cut(s) 682
BspOI GCTAGC 1 cut(s) 864
BspPI GGATC 7 cut(s) 48, 1241, 1968, 2607, 2620, 2671, 2726
BspQI GCTCTTC 2 cut(s) 599, 882
BspTI CTTAAG 1 cut(s) 2171
BspTNI GGTCTC 2 cut(s) 1660, 2586
BsrDI GCAATG 5 cut(s) 383, 871, 1890, 2124, 2373
BsrFI RCCGGY 1 cut(s) 2393
BsrGI TGTACA 2 cut(s) 820, 1423
BsrI ACTGG 6 cut(s) 472, 574, 1831, 1962, 2333, 2626
BssAI RCCGGY 1 cut(s) 2393
BssECI CCNNGG 7 cut(s) 347, 1005, 1189, 1809, 2130, 2656, 2742
BssT1I CCWWGG 5 cut(s) 347, 1189, 1809, 2130, 2742
Bst2UI CCWGG 1 cut(s) 1007
Bst4CI ACNGT 9 cut(s) 503, 640, 829, 1378, 1423, 1428, 1869, 2147, 2700
Bst6I CTCTTC 7 cut(s) 75, 481, 599, 882, 2279, 2361, 2718
BstAFI CTTAAG 1 cut(s) 2171
BstAPI GCANNNNNTGC 1 cut(s) 1486
BstAUI TGTACA 2 cut(s) 820, 1423
BstBAI YACGTR 2 cut(s) 1316, 1766
BstC8I GCNNGC 7 cut(s) 72, 163, 445, 862, 1015, 1088, 1930
BstDEI CTNAG 4 cut(s) 963, 1443, 2035, 2280
BstDSI CCRYGG 1 cut(s) 2656
BstFNI CGCG 1 cut(s) 2166
BstHHI GCGC 2 cut(s) 1041, 1934
BstMAI GTCTC 6 cut(s) 950, 1074, 1384, 1660, 1991, 2586
BstMWI GCNNNNNNNGC 9 cut(s) 104, 107, 179, 267, 1083, 1486, 1880, 2065, 2716
BstNI CCWGG 1 cut(s) 1007
BstNSI RCATGY 2 cut(s) 853, 1932
BstSCI CCNGG 1 cut(s) 1005
BstSFI CTRYAG 2 cut(s) 1617, 2112
BstUI CGCG 1 cut(s) 2166
BstV2I GAAGAC 3 cut(s) 374, 1696, 2766
BstX2I RGATCY 4 cut(s) 1675, 2294, 2521, 2612
BstXI CCANNNNNNTGG 2 cut(s) 1535, 2201
BstYI RGATCY 4 cut(s) 1675, 2294, 2521, 2612
Bsu36I CCTNAGG 1 cut(s) 963
BsuRI GGCC 8 cut(s) 236, 545, 742, 2243, 2403, 2463, 2671, 2741
BtgI CCRYGG 1 cut(s) 2656
BtrI CACGTC 1 cut(s) 759
BtsI GCAGTG 5 cut(s) 93, 454, 1614, 1837, 2416
BtsIMutI CAGTG 6 cut(s) 93, 454, 1614, 1837, 2143, 2416
BtuMI TCGCGA 1 cut(s) 2166
BveI ACCTGC 1 cut(s) 682
Cac8I GCNNGC 7 cut(s) 72, 163, 445, 862, 1015, 1088, 1930
CciI TCATGA 1 cut(s) 883
CfoI GCGC 2 cut(s) 1041, 1934
Cfr10I RCCGGY 1 cut(s) 2393
Cfr13I GGNCC 3 cut(s) 518, 1159, 1355
CseI GACGC 1 cut(s) 785
Csp6I GTAC 9 cut(s) 13, 50, 709, 821, 942, 1424, 1857, 2371, 2397
CspAI ACCGGT 1 cut(s) 2393
CviAII CATG 9 cut(s) 323, 850, 884, 901, 1486, 1547, 1929, 2667, 2686
CviQI GTAC 9 cut(s) 13, 50, 709, 821, 942, 1424, 1857, 2371, 2397
DdeI CTNAG 4 cut(s) 963, 1443, 2035, 2280
DraIII CACNNNGTG 1 cut(s) 1769
DriI GACNNNNNGTC 1 cut(s) 2210
EaeI YGGCCR 2 cut(s) 543, 2461
Eam1104I CTCTTC 7 cut(s) 75, 481, 599, 882, 2279, 2361, 2718
Eam1105I GACNNNNNGTC 1 cut(s) 2210
EarI CTCTTC 7 cut(s) 75, 481, 599, 882, 2279, 2361, 2718
EciI GGCGGA 1 cut(s) 2055
Eco130I CCWWGG 5 cut(s) 347, 1189, 1809, 2130, 2742
Eco24I GRGCYC 2 cut(s) 2431, 2693
Eco31I GGTCTC 2 cut(s) 1660, 2586
Eco47I GGWCC 3 cut(s) 518, 1159, 1355
Eco57I CTGAAG 4 cut(s) 99, 497, 1101, 2699
Eco72I CACGTG 2 cut(s) 1316, 1766
Eco81I CCTNAGG 1 cut(s) 963
Eco88I CYCGRG 1 cut(s) 990
EcoO109I RGGNCCY 1 cut(s) 1355
EcoRI GAATTC 1 cut(s) 1254
EcoRII CCWGG 1 cut(s) 1005
EcoT14I CCWWGG 5 cut(s) 347, 1189, 1809, 2130, 2742
EcoT38I GRGCYC 2 cut(s) 2431, 2693
ErhI CCWWGG 5 cut(s) 347, 1189, 1809, 2130, 2742
FaeI CATG 9 cut(s) 326, 853, 887, 904, 1489, 1550, 1932, 2670, 2689
FalI AAGNNNNNCTT 2 cut(s) 1074, 1106
FaqI GGGAC 2 cut(s) 531, 1172
FatI CATG 9 cut(s) 322, 849, 883, 900, 1485, 1546, 1928, 2666, 2685
FauI CCCGC 1 cut(s) 1006
FbaI TGATCA 3 cut(s) 331, 1543, 2571
FriOI GRGCYC 2 cut(s) 2431, 2693
GlaI GCGC 2 cut(s) 1040, 1933
GsuI CTGGAG 2 cut(s) 29, 2177
HaeIII GGCC 8 cut(s) 236, 545, 742, 2243, 2403, 2463, 2671, 2741
HapII CCGG 5 cut(s) 206, 521, 893, 2394, 2546
HgaI GACGC 1 cut(s) 785
HhaI GCGC 2 cut(s) 1041, 1934
Hin1II CATG 9 cut(s) 326, 853, 887, 904, 1489, 1550, 1932, 2670, 2689
Hin6I GCGC 2 cut(s) 1039, 1932
HinP1I GCGC 2 cut(s) 1039, 1932
HincII GTYRAC 2 cut(s) 1630, 2306
HindII GTYRAC 2 cut(s) 1630, 2306
HinfI GANTC 9 cut(s) 83, 137, 212, 293, 314, 628, 958, 1906, 2093
HpaI GTTAAC 1 cut(s) 1630
HpaII CCGG 5 cut(s) 206, 521, 893, 2394, 2546
Hpy166II GTNNAC 8 cut(s) 711, 756, 944, 1505, 1630, 1921, 2252, 2306
Hpy188III TCNNGA 8 cut(s) 884, 1259, 1295, 1358, 1652, 2165, 2194, 2381
Hpy8I GTNNAC 8 cut(s) 711, 756, 944, 1505, 1630, 1921, 2252, 2306
Hpy99I CGWCG 1 cut(s) 2768
HpyCH4III ACNGT 9 cut(s) 503, 640, 829, 1378, 1423, 1428, 1869, 2147, 2700
HpyCH4IV ACGT 7 cut(s) 120, 758, 841, 1315, 1765, 2010, 2605
HpyF10VI GCNNNNNNNGC 9 cut(s) 104, 107, 179, 267, 1083, 1486, 1880, 2065, 2716
HpyF3I CTNAG 4 cut(s) 963, 1443, 2035, 2280
HpySE526I ACGT 7 cut(s) 120, 758, 841, 1315, 1765, 2010, 2605
Hsp92II CATG 9 cut(s) 326, 853, 887, 904, 1489, 1550, 1932, 2670, 2689
HspAI GCGC 2 cut(s) 1039, 1932
Ksp22I TGATCA 3 cut(s) 331, 1543, 2571
KspAI GTTAAC 1 cut(s) 1630
LguI GCTCTTC 2 cut(s) 599, 882
LmnI GCTCC 2 cut(s) 809, 2383
MaeII ACGT 7 cut(s) 120, 758, 841, 1315, 1765, 2010, 2605
MaeIII GTNAC 7 cut(s) 116, 470, 640, 759, 1490, 1910, 2389
MfeI CAATTG 1 cut(s) 1529
MflI RGATCY 4 cut(s) 1675, 2294, 2521, 2612
MhlI GDGCHC 2 cut(s) 2431, 2693
MlsI TGGCCA 1 cut(s) 545
MluNI TGGCCA 1 cut(s) 545
MlyI GAGTC 5 cut(s) 92, 131, 323, 952, 2087
MmeI TCCRAC 1 cut(s) 2338
Mox20I TGGCCA 1 cut(s) 545
MroXI GAANNNNTTC 3 cut(s) 1469, 2081, 2139
MscI TGGCCA 1 cut(s) 545
MseI TTAA 9 cut(s) 59, 231, 909, 1430, 1629, 1794, 2172, 2216, 2337
MslI CAYNNNNRTG 4 cut(s) 60, 1500, 2409, 2546
Msp20I TGGCCA 1 cut(s) 545
MspA1I CMGCKG 1 cut(s) 77
MspCI CTTAAG 1 cut(s) 2171
MspI CCGG 5 cut(s) 206, 521, 893, 2394, 2546
MspR9I CCNGG 1 cut(s) 1007
MunI CAATTG 1 cut(s) 1529
Mva1269I GAATGC 2 cut(s) 693, 2541
MvaI CCWGG 1 cut(s) 1007
MvnI CGCG 1 cut(s) 2166
MwoI GCNNNNNNNGC 9 cut(s) 104, 107, 179, 267, 1083, 1486, 1880, 2065, 2716
NheI GCTAGC 1 cut(s) 860
NlaIII CATG 9 cut(s) 326, 853, 887, 904, 1489, 1550, 1932, 2670, 2689
NlaIV GGNNCC 5 cut(s) 519, 805, 1160, 2362, 2614
NmuCI GTSAC 4 cut(s) 116, 640, 759, 1490
NruI TCGCGA 1 cut(s) 2166
NspI RCATGY 2 cut(s) 853, 1932
OliI CACNNNNGTG 1 cut(s) 2409
PaeI GCATGC 1 cut(s) 1932
PagI TCATGA 1 cut(s) 883
PciSI GCTCTTC 2 cut(s) 599, 882
PcsI WCGNNNNNNNCGW 2 cut(s) 158, 2361
PctI GAATGC 2 cut(s) 693, 2541
PdmI GAANNNNTTC 3 cut(s) 1469, 2081, 2139
PfeI GAWTC 4 cut(s) 212, 293, 628, 1906
PflMI CCANNNNNTGG 1 cut(s) 1843
PinAI ACCGGT 1 cut(s) 2393
PleI GAGTC 5 cut(s) 91, 131, 322, 952, 2087
PmaCI CACGTG 2 cut(s) 1316, 1766
PmlI CACGTG 2 cut(s) 1316, 1766
PpsI GAGTC 5 cut(s) 91, 131, 322, 952, 2087
Ppu21I YACGTR 2 cut(s) 1316, 1766
PpuMI RGGWCCY 1 cut(s) 1355
PsiI TTATAA 1 cut(s) 2264
Psp5II RGGWCCY 1 cut(s) 1355
Psp6I CCWGG 1 cut(s) 1005
PspCI CACGTG 2 cut(s) 1316, 1766
PspGI CCWGG 1 cut(s) 1005
PspN4I GGNNCC 5 cut(s) 519, 805, 1160, 2362, 2614
PspPI GGNCC 3 cut(s) 518, 1159, 1355
PspPPI RGGWCCY 1 cut(s) 1355
PstI CTGCAG 2 cut(s) 1621, 2116
PsuI RGATCY 4 cut(s) 1675, 2294, 2521, 2612
PvuII CAGCTG 1 cut(s) 77
RruI TCGCGA 1 cut(s) 2166
RsaI GTAC 9 cut(s) 14, 51, 710, 822, 943, 1425, 1858, 2372, 2398
RsaNI GTAC 9 cut(s) 13, 50, 709, 821, 942, 1424, 1857, 2371, 2397
RseI CAYNNNNRTG 4 cut(s) 60, 1500, 2409, 2546
SapI GCTCTTC 2 cut(s) 599, 882
SaqAI TTAA 9 cut(s) 59, 231, 909, 1430, 1629, 1794, 2172, 2216, 2337
Sau96I GGNCC 3 cut(s) 518, 1159, 1355
ScaI AGTACT 1 cut(s) 51
SchI GAGTC 5 cut(s) 92, 131, 323, 952, 2087
ScrFI CCNGG 1 cut(s) 1007
SduI GDGCHC 2 cut(s) 2431, 2693
SfcI CTRYAG 2 cut(s) 1617, 2112
SinI GGWCC 3 cut(s) 518, 1159, 1355
SmiMI CAYNNNNRTG 4 cut(s) 60, 1500, 2409, 2546
SmlI CTYRAG 2 cut(s) 1663, 2171
SmoI CTYRAG 2 cut(s) 1663, 2171
SphI GCATGC 1 cut(s) 1932
SsiI CCGC 6 cut(s) 585, 1013, 1162, 2040, 2309, 2464
SspI AATATT 2 cut(s) 1514, 2185
StyD4I CCNGG 1 cut(s) 1005
StyI CCWWGG 5 cut(s) 347, 1189, 1809, 2130, 2742
TaaI ACNGT 9 cut(s) 503, 640, 829, 1378, 1423, 1428, 1869, 2147, 2700
TaiI ACGT 7 cut(s) 123, 761, 844, 1318, 1768, 2013, 2608
TaqI TCGA 1 cut(s) 781
TatI WGTACW 7 cut(s) 12, 49, 708, 820, 941, 1423, 2370
TauI GCSGC 1 cut(s) 2466
TfiI GAWTC 4 cut(s) 212, 293, 628, 1906
Tru1I TTAA 9 cut(s) 59, 231, 909, 1430, 1629, 1794, 2172, 2216, 2337
Tru9I TTAA 9 cut(s) 59, 231, 909, 1430, 1629, 1794, 2172, 2216, 2337
TscAI CASTG 6 cut(s) 100, 454, 1621, 1837, 2150, 2416
TseFI GTSAC 4 cut(s) 116, 640, 759, 1490
Tsp45I GTSAC 4 cut(s) 116, 640, 759, 1490
TspDTI ATGAA 9 cut(s) 44, 552, 900, 917, 1507, 1679, 1892, 1980, 2090
TspGWI ACGGA 5 cut(s) 167, 758, 1319, 2645, 2669
TspRI CASTG 6 cut(s) 100, 454, 1621, 1837, 2150, 2416
Van91I CCANNNNNTGG 1 cut(s) 1843
Vha464I CTTAAG 1 cut(s) 2171
VpaK11BI GGWCC 3 cut(s) 518, 1159, 1355
XapI RAATTY 7 cut(s) 129, 1254, 1323, 1465, 2078, 2347, 2779
XbaI TCTAGA 1 cut(s) 1294
XceI RCATGY 2 cut(s) 853, 1932
XcmI CCANNNNNNNNNTGG 2 cut(s) 1677, 1807
XmnI GAANNNNTTC 3 cut(s) 1469, 2081, 2139
ZrmI AGTACT 1 cut(s) 51
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.