Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8454661.1

Orthogroup ID

OG0009654

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 1586

Gene Structure 1586 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8454661.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 786 bp

agttgtgatggatgtagagcttgtgtgaatttggttctagaagtaataatggaaagcgagagtaacaacaacaacaacaacaacccatttgattcagatgagagccaaagttgtgagcttccaaatgacattgatttgtgctcaggtgaagtagataagattatagaactgtctaatggacgctcacatttgatgggtaatcccattgagccttacataggaatggagttcaagtctagagacactgctcgagagttttacattgcttatggcaggcacactgggtttacagttaggattcatcacaaccgtcgttcgaggatgaataacatggtgattggccaggatttcgtttgctcgaaagagggttttcgtgacaagaagtatgtgtacagggacaatagagttcttcctccaccgcctgtgacaagagaaggttgtgctgcaatgctgagggtggctttaagagatggggaaaagtgggttgttaccaagtttgtgaaggagcacaatcacacattgatgtctccgagtaaagttccgtggcgaggatctgggaaaaccttgatcaatgaggatgagaaggatcggaaaattagggagctgaccattgaactgagcaatgagagacagcgatgtaaacgtaagtgtgcagcatatcaagatcaattgaataggcttttgaaagatgtccaagaccacagtgatcacttgtcagaaagagttcaagacatagtgaagaacataagagaactagagagcgagcaatctgaggactcagattaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FAR1

Protein Analysis

261

Amino Acids

30.17

Weight (kDa)

6.11

Isoelectric Point (pI)

53.28

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009654)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g17603 FvH4_2g17603 FvH4_2g17603
malus_domestica	MD04G1041900.v1.1
prunus_persica	Prupe.1G195700_v2.0.a1 Prupe.1G195700_v2.0.a1 Prupe.8G188600_v2.0.a1
pyrus_communis	pycom04g03690 pycom13g28370 pycom275g00050
rosa_chinensis	RchiOBHm_Chr6g0282581
rosa_laevigata	RLG00000012884
rosa_multiflora	Rmu_co8454661.1_g000001 Rmu_sc0000283.1_g000004 Rmu_sc0005697.1_g000005
rosa_roxburghii	Rroxscaffold_7G00186250
rosa_rugosa	Rorug06G0147800
rosa_samantha	Rh6AG261000 Rh6BG264100 Rh6CG263300 Rh6DG255200
rosa_wichuraiana	Rw6G022570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	419
AclWI	GGATC	2 cut(s)	559, 594
AcoI	YGGCCR	1 cut(s)	340
AcsI	RAATTY	1 cut(s)	28
AfaI	GTAC	1 cut(s)	392
AfiI	CCNNNNNNNGG	2 cut(s)	218, 548
AgsI	TTSAA	5 cut(s)	232, 614, 673, 685, 728
AjnI	CCWGG	1 cut(s)	342
AluBI	AGCT	3 cut(s)	20, 118, 604
AluI	AGCT	3 cut(s)	20, 118, 604
Alw21I	GWGCWC	2 cut(s)	143, 510
Alw26I	GTCTC	3 cut(s)	234, 531, 622
AlwI	GGATC	2 cut(s)	559, 594
Ama87I	CYCGRG	1 cut(s)	249
AoxI	GGCC	1 cut(s)	340
ApeKI	GCWGC	2 cut(s)	443, 653
ApoI	RAATTY	1 cut(s)	28
Asp700I	GAANNNNTTC	1 cut(s)	723
AsuHPI	GGTGA	2 cut(s)	158, 346
AvaI	CYCGRG	1 cut(s)	249
BalI	TGGCCA	1 cut(s)	342
BarI	GAAGNNNNNNTAC	2 cut(s)	374, 406
Bbv12I	GWGCWC	2 cut(s)	143, 510
BbvCI	CCTCAGC	1 cut(s)	452
BbvI	GCAGC	2 cut(s)	430, 665
BccI	CCATC	3 cut(s)	2, 187, 464
BciT130I	CCWGG	1 cut(s)	344
BclI	TGATCA	2 cut(s)	567, 706
BcoDI	GTCTC	3 cut(s)	234, 531, 622
BfaI	CTAG	3 cut(s)	38, 237, 755
BisI	GCNGC	2 cut(s)	444, 654
BlsI	GCNGC	2 cut(s)	445, 655
Bme1390I	CCNGG	1 cut(s)	344
BmeT110I	CYCGRG	1 cut(s)	249
BmrFI	CCNGG	1 cut(s)	344
BmrI	ACTGGG	1 cut(s)	291
BmuI	ACTGGG	1 cut(s)	291
Bpu10I	CCTNAGC	2 cut(s)	142, 452
BsaJI	CCNNGG	1 cut(s)	542
BsaXI	ACNNNNNCTCC	2 cut(s)	218, 248
Bsc4I	CCNNNNNNNGG	2 cut(s)	218, 548
Bse1I	ACTGG	1 cut(s)	286
Bse3DI	GCAATG	3 cut(s)	261, 453, 628
BseBI	CCWGG	1 cut(s)	344
BseDI	CCNNGG	1 cut(s)	542
BseGI	GGATG	3 cut(s)	17, 327, 583
BseLI	CCNNNNNNNGG	2 cut(s)	218, 548
BseMI	GCAATG	3 cut(s)	261, 453, 628
BseMII	CTCAG	4 cut(s)	156, 443, 608, 762
BseNI	ACTGG	1 cut(s)	286
BseXI	GCAGC	2 cut(s)	430, 665
BsgI	GTGCAG	1 cut(s)	672
BshFI	GGCC	1 cut(s)	342
BsiHKAI	GWGCWC	2 cut(s)	143, 510
BsiHKCI	CYCGRG	1 cut(s)	249
BslFI	GGGAC	1 cut(s)	410
BslI	CCNNNNNNNGG	2 cut(s)	218, 548
BsmAI	GTCTC	3 cut(s)	234, 531, 622
BsmFI	GGGAC	1 cut(s)	410
BsnI	GGCC	1 cut(s)	342
BsoBI	CYCGRG	1 cut(s)	249
Bsp1286I	GDGCHC	2 cut(s)	143, 510
Bsp1407I	TGTACA	1 cut(s)	390
Bsp143I	GATC	5 cut(s)	551, 567, 586, 664, 706
BspACI	CCGC	1 cut(s)	419
BspANI	GGCC	1 cut(s)	342
BspCNI	CTCAG	4 cut(s)	155, 444, 609, 763
BspPI	GGATC	2 cut(s)	559, 594
BsrDI	GCAATG	3 cut(s)	261, 453, 628
BsrGI	TGTACA	1 cut(s)	390
BsrI	ACTGG	1 cut(s)	286
BssECI	CCNNGG	1 cut(s)	542
BssMI	GATC	5 cut(s)	551, 567, 586, 664, 706
Bst2UI	CCWGG	1 cut(s)	344
Bst4CI	ACNGT	4 cut(s)	171, 292, 311, 704
BstAUI	TGTACA	1 cut(s)	390
BstC8I	GCNNGC	2 cut(s)	275, 764
BstDEI	CTNAG	5 cut(s)	142, 452, 617, 771, 778
BstDSI	CCRYGG	1 cut(s)	542
BstENI	CCTNNNNNAGG	1 cut(s)	216
BstF5I	GGATG	3 cut(s)	17, 327, 583
BstKTI	GATC	5 cut(s)	554, 570, 589, 667, 709
BstMAI	GTCTC	3 cut(s)	234, 531, 622
BstMBI	GATC	5 cut(s)	551, 567, 586, 664, 706
BstNI	CCWGG	1 cut(s)	344
BstSCI	CCNGG	1 cut(s)	342
BstV1I	GCAGC	2 cut(s)	430, 665
BstX2I	RGATCY	1 cut(s)	551
BstYI	RGATCY	1 cut(s)	551
BsuRI	GGCC	1 cut(s)	342
BtgI	CCRYGG	1 cut(s)	542
BtgZI	GCGATG	1 cut(s)	649
BtsCI	GGATG	3 cut(s)	17, 327, 583
BtsI	GCAGTG	1 cut(s)	243
BtsIMutI	CAGTG	3 cut(s)	243, 279, 709
Cac8I	GCNNGC	2 cut(s)	275, 764
CseI	GACGC	1 cut(s)	189
Csp6I	GTAC	1 cut(s)	391
CviAII	CATG	1 cut(s)	331
CviJI	RGCY	8 cut(s)	20, 105, 118, 211, 342, 461, 604, 679
CviKI_1	RGCY	8 cut(s)	20, 105, 118, 211, 342, 461, 604, 679
CviQI	GTAC	1 cut(s)	391
DdeI	CTNAG	5 cut(s)	142, 452, 617, 771, 778
DpnI	GATC	5 cut(s)	553, 569, 588, 666, 708
DpnII	GATC	5 cut(s)	551, 567, 586, 664, 706
EaeI	YGGCCR	1 cut(s)	340
Eco88I	CYCGRG	1 cut(s)	249
EcoNI	CCTNNNNNAGG	1 cut(s)	216
EcoRII	CCWGG	1 cut(s)	342
FaeI	CATG	1 cut(s)	334
FaiI	YATR	8 cut(s)	164, 218, 270, 332, 387, 658, 734, 746
FaqI	GGGAC	1 cut(s)	410
FatI	CATG	1 cut(s)	330
FbaI	TGATCA	2 cut(s)	567, 706
Fnu4HI	GCNGC	2 cut(s)	444, 654
FokI	GGATG	3 cut(s)	24, 334, 590
Fsp4HI	GCNGC	2 cut(s)	444, 654
FspBI	CTAG	3 cut(s)	38, 237, 755
GluI	GCNGC	2 cut(s)	444, 654
HaeIII	GGCC	1 cut(s)	342
HgaI	GACGC	1 cut(s)	189
Hin1II	CATG	1 cut(s)	334
HinfI	GANTC	3 cut(s)	92, 298, 776
HphI	GGTGA	2 cut(s)	158, 346
Hpy166II	GTNNAC	3 cut(s)	288, 391, 641
Hpy188I	TCNGA	6 cut(s)	97, 531, 591, 718, 772, 781
Hpy188III	TCNNGA	6 cut(s)	38, 237, 251, 374, 662, 728
Hpy8I	GTNNAC	3 cut(s)	288, 391, 641
Hpy99I	CGWCG	1 cut(s)	315
HpyAV	CCTTC	3 cut(s)	428, 496, 577
HpyCH4III	ACNGT	4 cut(s)	171, 292, 311, 704
HpyCH4IV	ACGT	1 cut(s)	643
HpyCH4V	TGCA	2 cut(s)	446, 653
HpyF3I	CTNAG	5 cut(s)	142, 452, 617, 771, 778
HpySE526I	ACGT	1 cut(s)	643
Hsp92II	CATG	1 cut(s)	334
Ksp22I	TGATCA	2 cut(s)	567, 706
Kzo9I	GATC	5 cut(s)	551, 567, 586, 664, 706
LmnI	GCTCC	2 cut(s)	505, 601
LpnPI	CCDG	8 cut(s)	129, 259, 267, 329, 356, 379, 435, 540
Lsp1109I	GCAGC	2 cut(s)	430, 665
MaeI	CTAG	3 cut(s)	38, 237, 755
MaeII	ACGT	1 cut(s)	643
MaeIII	GTNAC	4 cut(s)	62, 374, 424, 487
MalI	GATC	5 cut(s)	553, 569, 588, 666, 708
MboI	GATC	5 cut(s)	551, 567, 586, 664, 706
MboII	GAAGA	2 cut(s)	401, 751
MfeI	CAATTG	1 cut(s)	668
MflI	RGATCY	1 cut(s)	551
MhlI	GDGCHC	2 cut(s)	143, 510
MlsI	TGGCCA	1 cut(s)	342
MluCI	AATT	3 cut(s)	28, 594, 668
MluNI	TGGCCA	1 cut(s)	342
MlyI	GAGTC	1 cut(s)	770
MnlI	CCTC	7 cut(s)	312, 358, 423, 447, 542, 568, 766
Mox20I	TGGCCA	1 cut(s)	342
MroXI	GAANNNNTTC	1 cut(s)	723
MscI	TGGCCA	1 cut(s)	342
MseI	TTAA	2 cut(s)	464, 784
MslI	CAYNNNNRTG	2 cut(s)	221, 521
Msp20I	TGGCCA	1 cut(s)	342
MspR9I	CCNGG	1 cut(s)	344
MunI	CAATTG	1 cut(s)	668
MvaI	CCWGG	1 cut(s)	344
NdeII	GATC	5 cut(s)	551, 567, 586, 664, 706
NlaIII	CATG	1 cut(s)	334
NmuCI	GTSAC	2 cut(s)	374, 424
PaeR7I	CTCGAG	1 cut(s)	249
PdmI	GAANNNNTTC	1 cut(s)	723
PfeI	GAWTC	2 cut(s)	92, 298
PkrI	GCNGC	2 cut(s)	445, 655
PleI	GAGTC	1 cut(s)	770
PpsI	GAGTC	1 cut(s)	770
Psp6I	CCWGG	1 cut(s)	342
PspGI	CCWGG	1 cut(s)	342
PsuI	RGATCY	1 cut(s)	551
RsaI	GTAC	1 cut(s)	392
RsaNI	GTAC	1 cut(s)	391
RseI	CAYNNNNRTG	2 cut(s)	221, 521
SaqAI	TTAA	2 cut(s)	464, 784
SatI	GCNGC	2 cut(s)	444, 654
Sau3AI	GATC	5 cut(s)	551, 567, 586, 664, 706
SchI	GAGTC	1 cut(s)	770
ScrFI	CCNGG	1 cut(s)	344
SduI	GDGCHC	2 cut(s)	143, 510
SetI	ASST	7 cut(s)	22, 120, 148, 439, 566, 606, 646
Sfr274I	CTCGAG	1 cut(s)	249
SlaI	CTCGAG	1 cut(s)	249
SmiMI	CAYNNNNRTG	2 cut(s)	221, 521
SmlI	CTYRAG	1 cut(s)	249
SmoI	CTYRAG	1 cut(s)	249
Sse9I	AATT	3 cut(s)	28, 594, 668
SsiI	CCGC	1 cut(s)	419
SspMI	CTAG	3 cut(s)	38, 237, 755
StyD4I	CCNGG	1 cut(s)	342
TaaI	ACNGT	4 cut(s)	171, 292, 311, 704
TaiI	ACGT	1 cut(s)	646
TaqI	TCGA	3 cut(s)	250, 317, 359
TasI	AATT	3 cut(s)	28, 594, 668
TatI	WGTACW	1 cut(s)	390
TfiI	GAWTC	2 cut(s)	92, 298
Tru1I	TTAA	2 cut(s)	464, 784
Tru9I	TTAA	2 cut(s)	464, 784
TscAI	CASTG	3 cut(s)	250, 286, 709
TseFI	GTSAC	2 cut(s)	374, 424
TseI	GCWGC	2 cut(s)	443, 653
Tsp45I	GTSAC	2 cut(s)	374, 424
TspDTI	ATGAA	2 cut(s)	290, 338
TspGWI	ACGGA	1 cut(s)	531
TspRI	CASTG	3 cut(s)	250, 286, 709
XagI	CCTNNNNNAGG	1 cut(s)	216
XapI	RAATTY	1 cut(s)	28
XbaI	TCTAGA	2 cut(s)	37, 236
XhoI	CTCGAG	1 cut(s)	249
XmnI	GAANNNNTTC	1 cut(s)	723
XspI	CTAG	3 cut(s)	38, 237, 755

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.