Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0009654

Physical Location & Seq

Genomic Coordinates Reverse (-)

18541305 .. 18547430

Gene Structure 6126 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G195700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 774 bp

ATGGATCACCAATCTGTTCATGGGTTTGATTCAGACGAAAGTGACTTAGATATGCATGCTGAAACCTATGAAAATAATGAAGGGATGGAAGATGTGCTTTCTGAGAACCTGGACTTGTGTTTAGATGAAAAGGAAGGGATAGCAGAACCATCAGCAGATCTGCCTATGAACATAGAAGCTTTAGAACCAAACATAGGCATGGAGTTCAACTCAAGAGATGAAGCAAGAGAATTTTATGTTGCATATGGCAGACGATCTGGTTTTACTGTACGGATACACCACAACCGTCGCTCACGAGTAAACAATCAGGTTATTGGTCAAGATTTTGTTTGCTCGAAAGAAGGCTTTCGTGCAAAAAAGTATGTACACAGAAAAGACAGAGTTCTTCCTCCACCGCCAGTAACCCGTGAGGGCTGTCAAGCTATGATAAGGCTAGCTTTAAGGGATGGACTAAAGTGGGTAGTCACAAAATTTGTTAAAGAGCATAATCATAAACTAATGAGTCCCAGCAAGGTTCCATGGCGGGGATCAGGAAAGCACTTAGCAAGTGAGGATGAGAAGGATAAAAGAATCCGTGAACTATCCCTTGAGTTGTACAATGAGAGGCAAAAATGTAAGCGACGCTGCGCTGCATACGAAGAACAGTTAAATTTGATTTTGAAAGATTTGGAAAAACATACAGAGCACATGTCAAAAAAAGTGGCGGATATAGTTCAGAGCATAAGAGAGATTGAGGAGGAACAATCAGAGGACTCAGATAGCGGATGGACTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FAR1

Protein Analysis

258

Amino Acids

29.85

Weight (kDa)

5.63

Isoelectric Point (pI)

65.46

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009654)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g17603 FvH4_2g17603 FvH4_2g17603
malus_domestica	MD04G1041900.v1.1
prunus_persica	Prupe.1G195700_v2.0.a1 Prupe.1G195700_v2.0.a1 Prupe.8G188600_v2.0.a1
pyrus_communis	pycom04g03690 pycom13g28370 pycom275g00050
rosa_chinensis	RchiOBHm_Chr6g0282581
rosa_laevigata	RLG00000012884
rosa_multiflora	Rmu_co8454661.1_g000001 Rmu_sc0000283.1_g000004 Rmu_sc0005697.1_g000005
rosa_roxburghii	Rroxscaffold_7G00186250
rosa_rugosa	Rorug06G0147800
rosa_samantha	Rh6AG261000 Rh6BG264100 Rh6CG263300 Rh6DG255200
rosa_wichuraiana	Rw6G022570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	4 cut(s)	395, 523, 704, 762
AclWI	GGATC	2 cut(s)	12, 535
AcsI	RAATTY	3 cut(s)	230, 470, 649
AfaI	GTAC	3 cut(s)	270, 366, 596
AfiI	CCNNNNNNNGG	2 cut(s)	194, 524
AflIII	ACRYGT	1 cut(s)	687
AgsI	TTSAA	2 cut(s)	208, 661
AjnI	CCWGG	1 cut(s)	108
AluBI	AGCT	3 cut(s)	179, 422, 437
AluI	AGCT	3 cut(s)	179, 422, 437
Alw21I	GWGCWC	1 cut(s)	687
AlwI	GGATC	2 cut(s)	12, 535
ApeKI	GCWGC	2 cut(s)	624, 629
ApoI	RAATTY	3 cut(s)	230, 470, 649
Asp700I	GAANNNNTTC	1 cut(s)	345
AspLEI	GCGC	1 cut(s)	629
AsuNHI	GCTAGC	1 cut(s)	433
BauI	CACGAG	1 cut(s)	294
Bbv12I	GWGCWC	1 cut(s)	687
BbvI	GCAGC	2 cut(s)	611, 616
BccI	CCATC	4 cut(s)	79, 157, 440, 759
BciT130I	CCWGG	1 cut(s)	110
BciVI	GTATCC	1 cut(s)	267
BfaI	CTAG	1 cut(s)	434
BfuI	GTATCC	1 cut(s)	267
BglII	AGATCT	1 cut(s)	157
BisI	GCNGC	2 cut(s)	625, 630
BlsI	GCNGC	2 cut(s)	626, 631
Bme1390I	CCNGG	1 cut(s)	110
BmiI	GGNNCC	1 cut(s)	516
BmrFI	CCNGG	1 cut(s)	110
BmtI	GCTAGC	1 cut(s)	437
BplI	GAGNNNNNCTC	2 cut(s)	194, 226
BpuEI	CTTGAG	2 cut(s)	196, 608
BsaJI	CCNNGG	1 cut(s)	518
Bsc4I	CCNNNNNNNGG	2 cut(s)	194, 524
Bse1I	ACTGG	1 cut(s)	398
BseBI	CCWGG	1 cut(s)	110
BseDI	CCNNGG	1 cut(s)	518
BseGI	GGATG	4 cut(s)	90, 451, 559, 770
BseLI	CCNNNNNNNGG	2 cut(s)	194, 524
BseMII	CTCAG	2 cut(s)	93, 768
BseNI	ACTGG	1 cut(s)	398
BseRI	GAGGAG	1 cut(s)	749
BseXI	GCAGC	2 cut(s)	611, 616
BseYI	CCCAGC	1 cut(s)	506
BsiHKAI	GWGCWC	1 cut(s)	687
BslFI	GGGAC	1 cut(s)	489
BslI	CCNNNNNNNGG	2 cut(s)	194, 524
BsmFI	GGGAC	1 cut(s)	489
Bsp1286I	GDGCHC	1 cut(s)	687
Bsp1407I	TGTACA	2 cut(s)	364, 594
Bsp143I	GATC	4 cut(s)	4, 157, 254, 527
Bsp19I	CCATGG	1 cut(s)	518
BspACI	CCGC	4 cut(s)	395, 523, 704, 762
BspCNI	CTCAG	2 cut(s)	94, 767
BspLI	GGNNCC	1 cut(s)	516
BspOI	GCTAGC	1 cut(s)	437
BspPI	GGATC	2 cut(s)	12, 535
BsrGI	TGTACA	2 cut(s)	364, 594
BsrI	ACTGG	1 cut(s)	398
BssECI	CCNNGG	1 cut(s)	518
BssMI	GATC	4 cut(s)	4, 157, 254, 527
BssSI	CACGAG	1 cut(s)	294
BssT1I	CCWWGG	1 cut(s)	518
Bst2BI	CACGAG	1 cut(s)	294
Bst2UI	CCWGG	1 cut(s)	110
Bst4CI	ACNGT	3 cut(s)	268, 287, 645
BstAUI	TGTACA	2 cut(s)	364, 594
BstC8I	GCNNGC	2 cut(s)	57, 435
BstDEI	CTNAG	5 cut(s)	46, 102, 541, 754, 771
BstDSI	CCRYGG	1 cut(s)	518
BstF5I	GGATG	4 cut(s)	90, 451, 559, 770
BstHHI	GCGC	1 cut(s)	629
BstKTI	GATC	4 cut(s)	7, 160, 257, 530
BstMBI	GATC	4 cut(s)	4, 157, 254, 527
BstNI	CCWGG	1 cut(s)	110
BstNSI	RCATGY	2 cut(s)	59, 691
BstSCI	CCNGG	1 cut(s)	108
BstV1I	GCAGC	2 cut(s)	611, 616
BstX2I	RGATCY	1 cut(s)	157
BstYI	RGATCY	1 cut(s)	157
BsuI	GTATCC	1 cut(s)	267
BtgI	CCRYGG	1 cut(s)	518
BtsCI	GGATG	4 cut(s)	90, 451, 559, 770
Cac8I	GCNNGC	2 cut(s)	57, 435
CfoI	GCGC	1 cut(s)	629
CseI	GACGC	1 cut(s)	630
Csp6I	GTAC	3 cut(s)	269, 365, 595
CspCI	CAANNNNNGTGG	2 cut(s)	681, 716
CviAII	CATG	5 cut(s)	20, 56, 199, 519, 688
CviJI	RGCY	6 cut(s)	179, 345, 414, 422, 433, 437
CviKI_1	RGCY	6 cut(s)	179, 345, 414, 422, 433, 437
CviQI	GTAC	3 cut(s)	269, 365, 595
DdeI	CTNAG	5 cut(s)	46, 102, 541, 754, 771
DpnI	GATC	4 cut(s)	6, 159, 256, 529
DpnII	GATC	4 cut(s)	4, 157, 254, 527
EciI	GGCGGA	1 cut(s)	719
Eco130I	CCWWGG	1 cut(s)	518
EcoRII	CCWGG	1 cut(s)	108
EcoT14I	CCWWGG	1 cut(s)	518
EcoT22I	ATGCAT	1 cut(s)	57
ErhI	CCWWGG	1 cut(s)	518
FaeI	CATG	5 cut(s)	23, 59, 202, 522, 691
FalI	AAGNNNNNCTT	4 cut(s)	81, 113, 421, 453
FaqI	GGGAC	1 cut(s)	489
FatI	CATG	5 cut(s)	19, 55, 198, 518, 687
FauI	CCCGC	1 cut(s)	516
FauNDI	CATATG	1 cut(s)	244
Fnu4HI	GCNGC	2 cut(s)	625, 630
FokI	GGATG	3 cut(s)	97, 458, 566
Fsp4HI	GCNGC	2 cut(s)	625, 630
FspBI	CTAG	1 cut(s)	434
GlaI	GCGC	1 cut(s)	628
GluI	GCNGC	2 cut(s)	625, 630
GsaI	CCCAGC	1 cut(s)	510
HgaI	GACGC	1 cut(s)	630
HhaI	GCGC	1 cut(s)	629
Hin1II	CATG	5 cut(s)	23, 59, 202, 522, 691
Hin6I	GCGC	1 cut(s)	627
HinP1I	GCGC	1 cut(s)	627
HindIII	AAGCTT	1 cut(s)	177
HinfI	GANTC	4 cut(s)	29, 502, 570, 752
Hpy166II	GTNNAC	3 cut(s)	301, 367, 578
Hpy188I	TCNGA	5 cut(s)	34, 103, 717, 748, 757
Hpy188III	TCNNGA	4 cut(s)	213, 294, 320, 531
Hpy8I	GTNNAC	3 cut(s)	301, 367, 578
Hpy99I	CGWCG	2 cut(s)	291, 624
HpyAV	CCTTC	4 cut(s)	74, 128, 335, 553
HpyCH4III	ACNGT	3 cut(s)	268, 287, 645
HpyCH4V	TGCA	4 cut(s)	55, 242, 353, 632
HpyF3I	CTNAG	5 cut(s)	46, 102, 541, 754, 771
Hsp92II	CATG	5 cut(s)	23, 59, 202, 522, 691
HspAI	GCGC	1 cut(s)	627
Kzo9I	GATC	4 cut(s)	4, 157, 254, 527
LpnPI	CCDG	7 cut(s)	95, 122, 243, 293, 411, 516, 520
Lsp1109I	GCAGC	2 cut(s)	611, 616
MaeI	CTAG	1 cut(s)	434
MaeIII	GTNAC	3 cut(s)	41, 400, 463
MalI	GATC	4 cut(s)	6, 159, 256, 529
MboI	GATC	4 cut(s)	4, 157, 254, 527
MboII	GAAGA	3 cut(s)	101, 377, 650
MflI	RGATCY	1 cut(s)	157
MhlI	GDGCHC	1 cut(s)	687
MluCI	AATT	3 cut(s)	230, 470, 649
MlyI	GAGTC	2 cut(s)	511, 746
MnlI	CCTC	7 cut(s)	399, 403, 544, 597, 727, 730, 742
Mph1103I	ATGCAT	1 cut(s)	57
MroXI	GAANNNNTTC	1 cut(s)	345
MseI	TTAA	3 cut(s)	440, 477, 647
MslI	CAYNNNNRTG	1 cut(s)	197
MspR9I	CCNGG	1 cut(s)	110
MvaI	CCWGG	1 cut(s)	110
NcoI	CCATGG	1 cut(s)	518
NdeI	CATATG	1 cut(s)	244
NdeII	GATC	4 cut(s)	4, 157, 254, 527
NheI	GCTAGC	1 cut(s)	433
NlaIII	CATG	5 cut(s)	23, 59, 202, 522, 691
NlaIV	GGNNCC	1 cut(s)	516
NmuCI	GTSAC	2 cut(s)	41, 463
NsiI	ATGCAT	1 cut(s)	57
NspI	RCATGY	2 cut(s)	59, 691
PaeI	GCATGC	1 cut(s)	59
PciI	ACATGT	1 cut(s)	687
PdmI	GAANNNNTTC	1 cut(s)	345
PfeI	GAWTC	2 cut(s)	29, 570
PkrI	GCNGC	2 cut(s)	626, 631
PleI	GAGTC	2 cut(s)	510, 746
PpsI	GAGTC	2 cut(s)	510, 746
PscI	ACATGT	1 cut(s)	687
Psp6I	CCWGG	1 cut(s)	108
PspFI	CCCAGC	1 cut(s)	506
PspGI	CCWGG	1 cut(s)	108
PspN4I	GGNNCC	1 cut(s)	516
PsuI	RGATCY	1 cut(s)	157
RsaI	GTAC	3 cut(s)	270, 366, 596
RsaNI	GTAC	3 cut(s)	269, 365, 595
RseI	CAYNNNNRTG	1 cut(s)	197
SaqAI	TTAA	3 cut(s)	440, 477, 647
SatI	GCNGC	2 cut(s)	625, 630
Sau3AI	GATC	4 cut(s)	4, 157, 254, 527
SchI	GAGTC	2 cut(s)	511, 746
ScrFI	CCNGG	1 cut(s)	110
SduI	GDGCHC	1 cut(s)	687
SetI	ASST	7 cut(s)	68, 111, 181, 312, 424, 439, 516
SmiMI	CAYNNNNRTG	1 cut(s)	197
SmlI	CTYRAG	2 cut(s)	211, 587
SmoI	CTYRAG	2 cut(s)	211, 587
SphI	GCATGC	1 cut(s)	59
Sse9I	AATT	3 cut(s)	230, 470, 649
SsiI	CCGC	4 cut(s)	395, 523, 704, 762
SspMI	CTAG	1 cut(s)	434
StyD4I	CCNGG	1 cut(s)	108
StyI	CCWWGG	1 cut(s)	518
TaaI	ACNGT	3 cut(s)	268, 287, 645
TaqI	TCGA	1 cut(s)	335
TasI	AATT	3 cut(s)	230, 470, 649
TatI	WGTACW	2 cut(s)	364, 594
TfiI	GAWTC	2 cut(s)	29, 570
Tru1I	TTAA	3 cut(s)	440, 477, 647
Tru9I	TTAA	3 cut(s)	440, 477, 647
TseFI	GTSAC	2 cut(s)	41, 463
TseI	GCWGC	2 cut(s)	624, 629
Tsp45I	GTSAC	2 cut(s)	41, 463
TspDTI	ATGAA	6 cut(s)	8, 84, 93, 141, 182, 234
TspGWI	ACGGA	2 cut(s)	286, 563
XapI	RAATTY	3 cut(s)	230, 470, 649
XceI	RCATGY	2 cut(s)	59, 691
XcmI	CCANNNNNNNNNTGG	1 cut(s)	17
XmnI	GAANNNNTTC	1 cut(s)	345
XspI	CTAG	1 cut(s)	434
Zsp2I	ATGCAT	1 cut(s)	57

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.