Rh6BG264100

FAR1 DNA-binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0009654
Physical Location & Seq
Forward (+)
47911714 .. 47915604
3891 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG264100.1

Sequence Viewer

Length: 540 bp
ATGGAAAGCGAGAGTAACAACAACAACAACAACAACCCATTTGATTCAGATGAGAGCCAAAGTTGTGAGCTTCCAAATGACGTTGATTTGTGCTCAGGTGAAGTAGATAAGATTATAGAACTGTCTAATGGACGCTCACATTTGATGGGTAATCCCATTGAGCCTTACATAGGAATGGAGTTCAAGTCTAGAGACACTGCTCGAGAGTTTTACATTGCTTATGGCAGGCACACTGGGTTTACAGTTAGGATTCATCACAACCGTCGTTCGAGGATGAATAACATGGTGATTGGCCAGGATTTCGTTTGCTCGAAAGAGGGTTTTCGTGACAAGAAGTATGTGTACAGGGACAATAGAGTTCTTCCTCCACCGCCTGTGACAAGAGAAGGTTGTGCTGCAATGCTGAGGGTGGCTTTAAGAGATGGGGAAAAGTGGGTTGTTACCAAGTTTGTGAAGGAGCACAATCACACATTGATGTCTCCGAGTAAAGTTCCGTGGCGAGGATCTGGGAAAACCTTGATCAATGAGGTGTGTGTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAR1

Protein Analysis

179

Amino Acids

20.51

Weight (kDa)

7.68

Isoelectric Point (pI)

46.82

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FAR1 PF03101 69 - 159 1.3e-25 FAR1 DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 371
AclWI GGATC 1 cut(s) 511
AcoI YGGCCR 1 cut(s) 292
AfaI GTAC 1 cut(s) 344
AfiI CCNNNNNNNGG 2 cut(s) 170, 500
AgsI TTSAA 1 cut(s) 184
AjnI CCWGG 1 cut(s) 294
AluBI AGCT 1 cut(s) 70
AluI AGCT 1 cut(s) 70
Alw21I GWGCWC 2 cut(s) 95, 462
Alw26I GTCTC 2 cut(s) 186, 483
AlwI GGATC 1 cut(s) 511
Ama87I CYCGRG 1 cut(s) 201
AoxI GGCC 1 cut(s) 292
ApeKI GCWGC 1 cut(s) 395
AsuHPI GGTGA 2 cut(s) 110, 298
AvaI CYCGRG 1 cut(s) 201
BalI TGGCCA 1 cut(s) 294
BarI GAAGNNNNNNTAC 2 cut(s) 326, 358
Bbv12I GWGCWC 2 cut(s) 95, 462
BbvCI CCTCAGC 1 cut(s) 404
BbvI GCAGC 1 cut(s) 382
BccI CCATC 2 cut(s) 139, 416
BciT130I CCWGG 1 cut(s) 296
BclI TGATCA 1 cut(s) 519
BcoDI GTCTC 2 cut(s) 186, 483
BfaI CTAG 1 cut(s) 189
BisI GCNGC 1 cut(s) 396
BlsI GCNGC 1 cut(s) 397
Bme1390I CCNGG 1 cut(s) 296
BmeT110I CYCGRG 1 cut(s) 201
BmrFI CCNGG 1 cut(s) 296
BmrI ACTGGG 1 cut(s) 243
BmuI ACTGGG 1 cut(s) 243
Bpu10I CCTNAGC 2 cut(s) 94, 404
BsaJI CCNNGG 1 cut(s) 494
BsaXI ACNNNNNCTCC 2 cut(s) 170, 200
Bsc4I CCNNNNNNNGG 2 cut(s) 170, 500
Bse1I ACTGG 1 cut(s) 238
Bse3DI GCAATG 2 cut(s) 213, 405
BseBI CCWGG 1 cut(s) 296
BseDI CCNNGG 1 cut(s) 494
BseGI GGATG 1 cut(s) 279
BseLI CCNNNNNNNGG 2 cut(s) 170, 500
BseMI GCAATG 2 cut(s) 213, 405
BseMII CTCAG 2 cut(s) 108, 395
BseNI ACTGG 1 cut(s) 238
BseXI GCAGC 1 cut(s) 382
BshFI GGCC 1 cut(s) 294
BsiHKAI GWGCWC 2 cut(s) 95, 462
BsiHKCI CYCGRG 1 cut(s) 201
BslFI GGGAC 1 cut(s) 362
BslI CCNNNNNNNGG 2 cut(s) 170, 500
BsmAI GTCTC 2 cut(s) 186, 483
BsmFI GGGAC 1 cut(s) 362
BsnI GGCC 1 cut(s) 294
BsoBI CYCGRG 1 cut(s) 201
Bsp1286I GDGCHC 2 cut(s) 95, 462
Bsp1407I TGTACA 1 cut(s) 342
Bsp143I GATC 2 cut(s) 503, 519
BspACI CCGC 1 cut(s) 371
BspANI GGCC 1 cut(s) 294
BspCNI CTCAG 2 cut(s) 107, 396
BspPI GGATC 1 cut(s) 511
BsrDI GCAATG 2 cut(s) 213, 405
BsrGI TGTACA 1 cut(s) 342
BsrI ACTGG 1 cut(s) 238
BssECI CCNNGG 1 cut(s) 494
BssMI GATC 2 cut(s) 503, 519
Bst2UI CCWGG 1 cut(s) 296
Bst4CI ACNGT 3 cut(s) 123, 244, 263
BstAUI TGTACA 1 cut(s) 342
BstC8I GCNNGC 1 cut(s) 227
BstDEI CTNAG 2 cut(s) 94, 404
BstDSI CCRYGG 1 cut(s) 494
BstENI CCTNNNNNAGG 1 cut(s) 168
BstF5I GGATG 1 cut(s) 279
BstKTI GATC 2 cut(s) 506, 522
BstMAI GTCTC 2 cut(s) 186, 483
BstMBI GATC 2 cut(s) 503, 519
BstNI CCWGG 1 cut(s) 296
BstSCI CCNGG 1 cut(s) 294
BstV1I GCAGC 1 cut(s) 382
BstX2I RGATCY 1 cut(s) 503
BstYI RGATCY 1 cut(s) 503
BsuRI GGCC 1 cut(s) 294
BtgI CCRYGG 1 cut(s) 494
BtsCI GGATG 1 cut(s) 279
BtsI GCAGTG 1 cut(s) 195
BtsIMutI CAGTG 2 cut(s) 195, 231
Cac8I GCNNGC 1 cut(s) 227
CseI GACGC 1 cut(s) 141
Csp6I GTAC 1 cut(s) 343
CviAII CATG 1 cut(s) 283
CviJI RGCY 5 cut(s) 57, 70, 163, 294, 413
CviKI_1 RGCY 5 cut(s) 57, 70, 163, 294, 413
CviQI GTAC 1 cut(s) 343
DdeI CTNAG 2 cut(s) 94, 404
DpnI GATC 2 cut(s) 505, 521
DpnII GATC 2 cut(s) 503, 519
EaeI YGGCCR 1 cut(s) 292
Eco88I CYCGRG 1 cut(s) 201
EcoNI CCTNNNNNAGG 1 cut(s) 168
EcoRII CCWGG 1 cut(s) 294
FaeI CATG 1 cut(s) 286
FaiI YATR 5 cut(s) 116, 170, 222, 284, 339
FaqI GGGAC 1 cut(s) 362
FatI CATG 1 cut(s) 282
FbaI TGATCA 1 cut(s) 519
Fnu4HI GCNGC 1 cut(s) 396
FokI GGATG 1 cut(s) 286
Fsp4HI GCNGC 1 cut(s) 396
FspBI CTAG 1 cut(s) 189
GluI GCNGC 1 cut(s) 396
HaeIII GGCC 1 cut(s) 294
HgaI GACGC 1 cut(s) 141
Hin1II CATG 1 cut(s) 286
HinfI GANTC 2 cut(s) 44, 250
HphI GGTGA 2 cut(s) 110, 298
Hpy166II GTNNAC 2 cut(s) 240, 343
Hpy188I TCNGA 2 cut(s) 49, 483
Hpy188III TCNNGA 3 cut(s) 189, 203, 326
Hpy8I GTNNAC 2 cut(s) 240, 343
Hpy99I CGWCG 1 cut(s) 267
HpyAV CCTTC 2 cut(s) 380, 448
HpyCH4III ACNGT 3 cut(s) 123, 244, 263
HpyCH4IV ACGT 1 cut(s) 81
HpyCH4V TGCA 1 cut(s) 398
HpyF3I CTNAG 2 cut(s) 94, 404
HpySE526I ACGT 1 cut(s) 81
Hsp92II CATG 1 cut(s) 286
Ksp22I TGATCA 1 cut(s) 519
Kzo9I GATC 2 cut(s) 503, 519
LmnI GCTCC 1 cut(s) 457
LpnPI CCDG 8 cut(s) 81, 211, 219, 281, 308, 331, 387, 492
Lsp1109I GCAGC 1 cut(s) 382
MaeI CTAG 1 cut(s) 189
MaeII ACGT 1 cut(s) 81
MaeIII GTNAC 4 cut(s) 14, 326, 376, 439
MalI GATC 2 cut(s) 505, 521
MboI GATC 2 cut(s) 503, 519
MboII GAAGA 1 cut(s) 353
MflI RGATCY 1 cut(s) 503
MhlI GDGCHC 2 cut(s) 95, 462
MlsI TGGCCA 1 cut(s) 294
MluNI TGGCCA 1 cut(s) 294
MnlI CCTC 6 cut(s) 264, 310, 375, 399, 494, 520
Mox20I TGGCCA 1 cut(s) 294
MscI TGGCCA 1 cut(s) 294
MseI TTAA 1 cut(s) 416
MslI CAYNNNNRTG 2 cut(s) 173, 473
Msp20I TGGCCA 1 cut(s) 294
MspR9I CCNGG 1 cut(s) 296
MvaI CCWGG 1 cut(s) 296
NdeII GATC 2 cut(s) 503, 519
NlaIII CATG 1 cut(s) 286
NmuCI GTSAC 2 cut(s) 326, 376
PaeR7I CTCGAG 1 cut(s) 201
PfeI GAWTC 2 cut(s) 44, 250
PkrI GCNGC 1 cut(s) 397
Psp6I CCWGG 1 cut(s) 294
PspGI CCWGG 1 cut(s) 294
PsuI RGATCY 1 cut(s) 503
RsaI GTAC 1 cut(s) 344
RsaNI GTAC 1 cut(s) 343
RseI CAYNNNNRTG 2 cut(s) 173, 473
SaqAI TTAA 1 cut(s) 416
SatI GCNGC 1 cut(s) 396
Sau3AI GATC 2 cut(s) 503, 519
ScrFI CCNGG 1 cut(s) 296
SduI GDGCHC 2 cut(s) 95, 462
SetI ASST 6 cut(s) 72, 84, 100, 391, 518, 531
Sfr274I CTCGAG 1 cut(s) 201
SlaI CTCGAG 1 cut(s) 201
SmiMI CAYNNNNRTG 2 cut(s) 173, 473
SmlI CTYRAG 1 cut(s) 201
SmoI CTYRAG 1 cut(s) 201
SsiI CCGC 1 cut(s) 371
SspMI CTAG 1 cut(s) 189
StyD4I CCNGG 1 cut(s) 294
TaaI ACNGT 3 cut(s) 123, 244, 263
TaiI ACGT 1 cut(s) 84
TaqI TCGA 3 cut(s) 202, 269, 311
TatI WGTACW 1 cut(s) 342
TfiI GAWTC 2 cut(s) 44, 250
Tru1I TTAA 1 cut(s) 416
Tru9I TTAA 1 cut(s) 416
TscAI CASTG 2 cut(s) 202, 238
TseFI GTSAC 2 cut(s) 326, 376
TseI GCWGC 1 cut(s) 395
Tsp45I GTSAC 2 cut(s) 326, 376
TspDTI ATGAA 2 cut(s) 242, 290
TspGWI ACGGA 1 cut(s) 483
TspRI CASTG 2 cut(s) 202, 238
XagI CCTNNNNNAGG 1 cut(s) 168
XbaI TCTAGA 1 cut(s) 188
XhoI CTCGAG 1 cut(s) 201
XspI CTAG 1 cut(s) 189
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.