Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr4

Orthogroup ID

OG0009654

Physical Location & Seq

Genomic Coordinates Reverse (-)

3299088 .. 3300688

Gene Structure 1601 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom04g03690.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 723 bp

ATGCATGCTGAAACCTATGAACATAATGAAGGGATAGAAGATGTGCTTCCTGAGAATTTGGACTTGTGTGTAGATGAAAAAGAGGAGACAGAAGAACAATCGGCTGATCTACCTATGAACGTAGAAGCTTTAGAACCGTATATAGGCATGGAGTTCAACTCAAGAGATGAAGCTAGAGAATTTTATGTTGCATATGGCAGACGCTCCGGTTTCACCGTACGGATACACCACAATCGTCGTTCACGAGTAAATAATCAGATTATTGGTCAAGATTTTGTTTGCTCAAAAGAAGGCTTTCGAGCAAAAAAGTATGTGCACAGAAAAGACAGAGTTCTTCCTCCACCCCCAGTAACCCGTGAGGGCTGTCAAGCTATGATAAGGCTAGCTCAAAGAGATGGACCAAAGTGGGTAGTCACAAAATTTGTTAAAGAGCATAATCACAAGCTAATGAGTCCCAGCAAGGTTCCATGGCGGGGATCAGGAAAGCACTTAGCAAGTGAGGATGAGAAGGATAAAAGAATCCGAGAGCTGTCCCTTGAGCTGTACAACGAGAGGCAAAAATGTAAGCGACGTTGTGCTGCATATGAAGAACAGCTAAATATAATCTTGAAAGATTTGGAAAAACACACAGAGCACATGTCAAAAAAAGTTTCGGATACAGTTCAGAGCATAAAAGAAATTGAGGAGGAACAATCAGAGGACTCGGATAGCGGATGGAGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FAR1

Protein Analysis

241

Amino Acids

28.1

Weight (kDa)

5.98

Isoelectric Point (pI)

68.47

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009654)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g17603 FvH4_2g17603 FvH4_2g17603
malus_domestica	MD04G1041900.v1.1
prunus_persica	Prupe.1G195700_v2.0.a1 Prupe.1G195700_v2.0.a1 Prupe.8G188600_v2.0.a1
pyrus_communis	pycom04g03690 pycom13g28370 pycom275g00050
rosa_chinensis	RchiOBHm_Chr6g0282581
rosa_laevigata	RLG00000012884
rosa_multiflora	Rmu_co8454661.1_g000001 Rmu_sc0000283.1_g000004 Rmu_sc0005697.1_g000005
rosa_roxburghii	Rroxscaffold_7G00186250
rosa_rugosa	Rorug06G0147800
rosa_samantha	Rh6AG261000 Rh6BG264100 Rh6CG263300 Rh6DG255200
rosa_wichuraiana	Rw6G022570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	472, 711
AclWI	GGATC	1 cut(s)	484
AcsI	RAATTY	3 cut(s)	55, 179, 419
AfaI	GTAC	2 cut(s)	219, 545
AfiI	CCNNNNNNNGG	2 cut(s)	143, 473
AflIII	ACRYGT	1 cut(s)	636
AgsI	TTSAA	2 cut(s)	157, 610
AluBI	AGCT	8 cut(s)	128, 173, 371, 386, 445, 529, 541, 595
AluI	AGCT	8 cut(s)	128, 173, 371, 386, 445, 529, 541, 595
Alw21I	GWGCWC	2 cut(s)	318, 636
Alw26I	GTCTC	1 cut(s)	80
Alw44I	GTGCAC	1 cut(s)	314
AlwI	GGATC	1 cut(s)	484
ApaLI	GTGCAC	1 cut(s)	314
ApeKI	GCWGC	1 cut(s)	578
ApoI	RAATTY	3 cut(s)	55, 179, 419
Asp700I	GAANNNNTTC	1 cut(s)	294
AspS9I	GGNCC	1 cut(s)	398
AsuHPI	GGTGA	1 cut(s)	205
AsuNHI	GCTAGC	1 cut(s)	382
AvaII	GGWCC	1 cut(s)	398
BaeGI	GKGCMC	1 cut(s)	318
BauI	CACGAG	1 cut(s)	243
Bbv12I	GWGCWC	2 cut(s)	318, 636
BbvI	GCAGC	1 cut(s)	565
BccI	CCATC	2 cut(s)	389, 708
BciVI	GTATCC	2 cut(s)	216, 649
BcoDI	GTCTC	1 cut(s)	80
BfaI	CTAG	2 cut(s)	174, 383
BfuI	GTATCC	2 cut(s)	216, 649
BisI	GCNGC	1 cut(s)	579
BlsI	GCNGC	1 cut(s)	580
Bme18I	GGWCC	1 cut(s)	398
BmgT120I	GGNCC	1 cut(s)	398
BmiI	GGNNCC	1 cut(s)	465
BmrI	ACTGGG	1 cut(s)	341
BmtI	GCTAGC	1 cut(s)	386
BmuI	ACTGGG	1 cut(s)	341
BplI	GAGNNNNNCTC	2 cut(s)	143, 175
BpuEI	CTTGAG	2 cut(s)	145, 557
BsaJI	CCNNGG	1 cut(s)	467
BsaWI	WCCGGW	1 cut(s)	206
Bsc4I	CCNNNNNNNGG	2 cut(s)	143, 473
Bse1I	ACTGG	1 cut(s)	347
BseDI	CCNNGG	1 cut(s)	467
BseGI	GGATG	2 cut(s)	508, 719
BseLI	CCNNNNNNNGG	2 cut(s)	143, 473
BseMII	CTCAG	1 cut(s)	42
BseNI	ACTGG	1 cut(s)	347
BseRI	GAGGAG	2 cut(s)	98, 698
BseSI	GKGCMC	1 cut(s)	318
BseXI	GCAGC	1 cut(s)	565
BseYI	CCCAGC	1 cut(s)	455
BsiHKAI	GWGCWC	2 cut(s)	318, 636
BsiSI	CCGG	1 cut(s)	207
BsiWI	CGTACG	1 cut(s)	217
BslFI	GGGAC	2 cut(s)	438, 517
BslI	CCNNNNNNNGG	2 cut(s)	143, 473
BsmAI	GTCTC	1 cut(s)	80
BsmFI	GGGAC	2 cut(s)	438, 517
Bsp1286I	GDGCHC	2 cut(s)	318, 636
Bsp1407I	TGTACA	1 cut(s)	543
Bsp143I	GATC	2 cut(s)	106, 476
Bsp19I	CCATGG	1 cut(s)	467
BspACI	CCGC	2 cut(s)	472, 711
BspCNI	CTCAG	1 cut(s)	43
BspLI	GGNNCC	1 cut(s)	465
BspOI	GCTAGC	1 cut(s)	386
BspPI	GGATC	1 cut(s)	484
BsrGI	TGTACA	1 cut(s)	543
BsrI	ACTGG	1 cut(s)	347
BssECI	CCNNGG	1 cut(s)	467
BssMI	GATC	2 cut(s)	106, 476
BssSI	CACGAG	1 cut(s)	243
BssT1I	CCWWGG	1 cut(s)	467
Bst2BI	CACGAG	1 cut(s)	243
Bst4CI	ACNGT	3 cut(s)	138, 217, 661
BstAUI	TGTACA	1 cut(s)	543
BstC8I	GCNNGC	2 cut(s)	6, 384
BstDEI	CTNAG	2 cut(s)	51, 490
BstDSI	CCRYGG	1 cut(s)	467
BstF5I	GGATG	2 cut(s)	508, 719
BstKTI	GATC	2 cut(s)	109, 479
BstMAI	GTCTC	1 cut(s)	80
BstMBI	GATC	2 cut(s)	106, 476
BstNSI	RCATGY	2 cut(s)	8, 640
BstSLI	GKGCMC	1 cut(s)	318
BstV1I	GCAGC	1 cut(s)	565
BsuI	GTATCC	2 cut(s)	216, 649
BtgI	CCRYGG	1 cut(s)	467
BtsCI	GGATG	2 cut(s)	508, 719
Cac8I	GCNNGC	2 cut(s)	6, 384
Cfr13I	GGNCC	1 cut(s)	398
CseI	GACGC	1 cut(s)	210
Csp6I	GTAC	2 cut(s)	218, 544
CviAII	CATG	4 cut(s)	5, 148, 468, 637
CviQI	GTAC	2 cut(s)	218, 544
DdeI	CTNAG	2 cut(s)	51, 490
DpnI	GATC	2 cut(s)	108, 478
DpnII	GATC	2 cut(s)	106, 476
Eco130I	CCWWGG	1 cut(s)	467
Eco47I	GGWCC	1 cut(s)	398
EcoT14I	CCWWGG	1 cut(s)	467
EcoT22I	ATGCAT	1 cut(s)	6
ErhI	CCWWGG	1 cut(s)	467
FaeI	CATG	4 cut(s)	8, 151, 471, 640
FalI	AAGNNNNNCTT	2 cut(s)	30, 62
FaqI	GGGAC	2 cut(s)	438, 517
FatI	CATG	4 cut(s)	4, 147, 467, 636
FauI	CCCGC	1 cut(s)	465
FauNDI	CATATG	2 cut(s)	193, 583
Fnu4HI	GCNGC	1 cut(s)	579
FokI	GGATG	1 cut(s)	515
Fsp4HI	GCNGC	1 cut(s)	579
FspBI	CTAG	2 cut(s)	174, 383
GluI	GCNGC	1 cut(s)	579
GsaI	CCCAGC	1 cut(s)	459
HapII	CCGG	1 cut(s)	207
HgaI	GACGC	1 cut(s)	210
Hin1II	CATG	4 cut(s)	8, 151, 471, 640
HindIII	AAGCTT	1 cut(s)	126
HinfI	GANTC	3 cut(s)	451, 519, 701
HpaII	CCGG	1 cut(s)	207
HphI	GGTGA	1 cut(s)	205
Hpy166II	GTNNAC	2 cut(s)	242, 316
Hpy188I	TCNGA	6 cut(s)	258, 524, 655, 666, 697, 706
Hpy188III	TCNNGA	6 cut(s)	50, 162, 243, 269, 480, 607
Hpy8I	GTNNAC	2 cut(s)	242, 316
Hpy99I	CGWCG	2 cut(s)	240, 573
HpyAV	CCTTC	3 cut(s)	23, 284, 502
HpyCH4III	ACNGT	3 cut(s)	138, 217, 661
HpyCH4IV	ACGT	2 cut(s)	120, 571
HpyCH4V	TGCA	4 cut(s)	4, 191, 316, 581
HpyF3I	CTNAG	2 cut(s)	51, 490
HpySE526I	ACGT	2 cut(s)	120, 571
Hsp92II	CATG	4 cut(s)	8, 151, 471, 640
Kzo9I	GATC	2 cut(s)	106, 476
LmnI	GCTCC	1 cut(s)	209
LpnPI	CCDG	5 cut(s)	63, 220, 360, 465, 469
Lsp1109I	GCAGC	1 cut(s)	565
MaeI	CTAG	2 cut(s)	174, 383
MaeII	ACGT	2 cut(s)	120, 571
MaeIII	GTNAC	2 cut(s)	349, 412
MalI	GATC	2 cut(s)	108, 478
MboI	GATC	2 cut(s)	106, 476
MboII	GAAGA	4 cut(s)	50, 104, 326, 599
MhlI	GDGCHC	2 cut(s)	318, 636
MluCI	AATT	4 cut(s)	55, 179, 419, 678
MlyI	GAGTC	2 cut(s)	460, 695
MnlI	CCTC	8 cut(s)	76, 348, 352, 493, 546, 676, 679, 691
Mph1103I	ATGCAT	1 cut(s)	6
MroXI	GAANNNNTTC	1 cut(s)	294
MseI	TTAA	2 cut(s)	426, 721
MspI	CCGG	1 cut(s)	207
NcoI	CCATGG	1 cut(s)	467
NdeI	CATATG	2 cut(s)	193, 583
NdeII	GATC	2 cut(s)	106, 476
NheI	GCTAGC	1 cut(s)	382
NlaIII	CATG	4 cut(s)	8, 151, 471, 640
NlaIV	GGNNCC	1 cut(s)	465
NmuCI	GTSAC	1 cut(s)	412
NsiI	ATGCAT	1 cut(s)	6
NspI	RCATGY	2 cut(s)	8, 640
PaeI	GCATGC	1 cut(s)	8
PciI	ACATGT	1 cut(s)	636
PcsI	WCGNNNNNNNCGW	1 cut(s)	241
PdmI	GAANNNNTTC	1 cut(s)	294
PfeI	GAWTC	1 cut(s)	519
Pfl23II	CGTACG	1 cut(s)	217
PkrI	GCNGC	1 cut(s)	580
PleI	GAGTC	2 cut(s)	459, 695
PpsI	GAGTC	2 cut(s)	459, 695
PscI	ACATGT	1 cut(s)	636
PspFI	CCCAGC	1 cut(s)	455
PspLI	CGTACG	1 cut(s)	217
PspN4I	GGNNCC	1 cut(s)	465
PspPI	GGNCC	1 cut(s)	398
RsaI	GTAC	2 cut(s)	219, 545
RsaNI	GTAC	2 cut(s)	218, 544
SaqAI	TTAA	2 cut(s)	426, 721
SatI	GCNGC	1 cut(s)	579
Sau3AI	GATC	2 cut(s)	106, 476
Sau96I	GGNCC	1 cut(s)	398
SchI	GAGTC	2 cut(s)	460, 695
SduI	GDGCHC	2 cut(s)	318, 636
SinI	GGWCC	1 cut(s)	398
SmlI	CTYRAG	2 cut(s)	160, 536
SmoI	CTYRAG	2 cut(s)	160, 536
SphI	GCATGC	1 cut(s)	8
Sse9I	AATT	4 cut(s)	55, 179, 419, 678
SsiI	CCGC	2 cut(s)	472, 711
SspMI	CTAG	2 cut(s)	174, 383
StyI	CCWWGG	1 cut(s)	467
TaaI	ACNGT	3 cut(s)	138, 217, 661
TaiI	ACGT	2 cut(s)	123, 574
TaqI	TCGA	1 cut(s)	298
TasI	AATT	4 cut(s)	55, 179, 419, 678
TatI	WGTACW	1 cut(s)	543
TfiI	GAWTC	1 cut(s)	519
Tru1I	TTAA	2 cut(s)	426, 721
Tru9I	TTAA	2 cut(s)	426, 721
TseFI	GTSAC	1 cut(s)	412
TseI	GCWGC	1 cut(s)	578
Tsp45I	GTSAC	1 cut(s)	412
TspDTI	ATGAA	6 cut(s)	33, 42, 90, 131, 183, 600
TspGWI	ACGGA	1 cut(s)	235
VneI	GTGCAC	1 cut(s)	314
VpaK11BI	GGWCC	1 cut(s)	398
XapI	RAATTY	3 cut(s)	55, 179, 419
XceI	RCATGY	2 cut(s)	8, 640
XmnI	GAANNNNTTC	1 cut(s)	294
XspI	CTAG	2 cut(s)	174, 383
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.