FvH4_2g17603

FAR1 DNA-binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0009654
Physical Location & Seq
Forward (+)
15140164 .. 15142289
2126 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g17603.t1

Sequence Viewer

Length: 738 bp
ATGGAAACCGAGAGTTACAACAATATAAACAACAACCCATTTGATTCAGATGAGAGCCAAAGTTGTGAGCTTCCAAATGACATTGATTTATGCTCAGGTGAAGTAGATAAGATTATACAACAGTCTAATGGAAGCTCACATTTGATGGGTAATCCGATAGAGCCTTACATAGGAATGGAGTTCAAGTCTAGAGACGGTGCTCGAGAGTTTTACATTGCTTATGGCAGGCACACTGGGTTTACAGTTAGGATTCATCACAACCGTCGTTCGAGGATGAATAACATGGTGATTGGCCAGGATTTTGTTTGCTCGAAAGAGGGTTTTCGTGACAAGAAGTATGTGTATAGGGACAATAGGGTTCTCCCTCCACCACCTGTTACAAGAGAAGGTTGTGCTGCAATGCTGAGGGTAGCTTTGAGAGATGGGGACAAGTGGGTTGTTACCAAGTTTGTGAAGGAGCACAATCACACATTAATGTCTCCGAGTAAAGTTCCATGGCGAGGATCTGGGAAAACCTTGATCAATGAGGATGAGAAGGATCGGAAAATTAGGGAGCTGACCATTGAACTGAGCAATGAGAGACAGCGATGTAAGCGAAGATGTGCTGCTTATCAAGACCAACTGAATAGGCTTTTGAAAGATATCCAAGAGCACAGTGATCACTTGTCAGAAAGAGTTCAAGATATAGTGAAGAACATAAGAGAACTAGAGAGTGAGCAGTATGAAGACTCAGAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAR1

Protein Analysis

246

Amino Acids

28.59

Weight (kDa)

6.27

Isoelectric Point (pI)

53.14

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FAR1 PF03101 69 - 159 1.8e-25 FAR1 DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 511, 546
AcoI YGGCCR 1 cut(s) 292
AfiI CCNNNNNNNGG 2 cut(s) 170, 500
AgsI TTSAA 4 cut(s) 184, 566, 637, 680
AjnI CCWGG 1 cut(s) 294
AluBI AGCT 4 cut(s) 70, 135, 413, 556
AluI AGCT 4 cut(s) 70, 135, 413, 556
Alw21I GWGCWC 3 cut(s) 202, 462, 654
Alw26I GTCTC 3 cut(s) 186, 483, 574
AlwI GGATC 2 cut(s) 511, 546
Ama87I CYCGRG 1 cut(s) 201
AoxI GGCC 1 cut(s) 292
ApeKI GCWGC 2 cut(s) 395, 605
AseI ATTAAT 1 cut(s) 473
Asp700I GAANNNNTTC 1 cut(s) 675
AsuHPI GGTGA 2 cut(s) 110, 298
AvaI CYCGRG 1 cut(s) 201
BalI TGGCCA 1 cut(s) 294
BbsI GAAGAC 1 cut(s) 732
Bbv12I GWGCWC 3 cut(s) 202, 462, 654
BbvCI CCTCAGC 1 cut(s) 404
BbvI GCAGC 2 cut(s) 382, 592
BccI CCATC 2 cut(s) 139, 416
BciT130I CCWGG 1 cut(s) 296
BclI TGATCA 2 cut(s) 519, 658
BcoDI GTCTC 3 cut(s) 186, 483, 574
BfaI CTAG 2 cut(s) 189, 707
BisI GCNGC 2 cut(s) 396, 606
BlsI GCNGC 2 cut(s) 397, 607
Bme1390I CCNGG 1 cut(s) 296
BmeT110I CYCGRG 1 cut(s) 201
BmrFI CCNGG 1 cut(s) 296
BmrI ACTGGG 1 cut(s) 243
BmuI ACTGGG 1 cut(s) 243
BpiI GAAGAC 1 cut(s) 732
Bpu10I CCTNAGC 2 cut(s) 94, 404
BsaJI CCNNGG 1 cut(s) 494
BsaXI ACNNNNNCTCC 2 cut(s) 170, 200
Bsc4I CCNNNNNNNGG 2 cut(s) 170, 500
Bse1I ACTGG 1 cut(s) 238
Bse3DI GCAATG 3 cut(s) 213, 405, 580
BseBI CCWGG 1 cut(s) 296
BseDI CCNNGG 1 cut(s) 494
BseGI GGATG 2 cut(s) 279, 535
BseLI CCNNNNNNNGG 2 cut(s) 170, 500
BseMI GCAATG 3 cut(s) 213, 405, 580
BseMII CTCAG 3 cut(s) 108, 395, 560
BseNI ACTGG 1 cut(s) 238
BseXI GCAGC 2 cut(s) 382, 592
BshFI GGCC 1 cut(s) 294
BsiHKAI GWGCWC 3 cut(s) 202, 462, 654
BsiHKCI CYCGRG 1 cut(s) 201
BslFI GGGAC 2 cut(s) 362, 440
BslI CCNNNNNNNGG 2 cut(s) 170, 500
BsmAI GTCTC 3 cut(s) 186, 483, 574
BsmBI CGTCTC 1 cut(s) 186
BsmFI GGGAC 2 cut(s) 362, 440
BsnI GGCC 1 cut(s) 294
BsoBI CYCGRG 1 cut(s) 201
Bsp1286I GDGCHC 3 cut(s) 202, 462, 654
Bsp143I GATC 4 cut(s) 503, 519, 538, 658
Bsp19I CCATGG 1 cut(s) 494
BspANI GGCC 1 cut(s) 294
BspCNI CTCAG 3 cut(s) 107, 396, 561
BspPI GGATC 2 cut(s) 511, 546
BsrDI GCAATG 3 cut(s) 213, 405, 580
BsrI ACTGG 1 cut(s) 238
BssECI CCNNGG 1 cut(s) 494
BssMI GATC 4 cut(s) 503, 519, 538, 658
BssT1I CCWWGG 1 cut(s) 494
Bst2UI CCWGG 1 cut(s) 296
Bst4CI ACNGT 5 cut(s) 123, 197, 244, 263, 656
BstC8I GCNNGC 1 cut(s) 227
BstDEI CTNAG 4 cut(s) 94, 404, 569, 730
BstDSI CCRYGG 1 cut(s) 494
BstENI CCTNNNNNAGG 1 cut(s) 168
BstF5I GGATG 2 cut(s) 279, 535
BstKTI GATC 4 cut(s) 506, 522, 541, 661
BstMAI GTCTC 3 cut(s) 186, 483, 574
BstMBI GATC 4 cut(s) 503, 519, 538, 658
BstMWI GCNNNNNNNGC 1 cut(s) 592
BstNI CCWGG 1 cut(s) 296
BstSCI CCNGG 1 cut(s) 294
BstV1I GCAGC 2 cut(s) 382, 592
BstV2I GAAGAC 1 cut(s) 732
BstX2I RGATCY 1 cut(s) 503
BstYI RGATCY 1 cut(s) 503
BsuRI GGCC 1 cut(s) 294
BtgI CCRYGG 1 cut(s) 494
BtgZI GCGATG 1 cut(s) 601
BtsCI GGATG 2 cut(s) 279, 535
BtsIMutI CAGTG 2 cut(s) 231, 661
Cac8I GCNNGC 1 cut(s) 227
CviAII CATG 2 cut(s) 283, 495
CviJI RGCY 8 cut(s) 57, 70, 135, 163, 294, 413, 556, 631
CviKI_1 RGCY 8 cut(s) 57, 70, 135, 163, 294, 413, 556, 631
DdeI CTNAG 4 cut(s) 94, 404, 569, 730
DpnI GATC 4 cut(s) 505, 521, 540, 660
DpnII GATC 4 cut(s) 503, 519, 538, 658
EaeI YGGCCR 1 cut(s) 292
Eco130I CCWWGG 1 cut(s) 494
Eco32I GATATC 1 cut(s) 643
Eco88I CYCGRG 1 cut(s) 201
EcoNI CCTNNNNNAGG 1 cut(s) 168
EcoRII CCWGG 1 cut(s) 294
EcoRV GATATC 1 cut(s) 643
EcoT14I CCWWGG 1 cut(s) 494
ErhI CCWWGG 1 cut(s) 494
Esp3I CGTCTC 1 cut(s) 186
FaeI CATG 2 cut(s) 286, 498
FaqI GGGAC 2 cut(s) 362, 440
FatI CATG 2 cut(s) 282, 494
FbaI TGATCA 2 cut(s) 519, 658
Fnu4HI GCNGC 2 cut(s) 396, 606
FokI GGATG 2 cut(s) 286, 542
Fsp4HI GCNGC 2 cut(s) 396, 606
FspBI CTAG 2 cut(s) 189, 707
GluI GCNGC 2 cut(s) 396, 606
HaeIII GGCC 1 cut(s) 294
Hin1II CATG 2 cut(s) 286, 498
HinfI GANTC 3 cut(s) 44, 250, 728
HphI GGTGA 2 cut(s) 110, 298
Hpy166II GTNNAC 1 cut(s) 240
Hpy188I TCNGA 6 cut(s) 49, 156, 483, 543, 670, 733
Hpy188III TCNNGA 5 cut(s) 189, 203, 326, 614, 680
Hpy8I GTNNAC 1 cut(s) 240
Hpy99I CGWCG 1 cut(s) 267
HpyAV CCTTC 3 cut(s) 380, 448, 529
HpyCH4III ACNGT 5 cut(s) 123, 197, 244, 263, 656
HpyCH4V TGCA 1 cut(s) 398
HpyF10VI GCNNNNNNNGC 1 cut(s) 592
HpyF3I CTNAG 4 cut(s) 94, 404, 569, 730
Hsp92II CATG 2 cut(s) 286, 498
Ksp22I TGATCA 2 cut(s) 519, 658
Kzo9I GATC 4 cut(s) 503, 519, 538, 658
LmnI GCTCC 2 cut(s) 457, 553
LpnPI CCDG 7 cut(s) 81, 211, 219, 281, 308, 387, 492
Lsp1109I GCAGC 2 cut(s) 382, 592
MaeI CTAG 2 cut(s) 189, 707
MaeIII GTNAC 4 cut(s) 14, 326, 376, 439
MalI GATC 4 cut(s) 505, 521, 540, 660
MboI GATC 4 cut(s) 503, 519, 538, 658
MboII GAAGA 3 cut(s) 609, 703, 737
MflI RGATCY 1 cut(s) 503
MhlI GDGCHC 3 cut(s) 202, 462, 654
MlsI TGGCCA 1 cut(s) 294
MluCI AATT 1 cut(s) 546
MluNI TGGCCA 1 cut(s) 294
MlyI GAGTC 1 cut(s) 722
MnlI CCTC 6 cut(s) 264, 310, 375, 399, 494, 520
Mox20I TGGCCA 1 cut(s) 294
MroXI GAANNNNTTC 1 cut(s) 675
MscI TGGCCA 1 cut(s) 294
MseI TTAA 1 cut(s) 473
MslI CAYNNNNRTG 2 cut(s) 173, 473
Msp20I TGGCCA 1 cut(s) 294
MspR9I CCNGG 1 cut(s) 296
MvaI CCWGG 1 cut(s) 296
MwoI GCNNNNNNNGC 1 cut(s) 592
NcoI CCATGG 1 cut(s) 494
NdeII GATC 4 cut(s) 503, 519, 538, 658
NlaIII CATG 2 cut(s) 286, 498
NmuCI GTSAC 1 cut(s) 326
PaeR7I CTCGAG 1 cut(s) 201
PdmI GAANNNNTTC 1 cut(s) 675
PfeI GAWTC 2 cut(s) 44, 250
PkrI GCNGC 2 cut(s) 397, 607
PleI GAGTC 1 cut(s) 722
PpsI GAGTC 1 cut(s) 722
PshBI ATTAAT 1 cut(s) 473
Psp6I CCWGG 1 cut(s) 294
PspGI CCWGG 1 cut(s) 294
PsuI RGATCY 1 cut(s) 503
RseI CAYNNNNRTG 2 cut(s) 173, 473
SaqAI TTAA 1 cut(s) 473
SatI GCNGC 2 cut(s) 396, 606
Sau3AI GATC 4 cut(s) 503, 519, 538, 658
SchI GAGTC 1 cut(s) 722
ScrFI CCNGG 1 cut(s) 296
SduI GDGCHC 3 cut(s) 202, 462, 654
SetI ASST 8 cut(s) 72, 100, 137, 376, 391, 415, 518, 558
Sfr274I CTCGAG 1 cut(s) 201
SlaI CTCGAG 1 cut(s) 201
SmiMI CAYNNNNRTG 2 cut(s) 173, 473
SmlI CTYRAG 1 cut(s) 201
SmoI CTYRAG 1 cut(s) 201
Sse9I AATT 1 cut(s) 546
SspMI CTAG 2 cut(s) 189, 707
StyD4I CCNGG 1 cut(s) 294
StyI CCWWGG 1 cut(s) 494
TaaI ACNGT 5 cut(s) 123, 197, 244, 263, 656
TaqI TCGA 3 cut(s) 202, 269, 311
TasI AATT 1 cut(s) 546
TfiI GAWTC 2 cut(s) 44, 250
Tru1I TTAA 1 cut(s) 473
Tru9I TTAA 1 cut(s) 473
TscAI CASTG 2 cut(s) 238, 661
TseFI GTSAC 1 cut(s) 326
TseI GCWGC 2 cut(s) 395, 605
Tsp45I GTSAC 1 cut(s) 326
TspDTI ATGAA 3 cut(s) 242, 290, 738
TspRI CASTG 2 cut(s) 238, 661
VspI ATTAAT 1 cut(s) 473
XagI CCTNNNNNAGG 1 cut(s) 168
XbaI TCTAGA 1 cut(s) 188
XhoI CTCGAG 1 cut(s) 201
XmnI GAANNNNTTC 1 cut(s) 675
XspI CTAG 2 cut(s) 189, 707
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.